Wall clock time and date at job start Tue Mar 31 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47887 * 111.01481 * 2 1 4 4 C 1.54908 * 104.77420 * 146.33028 * 3 2 1 5 5 C 1.55138 * 101.68619 * 322.97931 * 4 3 2 6 6 H 1.09004 * 110.70438 * 277.08217 * 5 4 3 7 7 C 1.50696 * 110.70648 * 154.02039 * 5 4 3 8 8 O 1.21284 * 120.00149 * 359.97438 * 7 5 4 9 9 N 1.34784 * 120.00170 * 179.97438 * 7 5 4 10 10 C 1.47351 * 125.52753 * 359.69023 * 9 7 5 11 11 C 1.55164 * 104.77586 * 156.46868 * 10 9 7 12 12 C 1.54796 * 101.39820 * 37.54073 * 11 10 9 13 13 H 1.08997 * 113.15489 * 85.43809 * 12 11 10 14 14 C 1.53268 * 109.74662 * 212.11676 * 12 11 10 15 15 N 1.46581 * 108.15837 * 95.76181 * 14 12 11 16 16 C 1.36943 * 125.30308 * 177.88854 * 15 14 12 17 17 H 1.07995 * 119.99957 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99838 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47000 * 60.00445 * 20 18 16 22 22 H 1.48503 * 109.47379 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47193 * 300.00373 * 20 18 16 24 24 C 1.47544 * 109.62686 * 358.29269 * 15 14 12 25 25 C 1.47212 * 125.52876 * 180.02562 * 9 7 5 26 26 H 1.08996 * 112.29154 * 56.22413 * 25 9 7 27 27 C 1.47444 * 110.99660 * 120.87688 * 2 1 3 28 28 H 1.08991 * 109.47068 * 299.12577 * 1 2 3 29 29 H 1.09002 * 109.46591 * 59.12472 * 1 2 3 30 30 H 1.08997 * 109.47034 * 179.12322 * 1 2 3 31 31 H 1.08993 * 110.35657 * 27.51601 * 3 2 1 32 32 H 1.09005 * 110.40536 * 265.16436 * 3 2 1 33 33 H 1.09002 * 110.99023 * 204.86730 * 4 3 2 34 34 H 1.08995 * 110.99233 * 81.08878 * 4 3 2 35 35 H 1.08999 * 110.35649 * 275.42159 * 10 9 7 36 36 H 1.09006 * 110.35388 * 37.71174 * 10 9 7 37 37 H 1.09003 * 111.21743 * 279.44969 * 11 10 9 38 38 H 1.08997 * 110.94613 * 155.51235 * 11 10 9 39 39 H 1.09002 * 109.73398 * 215.45279 * 14 12 11 40 40 H 1.09000 * 109.73398 * 336.07186 * 14 12 11 41 41 H 0.96997 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.81883 * 258.08399 * 24 15 14 43 43 H 1.09003 * 110.47496 * 136.49661 * 24 15 14 44 44 H 1.08998 * 109.89066 * 117.34098 * 27 2 1 45 45 H 1.09001 * 109.89084 * 356.14657 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9994 1.3805 0.0000 4 6 3.3048 1.3022 0.8304 5 6 2.9159 0.2810 1.9316 6 1 2.3770 0.7736 2.7411 7 6 4.1383 -0.4245 2.4598 8 8 5.2337 -0.1555 2.0140 9 7 4.0143 -1.3545 3.4274 10 6 2.7493 -1.7701 4.0586 11 6 3.0289 -3.1956 4.6040 12 6 4.4908 -3.0548 5.0929 13 1 4.5679 -2.6593 6.1057 14 6 5.2238 -4.3903 4.9252 15 7 5.9492 -4.3566 3.6518 16 6 6.7546 -5.3553 3.1731 17 1 6.8942 -6.2587 3.7481 18 6 7.3905 -5.2069 1.9483 19 7 7.2199 -4.1061 1.2472 20 14 8.4897 -6.5689 1.2955 21 1 7.6953 -7.8138 1.1387 22 1 9.0466 -6.1675 -0.0213 23 1 9.6015 -6.8082 2.2504 24 6 5.6876 -3.0765 2.9663 25 6 5.1215 -2.1147 4.0302 26 1 5.8878 -1.4646 4.4522 27 6 1.9974 -0.7064 1.1814 28 1 -0.3633 0.5002 0.8976 29 1 -0.3632 0.5274 -0.8821 30 1 -0.3633 -1.0275 -0.0157 31 1 1.2894 2.0594 0.4721 32 1 2.2161 1.7044 -1.0180 33 1 3.5495 2.2713 1.2654 34 1 4.1306 0.9283 0.2254 35 1 2.4918 -1.0934 4.8733 36 1 1.9482 -1.7977 3.3199 37 1 2.9509 -3.9426 3.8140 38 1 2.3610 -3.4340 5.4317 39 1 5.9273 -4.5297 5.7460 40 1 4.5025 -5.2075 4.9164 41 1 7.6647 -4.0023 0.3915 42 1 4.9553 -3.2252 2.1728 43 1 6.6104 -2.6702 2.5522 44 1 2.5697 -1.5790 0.8666 45 1 1.1755 -1.0130 1.8285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076569236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:54 Heat of formation + Delta-G solvation = -11.860756 kcal Electronic energy + Delta-G solvation = -25122.165024 eV Core-core repulsion = 21753.476015 eV Total energy + Delta-G solvation = -3368.689009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73207 -40.13462 -38.69622 -36.63298 -34.17652 -33.13401 -32.21401 -30.83517 -29.76443 -28.34928 -26.76855 -26.39270 -24.36282 -22.77594 -22.31240 -21.90274 -20.83612 -19.95238 -18.93381 -18.41387 -17.16899 -17.03237 -16.86641 -16.28872 -15.83005 -15.57124 -15.10429 -15.00090 -14.90519 -14.47354 -14.31576 -14.09261 -13.76969 -13.50494 -13.43764 -13.21029 -13.02219 -12.92546 -12.75333 -12.56377 -12.53808 -12.26696 -12.19788 -12.15707 -11.87557 -11.83676 -11.70353 -11.48284 -11.41517 -10.80761 -10.74251 -9.60695 -9.29691 -8.93055 -7.80569 -5.25726 1.41042 1.45997 1.52817 1.62420 1.98785 2.47345 2.98889 3.29639 3.32944 3.45027 3.61418 3.62874 3.78697 3.89457 4.01746 4.13942 4.25314 4.28441 4.32607 4.38231 4.44505 4.49490 4.54357 4.56852 4.64163 4.73753 4.82827 4.84692 4.93302 4.95441 5.00276 5.07479 5.11269 5.17751 5.19275 5.27656 5.45499 5.48792 5.58660 5.79975 5.91418 6.12512 6.21499 6.62872 7.04497 7.22427 7.76304 8.37640 9.21955 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.004853 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.238043 B = 5768.001355 C = 6519.856790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.560 5.560 3 C 0.050 3.950 4 C -0.114 4.114 5 C -0.114 4.114 6 H 0.137 0.863 7 C 0.523 3.477 8 O -0.586 6.586 9 N -0.609 5.609 10 C 0.096 3.904 11 C -0.114 4.114 12 C -0.092 4.092 13 H 0.130 0.870 14 C 0.137 3.863 15 N -0.627 5.627 16 C -0.244 4.244 17 H 0.089 0.911 18 C -0.072 4.072 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.272 1.272 22 H -0.299 1.299 23 H -0.272 1.272 24 C 0.190 3.810 25 C 0.116 3.884 26 H 0.066 0.934 27 C 0.063 3.937 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.242 0.758 42 H -0.021 1.021 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.952 10.423 6.943 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.285 5.285 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.136 4.136 6 H 0.155 0.845 7 C 0.312 3.688 8 O -0.466 6.466 9 N -0.342 5.342 10 C -0.025 4.025 11 C -0.152 4.152 12 C -0.111 4.111 13 H 0.148 0.852 14 C 0.012 3.988 15 N -0.354 5.354 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.264 4.264 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.198 1.198 22 H -0.226 1.226 23 H -0.198 1.198 24 C 0.064 3.936 25 C 0.011 3.989 26 H 0.084 0.916 27 C -0.065 4.065 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.051 0.949 42 H -0.003 1.003 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.140 10.306 6.032 21.718 hybrid contribution 1.198 -0.502 -0.333 1.341 sum -16.942 9.804 5.699 20.387 Atomic orbital electron populations 1.22614 0.85455 1.02736 1.01949 1.63471 1.09997 1.15366 1.39660 1.23086 0.94638 0.89088 1.00833 1.22609 0.98075 0.98792 0.95754 1.22549 0.93607 0.97327 1.00107 0.84541 1.20820 0.91057 0.78947 0.77962 1.90720 1.30625 1.66070 1.59163 1.48658 1.09592 1.38419 1.37489 1.22801 0.85150 0.96143 0.98424 1.22840 0.94847 0.95788 1.01681 1.22911 0.95916 0.93396 0.98850 0.85183 1.21265 0.93930 0.96079 0.87509 1.44725 1.54351 1.16321 1.19996 1.19482 1.19817 0.96395 1.01633 0.89333 1.25795 1.02637 1.00150 0.97855 1.70282 1.47873 1.27739 1.14151 0.85097 0.78721 0.78273 0.76927 1.19780 1.22552 1.19784 1.21265 0.96806 0.84539 0.90971 1.22642 0.89748 0.92125 0.94432 0.91574 1.22674 0.97391 0.95720 0.90725 0.93492 0.90358 0.91235 0.90430 0.89808 0.88755 0.93198 0.87518 0.89143 0.93049 0.85476 0.95240 0.94507 0.94863 1.00350 0.94795 0.94181 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.16 1.47 16 2 N -0.56 -12.86 5.44 -911.57 -4.96 -17.82 16 3 C 0.05 1.00 6.73 86.77 0.58 1.59 16 4 C -0.11 -2.94 6.17 31.98 0.20 -2.74 16 5 C -0.11 -2.90 2.71 -10.36 -0.03 -2.93 16 6 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 7 C 0.52 19.50 6.86 87.65 0.60 20.10 16 8 O -0.59 -28.92 15.79 -3.04 -0.05 -28.97 16 9 N -0.61 -20.72 2.85 -783.25 -2.23 -22.95 16 10 C 0.10 2.06 6.62 86.96 0.58 2.63 16 11 C -0.11 -2.70 6.26 31.95 0.20 -2.50 16 12 C -0.09 -2.81 3.91 -9.31 -0.04 -2.84 16 13 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 14 C 0.14 5.47 6.66 86.45 0.58 6.05 16 15 N -0.63 -33.97 3.40 -696.30 -2.37 -36.34 16 16 C -0.24 -14.39 10.25 84.03 0.86 -13.53 16 17 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 18 C -0.07 -4.38 5.48 84.86 0.47 -3.91 16 19 N -0.95 -63.16 10.16 21.65 0.22 -62.94 16 20 Si 0.98 48.48 29.55 68.60 2.03 50.51 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 C 0.19 10.50 4.79 86.58 0.42 10.91 16 25 C 0.12 4.72 3.85 46.04 0.18 4.89 16 26 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 27 C 0.06 1.56 5.34 86.65 0.46 2.02 16 28 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.08 7.78 -2.39 -0.02 1.06 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.73 7.40 -2.39 -0.02 1.71 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.64 5.35 -2.38 -0.01 1.63 16 37 H 0.05 1.57 7.88 -2.39 -0.02 1.55 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.40 7.74 -2.39 -0.02 1.38 16 41 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 42 H -0.02 -1.34 7.94 -2.39 -0.02 -1.35 16 43 H 0.03 2.26 6.29 -2.39 -0.02 2.24 16 44 H 0.04 1.36 7.81 -2.39 -0.02 1.34 16 45 H 0.09 1.66 6.23 -2.39 -0.01 1.64 16 Total: -1.00 -85.57 343.36 -0.19 -85.75 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.96 Total: 11.53 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.22 Total: 21.22 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -9.34 Total: -140.05 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -85.57 -0.19 -85.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076569236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.892 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds