Wall clock time and date at job start Tue Mar 31 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00037 * 2 1 4 4 C 1.53008 * 109.46886 * 274.68861 * 3 2 1 5 5 H 1.08999 * 112.73639 * 315.35921 * 4 3 2 6 6 C 1.53491 * 113.46529 * 86.18027 * 4 3 2 7 7 C 1.53237 * 83.43063 * 140.67561 * 6 4 3 8 8 N 1.47064 * 113.46557 * 184.61535 * 4 3 2 9 9 C 1.36937 * 136.05926 * 38.06248 * 8 4 3 10 10 H 1.08004 * 120.00304 * 354.58680 * 9 8 4 11 11 C 1.38807 * 120.00286 * 174.85677 * 9 8 4 12 12 N 1.31621 * 119.99821 * 359.73196 * 11 9 8 13 13 Si 1.86797 * 120.00590 * 179.72524 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00062 * 13 11 9 15 15 H 1.48493 * 109.47566 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47294 * 300.00929 * 13 11 9 17 17 C 1.34781 * 119.99538 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99609 * 175.47347 * 17 2 1 19 19 C 1.50694 * 119.99844 * 355.48023 * 17 2 1 20 20 C 1.56241 * 116.69054 * 291.93249 * 19 17 2 21 21 C 1.56948 * 102.16571 * 200.71475 * 20 19 17 22 22 N 1.49515 * 105.46848 * 358.88004 * 21 20 19 23 23 C 1.49515 * 105.92392 * 289.05252 * 22 21 20 24 24 C 1.54665 * 105.28079 * 71.26525 * 23 22 21 25 25 C 1.50462 * 102.03698 * 35.46901 * 22 21 20 26 26 H 1.09004 * 109.47016 * 93.35891 * 1 2 3 27 27 H 1.08991 * 109.47672 * 213.36224 * 1 2 3 28 28 H 1.09004 * 109.46737 * 333.36261 * 1 2 3 29 29 H 1.09000 * 109.47176 * 154.69267 * 3 2 1 30 30 H 1.09001 * 109.47525 * 34.68978 * 3 2 1 31 31 H 1.08997 * 114.20772 * 254.43298 * 6 4 3 32 32 H 1.09005 * 114.21140 * 27.06345 * 6 4 3 33 33 H 1.09000 * 113.38809 * 219.28857 * 7 6 4 34 34 H 1.09002 * 113.46990 * 88.92705 * 7 6 4 35 35 H 0.96998 * 119.99949 * 179.97438 * 12 11 9 36 36 H 1.08994 * 110.67559 * 319.48818 * 20 19 17 37 37 H 1.09005 * 110.66496 * 82.61705 * 20 19 17 38 38 H 1.08992 * 109.92425 * 240.00457 * 21 20 19 39 39 H 1.09011 * 110.45904 * 118.03380 * 21 20 19 40 40 H 1.08998 * 110.28620 * 312.31348 * 23 22 21 41 41 H 1.09002 * 110.28311 * 190.21232 * 23 22 21 42 42 H 1.09005 * 110.66401 * 242.22447 * 24 23 22 43 43 H 1.09002 * 110.66684 * 119.08909 * 24 23 22 44 44 H 1.08996 * 111.90957 * 188.40201 * 25 22 21 45 45 H 1.09001 * 111.90932 * 62.19205 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3504 1.7693 -1.4378 5 1 2.6481 0.9808 -2.1290 6 6 1.1525 2.5940 -1.9284 7 6 2.2375 3.4500 -2.5903 8 7 3.1682 2.9864 -1.5503 9 6 4.2963 3.4755 -0.9475 10 1 4.7412 2.9421 -0.1204 11 6 4.8649 4.6598 -1.3958 12 7 4.3228 5.3098 -2.4037 13 14 6.3994 5.3310 -0.5687 14 1 7.4984 4.3391 -0.6846 15 1 6.8038 6.5980 -1.2292 16 1 6.1156 5.5898 0.8658 17 6 2.1389 -1.1673 0.0005 18 8 3.3488 -1.1690 -0.0824 19 6 1.3888 -2.4702 0.1039 20 6 0.6770 -2.7642 1.4634 21 6 0.5046 -4.3234 1.4160 22 7 1.0730 -4.7477 0.0998 23 6 0.1106 -4.2646 -0.9375 24 6 0.2780 -2.7273 -0.9643 25 6 2.2222 -3.7913 -0.0686 26 1 -0.3633 -0.0602 -1.0259 27 1 -0.3634 -0.8582 0.5651 28 1 -0.3633 0.9186 0.4608 29 1 3.1838 1.1188 0.4393 30 1 1.6475 2.0059 0.5849 31 1 0.5052 2.0681 -2.6302 32 1 0.6046 3.1023 -1.1349 33 1 2.0329 4.5196 -2.5442 34 1 2.5042 3.1142 -3.5924 35 1 4.7199 6.1376 -2.7168 36 1 1.3043 -2.4576 2.3004 37 1 -0.2923 -2.2672 1.5055 38 1 -0.5527 -4.5821 1.4720 39 1 1.0528 -4.7924 2.2332 40 1 -0.9095 -4.5288 -0.6588 41 1 0.3593 -4.6887 -1.9103 42 1 -0.6514 -2.2341 -0.6793 43 1 0.6061 -2.3931 -1.9486 44 1 2.6695 -3.8634 -1.0600 45 1 2.9672 -3.9080 0.7185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085927263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:25 Heat of formation + Delta-G solvation = 36.474554 kcal Electronic energy + Delta-G solvation = -24755.974366 eV Core-core repulsion = 21389.381334 eV Total energy + Delta-G solvation = -3366.593033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25708 -40.49086 -39.43351 -36.56952 -34.31597 -32.19802 -31.50031 -29.93768 -29.54800 -29.12809 -27.43894 -25.45342 -24.47558 -23.46532 -22.40340 -21.47111 -21.08402 -19.82209 -18.70960 -17.59910 -17.53060 -17.13798 -16.88813 -16.37999 -16.22827 -15.95401 -15.38665 -15.12382 -14.55942 -14.27701 -14.07316 -13.82309 -13.72930 -13.59671 -13.46222 -13.14947 -13.03078 -12.97797 -12.70223 -12.66032 -12.46657 -12.38322 -12.28641 -12.23929 -11.85944 -11.65762 -11.50468 -11.26724 -11.22083 -10.88429 -10.81146 -10.01579 -9.64580 -8.94032 -7.94703 -5.27411 1.40866 1.44865 1.49755 1.51127 1.92453 2.45686 2.80970 3.26452 3.37689 3.45793 3.47415 3.65191 3.81940 3.90090 4.03474 4.10255 4.20354 4.28055 4.30198 4.37083 4.46520 4.52309 4.54115 4.60989 4.65653 4.75667 4.79079 4.83399 4.86297 4.92916 4.96456 4.97598 5.02059 5.04940 5.10803 5.17187 5.20252 5.43962 5.49208 5.51857 5.71430 5.71973 5.91470 6.40662 6.89108 7.13700 7.57000 8.58478 9.23338 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.003728 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.824241 B = 7508.148110 C = 7982.080764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.600 5.600 3 C 0.130 3.870 4 C 0.134 3.866 5 H 0.020 0.980 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.631 5.631 9 C -0.228 4.228 10 H 0.075 0.925 11 C -0.063 4.063 12 N -0.952 5.952 13 Si 0.976 3.024 14 H -0.284 1.284 15 H -0.289 1.289 16 H -0.272 1.272 17 C 0.537 3.463 18 O -0.590 6.590 19 C -0.131 4.131 20 C -0.127 4.127 21 C 0.016 3.984 22 N -0.476 5.476 23 C 0.015 3.985 24 C -0.132 4.132 25 C 0.036 3.964 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.008 0.992 35 H 0.249 0.751 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 -18.226 6.906 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C 0.006 3.994 4 C 0.027 3.973 5 H 0.037 0.963 6 C -0.162 4.162 7 C 0.023 3.977 8 N -0.357 5.357 9 C -0.356 4.356 10 H 0.093 0.907 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.197 1.197 17 C 0.325 3.675 18 O -0.471 6.471 19 C -0.136 4.136 20 C -0.165 4.165 21 C -0.112 4.112 22 N -0.196 5.196 23 C -0.114 4.114 24 C -0.171 4.171 25 C -0.094 4.094 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.942 -18.756 6.882 26.195 hybrid contribution 1.643 1.713 -0.140 2.378 sum -15.298 -17.043 6.742 23.874 Atomic orbital electron populations 1.22439 0.76632 1.05090 1.03564 1.47828 1.08759 1.04552 1.71970 1.21484 0.96402 0.84467 0.97054 1.22471 0.90612 0.89390 0.94857 0.96261 1.23451 0.94726 0.97352 1.00667 1.21916 0.87433 0.97806 0.90558 1.46074 1.29067 1.17804 1.42798 1.19172 1.01716 1.04222 1.10523 0.90726 1.25606 1.02213 0.98703 0.99139 1.70008 1.42655 1.17981 1.29404 0.85201 0.79233 0.77123 0.78111 1.21049 1.21493 1.19745 1.20248 0.86783 0.85382 0.75042 1.90716 1.16794 1.87895 1.51650 1.23635 0.97406 0.91824 1.00729 1.23690 1.01157 0.98160 0.93539 1.24086 1.02256 0.92070 0.92819 1.69963 1.04782 1.41066 1.03790 1.23698 0.98315 0.92150 0.97233 1.23424 0.97780 0.98354 0.97525 1.24231 0.95077 0.87920 1.02141 0.90951 0.88468 0.89390 0.93931 0.88854 0.88880 0.88544 0.94340 0.97445 0.94169 0.91784 0.87385 0.87554 0.89750 0.87500 0.89975 0.87147 0.91913 0.90707 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.94 127.77 1.14 2.13 16 2 N -0.60 -16.53 2.87 -846.74 -2.43 -18.96 16 3 C 0.13 4.75 5.40 86.38 0.47 5.21 16 4 C 0.13 5.64 4.32 41.79 0.18 5.82 16 5 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.12 -4.31 8.00 30.84 0.25 -4.07 16 7 C 0.15 7.23 7.26 83.09 0.60 7.83 16 8 N -0.63 -33.90 3.65 -714.47 -2.61 -36.50 16 9 C -0.23 -13.52 10.55 84.03 0.89 -12.64 16 10 H 0.07 4.36 7.83 -2.91 -0.02 4.34 16 11 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 12 N -0.95 -59.35 11.65 21.65 0.25 -59.09 16 13 Si 0.98 47.82 29.55 68.60 2.03 49.84 16 14 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 15 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 C 0.54 16.70 7.19 87.65 0.63 17.33 16 18 O -0.59 -25.35 16.13 -3.02 -0.05 -25.40 16 19 C -0.13 -2.72 0.92 -49.22 -0.05 -2.76 16 20 C -0.13 -1.79 5.68 33.11 0.19 -1.60 16 21 C 0.02 0.21 6.67 87.18 0.58 0.79 16 22 N -0.48 -8.25 6.94 -851.65 -5.91 -14.16 16 23 C 0.01 0.19 6.61 86.36 0.57 0.76 16 24 C -0.13 -1.89 4.85 32.29 0.16 -1.74 16 25 C 0.04 0.82 6.09 87.06 0.53 1.35 16 26 H 0.07 0.97 7.83 -2.38 -0.02 0.95 16 27 H 0.10 0.99 3.54 -2.39 -0.01 0.98 16 28 H 0.09 1.18 7.90 -2.38 -0.02 1.16 16 29 H 0.04 1.90 7.35 -2.39 -0.02 1.88 16 30 H 0.09 3.07 7.68 -2.39 -0.02 3.05 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.10 3.01 7.94 -2.38 -0.02 2.99 16 33 H 0.04 2.05 7.38 -2.39 -0.02 2.03 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.91 5.97 -2.38 -0.01 0.90 16 38 H 0.11 0.79 7.69 -2.39 -0.02 0.78 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.11 0.82 7.69 -2.39 -0.02 0.80 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 0.93 5.89 -2.38 -0.01 0.92 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -79.32 346.38 -1.14 -80.46 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.97 Total: 8.70 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.60 Total: 15.11 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -10.70 Total: -128.72 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -79.32 -1.14 -80.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085927263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.939 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds