Wall clock time and date at job start Tue Mar 31 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48498 * 109.46957 * 239.99922 * 3 2 1 5 5 H 1.48500 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46974 * 120.00040 * 3 2 1 7 7 C 1.38807 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99737 * 194.45170 * 7 2 1 9 9 N 1.36938 * 120.00377 * 14.45521 * 7 2 1 10 10 C 1.46542 * 119.73775 * 205.16519 * 9 7 2 11 11 C 1.53143 * 108.25061 * 236.39943 * 10 9 7 12 12 C 1.53065 * 109.21230 * 301.59109 * 11 10 9 13 13 H 1.08999 * 113.84415 * 274.47720 * 12 11 10 14 14 C 1.54084 * 111.39287 * 142.39902 * 12 11 10 15 15 N 1.47287 * 87.60531 * 273.97120 * 14 12 11 16 16 C 1.34781 * 136.54036 * 151.36496 * 15 14 12 17 17 O 1.21623 * 119.99511 * 179.97438 * 16 15 14 18 18 C 1.47169 * 120.00240 * 0.02562 * 16 15 14 19 19 C 1.38246 * 128.47483 * 179.70160 * 18 16 15 20 20 N 1.31240 * 111.88704 * 179.80965 * 19 18 16 21 21 N 1.27337 * 120.03826 * 0.53258 * 20 19 18 22 22 S 1.56639 * 109.74114 * 359.69307 * 21 20 19 23 23 C 1.46465 * 86.91452 * 331.62249 * 15 14 12 24 24 H 1.09004 * 111.43739 * 276.12821 * 23 15 14 25 25 C 1.45699 * 119.73739 * 25.14394 * 9 7 2 26 26 H 0.97007 * 120.00018 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.70345 * 116.71154 * 10 9 7 28 28 H 1.08998 * 109.74187 * 356.10766 * 10 9 7 29 29 H 1.08998 * 109.51583 * 181.67053 * 11 10 9 30 30 H 1.09004 * 109.56069 * 61.53380 * 11 10 9 31 31 H 1.09001 * 113.52980 * 159.28961 * 14 12 11 32 32 H 1.08997 * 113.59446 * 28.66049 * 14 12 11 33 33 H 1.07996 * 124.05895 * 359.97438 * 19 18 16 34 34 H 1.09008 * 108.78708 * 260.92156 * 25 9 7 35 35 H 1.08996 * 108.78980 * 19.24563 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0646 -1.2171 0.2329 9 7 1.3580 -2.3692 -0.2971 10 6 1.8765 -3.6414 0.2129 11 6 2.1181 -4.5729 -0.9784 12 6 0.8049 -4.7670 -1.7405 13 1 0.1757 -5.5612 -1.3390 14 6 1.0418 -4.8287 -3.2618 15 7 0.9665 -3.3578 -3.2708 16 6 1.4786 -2.3565 -4.0138 17 8 1.2086 -1.2013 -3.7459 18 6 2.3633 -2.6612 -5.1497 19 6 2.9750 -1.7817 -6.0235 20 7 3.7016 -2.4080 -6.9192 21 7 3.7660 -3.6797 -6.9117 22 16 2.8991 -4.2465 -5.7366 23 6 0.0892 -3.4744 -2.1039 24 1 -0.9438 -3.6589 -2.3990 25 6 0.1539 -2.3360 -1.1168 26 1 -0.4850 0.8401 -0.0004 27 1 1.1487 -4.0903 0.8888 28 1 2.8138 -3.4712 0.7425 29 1 2.4767 -5.5376 -0.6194 30 1 2.8621 -4.1317 -1.6416 31 1 0.2311 -5.3093 -3.8093 32 1 2.0234 -5.2158 -3.5351 33 1 2.8698 -0.7081 -5.9734 34 1 -0.7171 -2.3856 -0.4633 35 1 0.1280 -1.3941 -1.6645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084211808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:27 Heat of formation + Delta-G solvation = 117.711864 kcal Electronic energy + Delta-G solvation = -22136.755381 eV Core-core repulsion = 18879.345833 eV Total energy + Delta-G solvation = -3257.409548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88219 -40.60258 -37.78717 -35.32459 -32.33479 -32.03543 -30.26543 -29.45530 -27.38452 -26.85158 -23.95062 -23.64978 -22.12124 -21.22722 -20.02466 -19.26774 -17.87653 -17.23600 -16.30071 -16.09090 -15.69258 -15.58844 -14.77011 -14.27573 -13.89317 -13.61708 -13.57076 -13.39367 -12.85272 -12.72539 -12.51747 -12.12473 -11.93402 -11.58547 -11.19093 -10.76995 -10.67301 -10.57736 -10.28043 -10.26113 -10.10222 -9.99172 -9.86040 -9.82692 -9.79294 -9.22894 -8.37034 -8.36061 -6.65201 -5.70128 -3.12121 -0.25716 0.79359 1.45477 1.99298 2.90675 3.30115 3.45587 3.51466 3.54649 3.98380 4.45903 4.48391 4.58592 4.72889 5.04132 5.27626 5.35335 5.37964 5.53354 5.55841 5.59999 5.76933 5.89582 6.03349 6.18635 6.29258 6.40061 6.49194 6.71373 6.91940 7.39505 7.58520 7.69214 7.88260 8.00621 8.37992 8.52741 9.30974 9.94805 10.41807 11.38211 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.006596 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.141573 B = 4244.179614 C = 5293.616484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.108 4.108 13 H 0.099 0.901 14 C 0.084 3.916 15 N -0.627 5.627 16 C 0.621 3.379 17 O -0.488 6.488 18 C -0.254 4.254 19 C 0.061 3.939 20 N -0.250 5.250 21 N -0.273 5.273 22 S 0.405 5.595 23 C 0.125 3.875 24 H 0.078 0.922 25 C 0.163 3.837 26 H 0.253 0.747 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.216 0.784 34 H 0.034 0.966 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -13.193 -8.360 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.186 4.186 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.021 3.979 11 C -0.158 4.158 12 C -0.127 4.127 13 H 0.117 0.883 14 C -0.040 4.040 15 N -0.363 5.363 16 C 0.406 3.594 17 O -0.362 6.362 18 C -0.396 4.396 19 C -0.105 4.105 20 N -0.115 5.115 21 N -0.254 5.254 22 S 0.540 5.460 23 C 0.022 3.978 24 H 0.096 0.904 25 C 0.037 3.963 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.052 0.948 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.950 -13.665 -9.344 16.669 hybrid contribution -0.057 2.152 0.327 2.178 sum 1.892 -11.513 -9.018 14.746 Atomic orbital electron populations 1.69986 1.05207 1.25500 1.54180 1.24914 0.95265 0.98140 1.00318 0.86388 0.78970 0.83615 0.77872 1.20990 1.21630 1.21156 1.19047 0.91690 0.84579 1.43131 0.92009 1.43466 1.29664 1.01651 1.55981 1.20726 0.97554 0.87177 0.92423 1.21881 0.94702 0.99624 0.99547 1.22690 0.99082 0.97736 0.93208 0.88330 1.23580 1.01541 0.81030 0.97846 1.49302 1.49546 1.05842 1.31616 1.15763 0.79804 0.84370 0.79497 1.90952 1.59091 1.18424 1.67718 1.28285 1.08769 0.97388 1.05136 1.24473 0.92921 1.03522 0.89553 1.70704 1.18384 0.99644 1.22810 1.78784 1.20582 1.07156 1.18843 1.82553 1.31695 1.13566 1.18225 1.22604 0.92697 0.97148 0.85370 0.90384 1.20222 0.89141 0.96177 0.90732 0.93675 0.96094 0.92504 0.92364 0.92242 0.89498 0.90933 0.76798 0.94775 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 10.94 55.49 0.61 -26.07 16 2 C 0.01 0.35 4.94 -17.43 -0.09 0.27 16 3 Si 0.90 22.88 29.58 -169.99 -5.03 17.85 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -7.07 9.53 -15.06 -0.14 -7.22 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.59 -14.25 3.03 -175.06 -0.53 -14.78 16 10 C 0.15 2.87 6.46 -3.95 -0.03 2.85 16 11 C -0.12 -1.79 5.69 -26.62 -0.15 -1.94 16 12 C -0.11 -1.44 4.57 -90.45 -0.41 -1.86 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.08 0.97 6.86 -11.54 -0.08 0.89 16 15 N -0.63 -10.35 3.34 -189.43 -0.63 -10.99 16 16 C 0.62 11.57 7.99 -12.63 -0.10 11.47 16 17 O -0.49 -11.45 16.22 5.26 0.09 -11.36 16 18 C -0.25 -3.84 6.79 -35.95 -0.24 -4.09 16 19 C 0.06 0.89 11.55 -17.80 -0.21 0.68 16 20 N -0.25 -3.73 11.54 30.36 0.35 -3.38 16 21 N -0.27 -3.82 12.51 60.35 0.75 -3.07 16 22 S 0.41 4.72 21.03 -107.50 -2.26 2.46 16 23 C 0.13 2.16 3.98 -77.97 -0.31 1.85 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 C 0.16 3.82 4.59 -5.57 -0.03 3.80 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16 33 H 0.22 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.03 0.86 8.00 -51.92 -0.42 0.45 16 35 H 0.11 2.91 4.95 -51.93 -0.26 2.65 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -33.40 302.37 -7.78 -41.18 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.90 Total: -3.11 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.79 Total: 6.70 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.55 Total: -58.28 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.85 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -2.26 Total: 2.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.40 -7.78 -41.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084211808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.895 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds