Wall clock time and date at job start Tue Mar 31 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47836 * 111.00391 * 2 1 4 4 C 1.54905 * 104.80025 * 213.63693 * 3 2 1 5 5 C 1.55141 * 101.65148 * 37.07000 * 4 3 2 6 6 H 1.09003 * 110.70093 * 82.72827 * 5 4 3 7 7 C 1.50696 * 110.70677 * 205.96144 * 5 4 3 8 8 O 1.21283 * 119.99686 * 355.05796 * 7 5 4 9 9 N 1.34773 * 120.00005 * 175.05503 * 7 5 4 10 10 C 1.46661 * 125.33471 * 180.02562 * 9 7 5 11 11 C 1.53667 * 107.97002 * 180.70900 * 10 9 7 12 12 H 1.09006 * 112.77977 * 140.60568 * 11 10 9 13 13 C 1.53979 * 109.29979 * 266.92501 * 11 10 9 14 14 N 1.46757 * 106.67942 * 138.83377 * 13 11 10 15 15 C 1.36942 * 125.33390 * 161.58814 * 14 13 11 16 16 H 1.08006 * 119.99975 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00363 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46942 * 60.00104 * 19 17 15 21 21 H 1.48494 * 109.46921 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47016 * 299.99813 * 19 17 15 23 23 C 1.46653 * 109.33060 * 341.55701 * 14 13 11 24 24 C 1.53669 * 107.97245 * 0.70292 * 23 14 13 25 25 H 1.09004 * 112.77282 * 139.88526 * 24 23 14 26 26 C 1.46759 * 125.33548 * 359.69430 * 9 7 5 27 27 C 1.47448 * 110.99964 * 239.15902 * 2 1 3 28 28 H 1.09002 * 109.47401 * 180.83948 * 1 2 3 29 29 H 1.09001 * 109.46874 * 60.83961 * 1 2 3 30 30 H 1.09004 * 109.46970 * 300.84094 * 1 2 3 31 31 H 1.09002 * 110.37573 * 332.47383 * 3 2 1 32 32 H 1.09009 * 110.36990 * 94.80497 * 3 2 1 33 33 H 1.09000 * 110.99139 * 278.97739 * 4 3 2 34 34 H 1.09004 * 110.99283 * 155.16265 * 4 3 2 35 35 H 1.09003 * 109.76377 * 300.33358 * 10 9 7 36 36 H 1.08994 * 109.76938 * 61.07259 * 10 9 7 37 37 H 1.09005 * 110.01879 * 258.14287 * 13 11 10 38 38 H 1.08999 * 110.01484 * 19.48525 * 13 11 10 39 39 H 0.97000 * 120.00375 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.76813 * 120.33968 * 23 14 13 41 41 H 1.09001 * 109.76497 * 241.06072 * 23 14 13 42 42 H 1.09002 * 110.01775 * 280.85657 * 26 9 7 43 43 H 1.09004 * 110.01449 * 42.24750 * 26 9 7 44 44 H 1.09001 * 109.88743 * 242.66894 * 27 2 1 45 45 H 1.09005 * 109.88620 * 3.68826 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3801 0.0000 4 6 3.3048 1.3026 -0.8296 5 6 2.9159 0.2821 -1.9315 6 1 2.3744 0.7748 -2.7391 7 6 4.1383 -0.4231 -2.4600 8 8 5.2413 -0.0918 -2.0798 9 7 4.0058 -1.4219 -3.3552 10 6 5.1109 -2.1854 -3.9439 11 6 4.5123 -3.2086 -4.9217 12 1 5.1042 -3.3205 -5.8302 13 6 4.2880 -4.5433 -4.1875 14 7 2.9917 -5.0608 -4.6409 15 6 2.5720 -6.3590 -4.5230 16 1 3.2159 -7.0952 -4.0648 17 6 1.3191 -6.7287 -4.9923 18 7 0.5342 -5.8315 -5.5502 19 14 0.7469 -8.4998 -4.8321 20 1 0.7204 -8.8835 -3.3977 21 1 -0.6165 -8.6332 -5.4050 22 1 1.6819 -9.3903 -5.5656 23 6 2.2158 -3.9697 -5.2394 24 6 3.0690 -2.6930 -5.1796 25 1 2.9878 -2.0886 -6.0831 26 6 2.7326 -1.9205 -3.8883 27 6 1.9974 -0.7057 -1.1819 28 1 -0.3634 -1.0275 0.0151 29 1 -0.3633 0.5007 -0.8974 30 1 -0.3633 0.5269 0.8824 31 1 1.2890 2.0592 -0.4722 32 1 2.2148 1.7037 1.0183 33 1 4.1303 0.9281 -0.2243 34 1 3.5496 2.2719 -1.2639 35 1 5.7802 -1.5119 -4.4791 36 1 5.6604 -2.7039 -3.1583 37 1 5.0805 -5.2471 -4.4423 38 1 4.2683 -4.3779 -3.1103 39 1 -0.3412 -6.0900 -5.8785 40 1 1.9826 -4.2091 -6.2768 41 1 1.2927 -3.8230 -4.6785 42 1 2.2598 -2.5848 -3.1650 43 1 2.0708 -1.0849 -4.1164 44 1 2.5696 -1.5785 -0.8675 45 1 1.1753 -1.0145 -1.8276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049212254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:13 Heat of formation + Delta-G solvation = -16.161649 kcal Electronic energy + Delta-G solvation = -24807.863958 eV Core-core repulsion = 21438.988449 eV Total energy + Delta-G solvation = -3368.875510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80267 -40.26846 -38.90174 -36.64282 -34.17317 -33.22415 -31.64210 -31.59926 -29.97429 -27.42701 -27.06939 -26.69468 -24.78870 -22.67552 -22.09942 -21.83300 -20.81993 -20.22227 -18.90621 -18.30883 -17.19538 -17.16414 -16.80586 -16.50638 -15.87187 -15.62371 -15.38657 -15.04248 -14.73912 -14.47332 -14.38747 -14.22798 -13.66058 -13.48606 -13.41449 -13.37239 -13.14990 -12.90806 -12.70376 -12.62248 -12.57894 -12.26108 -12.19046 -12.03198 -11.88195 -11.83481 -11.72154 -11.55739 -11.45478 -10.91372 -10.66900 -9.70089 -9.35135 -8.87264 -7.84568 -5.19191 1.47833 1.49665 1.49886 1.55979 1.93753 2.50545 2.96834 3.26116 3.33616 3.41523 3.48977 3.61042 3.80424 3.88679 3.91656 4.10887 4.21596 4.27298 4.28792 4.31903 4.44029 4.46461 4.52797 4.58767 4.64822 4.71758 4.81679 4.83704 4.88996 4.96014 4.97040 5.00729 5.04592 5.13748 5.16937 5.24503 5.34206 5.48505 5.64531 5.79595 5.88796 6.06428 6.22621 6.45123 7.04424 7.13777 7.80348 8.41753 9.25100 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.004452 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.675392 B = 6288.434259 C = 7362.643368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.552 5.552 3 C 0.045 3.955 4 C -0.105 4.105 5 C -0.122 4.122 6 H 0.125 0.875 7 C 0.536 3.464 8 O -0.578 6.578 9 N -0.609 5.609 10 C 0.122 3.878 11 C -0.095 4.095 12 H 0.118 0.882 13 C 0.140 3.860 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.077 0.923 17 C -0.057 4.057 18 N -0.946 5.946 19 Si 0.973 3.027 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.198 3.802 24 C -0.110 4.110 25 H 0.117 0.883 26 C 0.120 3.880 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.010 0.990 39 H 0.248 0.752 40 H 0.015 0.985 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 15.670 5.249 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.277 5.277 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.144 4.144 6 H 0.143 0.857 7 C 0.326 3.674 8 O -0.458 6.458 9 N -0.341 5.341 10 C -0.001 4.001 11 C -0.115 4.115 12 H 0.136 0.864 13 C 0.014 3.986 14 N -0.349 5.349 15 C -0.376 4.376 16 H 0.095 0.905 17 C -0.250 4.250 18 N -0.595 5.595 19 Si 0.802 3.198 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.073 3.927 24 C -0.130 4.130 25 H 0.135 0.865 26 C -0.003 4.003 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.092 15.511 5.923 16.735 hybrid contribution -0.733 -1.136 -0.718 1.531 sum 1.359 14.375 5.205 15.349 Atomic orbital electron populations 1.22603 0.86154 1.02421 1.01769 1.63538 1.09434 1.15526 1.39189 1.23145 0.94990 0.88788 1.01269 1.22581 0.97912 0.98655 0.95178 1.22565 0.94077 0.97571 1.00217 0.85700 1.20440 0.90939 0.78705 0.77313 1.90658 1.29007 1.66366 1.59812 1.48384 1.08934 1.34098 1.42691 1.21697 0.89412 0.93173 0.95792 1.22804 0.96413 0.93552 0.98689 0.86434 1.21448 0.87920 0.93840 0.95351 1.44505 1.14609 1.05749 1.70050 1.19358 0.99501 0.85423 1.33287 0.90505 1.25523 0.96996 1.01614 1.00890 1.70128 1.10016 1.33420 1.45914 0.85234 0.76964 0.79926 0.77685 1.20695 1.21802 1.20452 1.20706 0.91796 0.84140 0.96055 1.23109 0.95021 0.96903 0.97982 0.86516 1.22151 0.85467 0.98141 0.94495 1.22688 0.97399 0.96139 0.90720 0.91871 0.94277 0.89871 0.91353 0.89063 0.91639 0.88660 0.90164 0.92201 0.94373 0.97212 0.94249 0.96642 0.96267 0.92783 0.88613 0.92864 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.12 127.69 1.16 1.49 16 2 N -0.55 -12.14 5.44 -911.69 -4.96 -17.10 16 3 C 0.05 0.78 6.73 86.77 0.58 1.37 16 4 C -0.10 -2.15 6.13 31.98 0.20 -1.96 16 5 C -0.12 -2.76 2.64 -10.36 -0.03 -2.79 16 6 H 0.13 2.24 7.99 -2.39 -0.02 2.22 16 7 C 0.54 15.85 7.07 87.66 0.62 16.47 16 8 O -0.58 -20.74 16.07 -3.04 -0.05 -20.79 16 9 N -0.61 -17.74 3.31 -817.14 -2.71 -20.44 16 10 C 0.12 3.53 6.19 86.57 0.54 4.06 16 11 C -0.10 -2.96 4.10 -9.41 -0.04 -2.99 16 12 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 13 C 0.14 5.57 6.42 86.66 0.56 6.13 16 14 N -0.62 -30.82 3.38 -697.74 -2.36 -33.17 16 15 C -0.25 -13.58 10.25 84.03 0.86 -12.72 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.06 -3.14 5.48 84.86 0.47 -2.67 16 18 N -0.95 -54.46 10.25 21.65 0.22 -54.24 16 19 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C 0.20 8.99 4.72 86.58 0.41 9.40 16 24 C -0.11 -3.56 4.12 -9.34 -0.04 -3.60 16 25 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16 26 C 0.12 3.47 4.67 86.73 0.41 3.88 16 27 C 0.06 1.43 5.20 86.64 0.45 1.88 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 0.94 7.78 -2.39 -0.02 0.92 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.06 1.67 7.49 -2.39 -0.02 1.65 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 1.84 7.62 -2.39 -0.02 1.83 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.01 0.42 7.56 -2.39 -0.02 0.40 16 39 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.02 0.79 7.36 -2.39 -0.02 0.78 16 41 H 0.02 0.97 6.93 -2.39 -0.02 0.96 16 42 H 0.05 1.85 7.12 -2.39 -0.02 1.84 16 43 H 0.10 2.21 7.69 -2.38 -0.02 2.20 16 44 H 0.05 1.59 7.81 -2.39 -0.02 1.58 16 45 H 0.07 1.65 7.10 -2.38 -0.02 1.63 16 Total: -1.00 -67.43 344.03 -0.73 -68.16 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.96 Total: 12.79 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 6.14 Total: 17.95 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -9.81 Total: -124.96 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -67.43 -0.73 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049212254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.995 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds