Wall clock time and date at job start Tue Mar 31 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00037 * 2 1 4 4 C 1.53008 * 109.46886 * 274.68861 * 3 2 1 5 5 H 1.08999 * 112.73639 * 315.35921 * 4 3 2 6 6 C 1.53491 * 113.46529 * 86.18027 * 4 3 2 7 7 C 1.53237 * 83.43063 * 140.67561 * 6 4 3 8 8 N 1.47064 * 113.46557 * 184.61535 * 4 3 2 9 9 C 1.36937 * 136.05926 * 38.06248 * 8 4 3 10 10 H 1.08004 * 120.00304 * 354.58680 * 9 8 4 11 11 C 1.38807 * 120.00286 * 174.85677 * 9 8 4 12 12 N 1.31621 * 119.99821 * 359.73196 * 11 9 8 13 13 Si 1.86797 * 120.00590 * 179.72524 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00062 * 13 11 9 15 15 H 1.48493 * 109.47566 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47294 * 300.00929 * 13 11 9 17 17 C 1.34781 * 119.99538 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99609 * 175.47347 * 17 2 1 19 19 C 1.50694 * 119.99844 * 355.48023 * 17 2 1 20 20 C 1.56241 * 116.69054 * 291.93249 * 19 17 2 21 21 C 1.56948 * 102.16571 * 200.71475 * 20 19 17 22 22 N 1.49515 * 105.46848 * 358.88004 * 21 20 19 23 23 C 1.49515 * 105.92392 * 289.05252 * 22 21 20 24 24 C 1.54665 * 105.28079 * 71.26525 * 23 22 21 25 25 C 1.50462 * 102.03698 * 35.46901 * 22 21 20 26 26 H 1.09004 * 109.47016 * 93.35891 * 1 2 3 27 27 H 1.08991 * 109.47672 * 213.36224 * 1 2 3 28 28 H 1.09004 * 109.46737 * 333.36261 * 1 2 3 29 29 H 1.09000 * 109.47176 * 154.69267 * 3 2 1 30 30 H 1.09001 * 109.47525 * 34.68978 * 3 2 1 31 31 H 1.08997 * 114.20772 * 254.43298 * 6 4 3 32 32 H 1.09005 * 114.21140 * 27.06345 * 6 4 3 33 33 H 1.09000 * 113.38809 * 219.28857 * 7 6 4 34 34 H 1.09002 * 113.46990 * 88.92705 * 7 6 4 35 35 H 0.96998 * 119.99949 * 179.97438 * 12 11 9 36 36 H 1.08994 * 110.67559 * 319.48818 * 20 19 17 37 37 H 1.09005 * 110.66496 * 82.61705 * 20 19 17 38 38 H 1.08992 * 109.92425 * 240.00457 * 21 20 19 39 39 H 1.09011 * 110.45904 * 118.03380 * 21 20 19 40 40 H 1.08998 * 110.28620 * 312.31348 * 23 22 21 41 41 H 1.09002 * 110.28311 * 190.21232 * 23 22 21 42 42 H 1.09005 * 110.66401 * 242.22447 * 24 23 22 43 43 H 1.09002 * 110.66684 * 119.08909 * 24 23 22 44 44 H 1.08996 * 111.90957 * 188.40201 * 25 22 21 45 45 H 1.09001 * 111.90932 * 62.19205 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3504 1.7693 -1.4378 5 1 2.6481 0.9808 -2.1290 6 6 1.1525 2.5940 -1.9284 7 6 2.2375 3.4500 -2.5903 8 7 3.1682 2.9864 -1.5503 9 6 4.2963 3.4755 -0.9475 10 1 4.7412 2.9421 -0.1204 11 6 4.8649 4.6598 -1.3958 12 7 4.3228 5.3098 -2.4037 13 14 6.3994 5.3310 -0.5687 14 1 7.4984 4.3391 -0.6846 15 1 6.8038 6.5980 -1.2292 16 1 6.1156 5.5898 0.8658 17 6 2.1389 -1.1673 0.0005 18 8 3.3488 -1.1690 -0.0824 19 6 1.3888 -2.4702 0.1039 20 6 0.6770 -2.7642 1.4634 21 6 0.5046 -4.3234 1.4160 22 7 1.0730 -4.7477 0.0998 23 6 0.1106 -4.2646 -0.9375 24 6 0.2780 -2.7273 -0.9643 25 6 2.2222 -3.7913 -0.0686 26 1 -0.3633 -0.0602 -1.0259 27 1 -0.3634 -0.8582 0.5651 28 1 -0.3633 0.9186 0.4608 29 1 3.1838 1.1188 0.4393 30 1 1.6475 2.0059 0.5849 31 1 0.5052 2.0681 -2.6302 32 1 0.6046 3.1023 -1.1349 33 1 2.0329 4.5196 -2.5442 34 1 2.5042 3.1142 -3.5924 35 1 4.7199 6.1376 -2.7168 36 1 1.3043 -2.4576 2.3004 37 1 -0.2923 -2.2672 1.5055 38 1 -0.5527 -4.5821 1.4720 39 1 1.0528 -4.7924 2.2332 40 1 -0.9095 -4.5288 -0.6588 41 1 0.3593 -4.6887 -1.9103 42 1 -0.6514 -2.2341 -0.6793 43 1 0.6061 -2.3931 -1.9486 44 1 2.6695 -3.8634 -1.0600 45 1 2.9672 -3.9080 0.7185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085927263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:26 Heat of formation + Delta-G solvation = 61.703914 kcal Electronic energy + Delta-G solvation = -24754.880339 eV Core-core repulsion = 21389.381334 eV Total energy + Delta-G solvation = -3365.499006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38573 -39.14960 -37.84690 -35.27865 -32.19056 -31.22983 -30.85993 -28.39444 -28.20811 -27.88827 -26.38807 -23.44665 -23.01580 -22.80410 -21.27693 -20.64155 -19.26049 -18.72126 -16.81625 -16.58751 -16.28305 -16.22658 -15.57174 -15.13359 -14.86090 -14.38127 -13.81738 -13.61557 -13.51395 -13.20654 -13.02466 -12.75806 -12.56333 -12.46716 -12.31624 -11.93234 -11.81827 -11.67942 -11.48415 -11.44467 -11.09651 -10.88061 -10.81295 -10.72189 -10.55638 -10.43067 -9.84757 -9.82746 -9.66433 -9.38031 -9.29449 -8.75758 -8.30482 -6.84006 -5.73269 -3.05002 2.66449 3.09087 3.43371 3.47526 3.49064 3.58216 4.16119 4.25499 4.50218 4.54387 4.67336 4.71461 4.79476 4.93022 5.03442 5.18400 5.25266 5.27956 5.31114 5.38492 5.46984 5.48843 5.52204 5.53996 5.57507 5.62443 5.75015 5.78508 5.83328 5.85566 5.97871 6.16579 6.20821 6.29633 6.36149 6.44961 6.55997 6.69223 6.88409 7.25899 7.42593 7.55729 7.59411 8.01948 8.33297 9.08510 9.74769 10.68718 11.44947 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.003728 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.824241 B = 7508.148110 C = 7982.080764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.604 5.604 3 C 0.115 3.885 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.167 4.167 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.216 4.216 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.544 3.456 18 O -0.528 6.528 19 C -0.128 4.128 20 C -0.135 4.135 21 C 0.014 3.986 22 N -0.467 5.467 23 C 0.012 3.988 24 C -0.141 4.141 25 C 0.040 3.960 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 -17.031 5.718 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.337 5.337 3 C -0.008 4.008 4 C 0.026 3.974 5 H 0.059 0.941 6 C -0.206 4.206 7 C 0.033 3.967 8 N -0.326 5.326 9 C -0.344 4.344 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.330 3.670 18 O -0.404 6.404 19 C -0.133 4.133 20 C -0.174 4.174 21 C -0.115 4.115 22 N -0.187 5.187 23 C -0.116 4.116 24 C -0.180 4.180 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.475 -17.526 5.679 22.825 hybrid contribution 0.586 1.417 0.262 1.556 sum -12.889 -16.109 5.941 21.469 Atomic orbital electron populations 1.22061 0.80137 1.02926 1.01830 1.47788 1.06789 1.06302 1.72846 1.21921 0.97350 0.82291 0.99225 1.22398 0.90476 0.91025 0.93504 0.94065 1.23694 0.96266 1.00008 1.00617 1.21866 0.85250 0.98455 0.91155 1.45666 1.29132 1.15435 1.42374 1.18882 1.00801 1.04159 1.10521 0.90217 1.24793 0.99172 0.98210 0.98163 1.69836 1.41324 1.17754 1.27895 0.86218 0.82996 0.78120 0.78572 1.21097 1.21580 1.21073 1.19430 0.87211 0.83805 0.76529 1.90748 1.13843 1.86926 1.48858 1.23755 0.96895 0.94869 0.97800 1.23667 1.00547 0.97284 0.95920 1.24008 1.00749 0.92925 0.93863 1.69987 1.04942 1.41485 1.02258 1.23619 0.97397 0.92979 0.97652 1.23409 0.97881 0.97487 0.99190 1.24324 0.94324 0.86581 1.03648 0.92508 0.91179 0.90913 0.89866 0.90514 0.92890 0.90653 0.91669 0.95776 0.93667 0.90571 0.90215 0.90360 0.89658 0.90331 0.89699 0.90081 0.90544 0.88968 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.94 59.85 0.54 1.27 16 2 N -0.60 -8.78 2.87 -181.57 -0.52 -9.30 16 3 C 0.12 2.11 5.40 -4.04 -0.02 2.09 16 4 C 0.13 2.82 4.32 -72.40 -0.31 2.51 16 5 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 6 C -0.17 -3.10 8.00 -26.36 -0.21 -3.31 16 7 C 0.16 3.80 7.26 -8.65 -0.06 3.74 16 8 N -0.60 -15.73 3.65 -177.18 -0.65 -16.38 16 9 C -0.22 -6.22 10.55 -15.06 -0.16 -6.38 16 10 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.92 11.65 55.49 0.65 -27.27 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.54 8.45 7.19 -10.99 -0.08 8.37 16 18 O -0.53 -10.70 16.13 5.56 0.09 -10.61 16 19 C -0.13 -1.43 0.92 -149.93 -0.14 -1.56 16 20 C -0.14 -1.17 5.68 -22.85 -0.13 -1.30 16 21 C 0.01 0.11 6.67 -0.23 0.00 0.11 16 22 N -0.47 -4.54 6.94 -220.54 -1.53 -6.07 16 23 C 0.01 0.10 6.61 -1.49 -0.01 0.09 16 24 C -0.14 -1.24 4.85 -24.12 -0.12 -1.36 16 25 C 0.04 0.46 6.09 0.44 0.00 0.46 16 26 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 27 H 0.07 0.55 3.54 -51.93 -0.18 0.36 16 28 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 29 H 0.08 1.78 7.35 -51.93 -0.38 1.40 16 30 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.32 7.94 -51.93 -0.41 0.90 16 33 H 0.06 1.70 7.38 -51.93 -0.38 1.32 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.56 5.97 -51.93 -0.31 0.25 16 38 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.57 5.89 -51.93 -0.31 0.27 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -33.82 346.38 -9.91 -43.73 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.34 Total: -1.46 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.80 Total: 4.43 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -2.05 Total: -59.02 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.82 -9.91 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085927263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.432 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds