Wall clock time and date at job start Tue Mar 31 2020 03:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48498 * 109.46957 * 239.99922 * 3 2 1 5 5 H 1.48500 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46974 * 120.00040 * 3 2 1 7 7 C 1.38807 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99737 * 194.45170 * 7 2 1 9 9 N 1.36938 * 120.00377 * 14.45521 * 7 2 1 10 10 C 1.46542 * 119.73775 * 205.16519 * 9 7 2 11 11 C 1.53143 * 108.25061 * 236.39943 * 10 9 7 12 12 C 1.53065 * 109.21230 * 301.59109 * 11 10 9 13 13 H 1.08999 * 113.84415 * 274.47720 * 12 11 10 14 14 C 1.54084 * 111.39287 * 142.39902 * 12 11 10 15 15 N 1.47287 * 87.60531 * 273.97120 * 14 12 11 16 16 C 1.34781 * 136.54036 * 151.36496 * 15 14 12 17 17 O 1.21623 * 119.99511 * 179.97438 * 16 15 14 18 18 C 1.47169 * 120.00240 * 0.02562 * 16 15 14 19 19 C 1.38246 * 128.47483 * 179.70160 * 18 16 15 20 20 N 1.31240 * 111.88704 * 179.80965 * 19 18 16 21 21 N 1.27337 * 120.03826 * 0.53258 * 20 19 18 22 22 S 1.56639 * 109.74114 * 359.69307 * 21 20 19 23 23 C 1.46465 * 86.91452 * 331.62249 * 15 14 12 24 24 H 1.09004 * 111.43739 * 276.12821 * 23 15 14 25 25 C 1.45699 * 119.73739 * 25.14394 * 9 7 2 26 26 H 0.97007 * 120.00018 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.70345 * 116.71154 * 10 9 7 28 28 H 1.08998 * 109.74187 * 356.10766 * 10 9 7 29 29 H 1.08998 * 109.51583 * 181.67053 * 11 10 9 30 30 H 1.09004 * 109.56069 * 61.53380 * 11 10 9 31 31 H 1.09001 * 113.52980 * 159.28961 * 14 12 11 32 32 H 1.08997 * 113.59446 * 28.66049 * 14 12 11 33 33 H 1.07996 * 124.05895 * 359.97438 * 19 18 16 34 34 H 1.09008 * 108.78708 * 260.92156 * 25 9 7 35 35 H 1.08996 * 108.78980 * 19.24563 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0646 -1.2171 0.2329 9 7 1.3580 -2.3692 -0.2971 10 6 1.8765 -3.6414 0.2129 11 6 2.1181 -4.5729 -0.9784 12 6 0.8049 -4.7670 -1.7405 13 1 0.1757 -5.5612 -1.3390 14 6 1.0418 -4.8287 -3.2618 15 7 0.9665 -3.3578 -3.2708 16 6 1.4786 -2.3565 -4.0138 17 8 1.2086 -1.2013 -3.7459 18 6 2.3633 -2.6612 -5.1497 19 6 2.9750 -1.7817 -6.0235 20 7 3.7016 -2.4080 -6.9192 21 7 3.7660 -3.6797 -6.9117 22 16 2.8991 -4.2465 -5.7366 23 6 0.0892 -3.4744 -2.1039 24 1 -0.9438 -3.6589 -2.3990 25 6 0.1539 -2.3360 -1.1168 26 1 -0.4850 0.8401 -0.0004 27 1 1.1487 -4.0903 0.8888 28 1 2.8138 -3.4712 0.7425 29 1 2.4767 -5.5376 -0.6194 30 1 2.8621 -4.1317 -1.6416 31 1 0.2311 -5.3093 -3.8093 32 1 2.0234 -5.2158 -3.5351 33 1 2.8698 -0.7081 -5.9734 34 1 -0.7171 -2.3856 -0.4633 35 1 0.1280 -1.3941 -1.6645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084211808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:26 Heat of formation + Delta-G solvation = 93.103384 kcal Electronic energy + Delta-G solvation = -22137.822484 eV Core-core repulsion = 18879.345833 eV Total energy + Delta-G solvation = -3258.476651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09682 -41.76740 -39.22465 -37.07679 -34.02767 -33.26752 -31.95108 -30.86767 -28.86909 -28.12216 -25.69293 -24.99401 -23.39651 -22.68873 -21.31264 -20.36673 -19.47694 -18.58233 -17.77835 -17.44122 -17.20315 -16.82070 -16.24593 -15.82730 -15.58558 -15.10657 -15.00017 -14.65863 -14.41083 -14.13078 -13.81477 -13.56320 -13.16370 -13.12548 -12.77028 -12.65217 -12.36825 -12.23379 -11.99626 -11.76020 -11.51408 -11.37819 -11.20104 -11.17266 -10.89653 -10.79408 -10.43977 -9.65490 -8.64968 -7.83963 -5.26524 -1.36412 -0.26996 0.40895 0.85351 1.36928 1.43690 1.46846 1.67974 1.98221 2.49742 2.87852 3.29380 3.36017 3.41347 3.61446 3.75476 3.94977 4.16580 4.38584 4.47447 4.51592 4.57506 4.70065 4.71995 4.80812 4.93973 5.10531 5.13088 5.32966 5.42832 5.58682 5.71219 5.85309 6.41959 6.50504 6.74278 7.03197 7.21706 7.99205 8.36207 9.20124 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.006596 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.141573 B = 4244.179614 C = 5293.616484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.058 0.942 9 N -0.603 5.603 10 C 0.138 3.862 11 C -0.109 4.109 12 C -0.095 4.095 13 H 0.144 0.856 14 C 0.093 3.907 15 N -0.633 5.633 16 C 0.614 3.386 17 O -0.559 6.559 18 C -0.291 4.291 19 C 0.063 3.937 20 N -0.271 5.271 21 N -0.294 5.294 22 S 0.523 5.477 23 C 0.113 3.887 24 H 0.102 0.898 25 C 0.174 3.826 26 H 0.244 0.756 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.216 0.784 34 H 0.001 0.999 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -17.345 -9.270 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.780 3.220 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.387 4.387 8 H 0.076 0.924 9 N -0.326 5.326 10 C 0.013 3.987 11 C -0.148 4.148 12 C -0.114 4.114 13 H 0.161 0.839 14 C -0.028 4.028 15 N -0.367 5.367 16 C 0.401 3.599 17 O -0.437 6.437 18 C -0.432 4.432 19 C -0.104 4.104 20 N -0.134 5.134 21 N -0.276 5.276 22 S 0.658 5.342 23 C 0.009 3.991 24 H 0.120 0.880 25 C 0.048 3.952 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.019 0.981 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.737 -17.913 -10.253 20.820 hybrid contribution -0.276 3.276 0.671 3.356 sum 2.461 -14.636 -9.582 17.666 Atomic orbital electron populations 1.70146 1.06252 1.25180 1.56169 1.25543 0.95964 1.00769 1.01474 0.85588 0.77878 0.80701 0.77808 1.21920 1.21996 1.19555 1.19322 0.91714 0.86246 1.41378 0.92437 1.43711 1.29650 1.02450 1.56804 1.20974 0.97040 0.86005 0.94653 1.21778 0.95499 1.00241 0.97266 1.22743 0.97945 0.95965 0.94737 0.83853 1.23898 1.04532 0.77621 0.96769 1.49481 1.48548 1.08109 1.30596 1.16185 0.79759 0.83915 0.80003 1.90914 1.61692 1.21251 1.69889 1.27978 1.09745 1.00489 1.04957 1.24591 0.92483 1.03977 0.89347 1.70797 1.19279 0.99955 1.23393 1.78511 1.21540 1.07166 1.20339 1.81955 1.28084 1.09379 1.14820 1.22648 0.95039 0.96714 0.84714 0.88022 1.19848 0.87629 0.96843 0.90889 0.94647 0.95202 0.93312 0.87762 0.94081 0.84986 0.88727 0.76733 0.98138 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 10.94 21.65 0.24 -57.83 16 2 C -0.04 -2.51 4.94 84.86 0.42 -2.09 16 3 Si 0.95 49.06 29.58 68.60 2.03 51.09 16 4 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 5 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 6 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.26 -14.70 9.53 84.03 0.80 -13.90 16 8 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 9 N -0.60 -29.95 3.03 -707.78 -2.14 -32.09 16 10 C 0.14 5.19 6.46 86.42 0.56 5.74 16 11 C -0.11 -2.85 5.69 30.66 0.17 -2.68 16 12 C -0.10 -2.07 4.57 -10.69 -0.05 -2.12 16 13 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 14 C 0.09 1.62 6.86 81.10 0.56 2.17 16 15 N -0.63 -19.66 3.34 -871.47 -2.91 -22.57 16 16 C 0.61 23.01 7.99 86.59 0.69 23.70 16 17 O -0.56 -27.81 16.22 -4.10 -0.07 -27.88 16 18 C -0.29 -8.46 6.79 24.62 0.17 -8.29 16 19 C 0.06 1.83 11.55 84.78 0.98 2.81 16 20 N -0.27 -7.75 11.54 -57.87 -0.67 -8.42 16 21 N -0.29 -7.46 12.51 37.02 0.46 -7.00 16 22 S 0.52 10.15 21.03 -56.49 -1.19 8.96 16 23 C 0.11 3.70 3.98 38.51 0.15 3.85 16 24 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 25 C 0.17 8.42 4.59 85.82 0.39 8.82 16 26 H 0.24 15.03 8.31 -92.70 -0.77 14.26 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.86 7.87 -2.39 -0.02 1.84 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.24 7.68 -2.39 -0.02 1.22 16 31 H 0.13 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.26 6.50 -2.39 -0.02 1.25 16 33 H 0.22 5.91 8.06 -2.91 -0.02 5.89 16 34 H 0.00 0.04 8.00 -2.38 -0.02 0.02 16 35 H 0.05 3.20 4.95 -2.39 -0.01 3.18 16 Total: -1.00 -80.99 302.37 1.72 -79.27 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 1.12 Total: -1.54 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 4.85 Total: 18.02 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -5.02 Total: -127.91 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Atomic # 16 Polarization: 10.15 SS G_CDS: -1.19 Total: 8.96 kcal Total: -80.99 1.72 -79.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084211808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.375 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds