Wall clock time and date at job start Tue Mar 31 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47130 * 89.99986 * 3 2 1 5 5 H 1.48503 * 109.47499 * 330.00121 * 3 2 1 6 6 H 1.48504 * 109.46909 * 209.99859 * 3 2 1 7 7 C 1.38803 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99809 * 20.96024 * 7 2 1 9 9 N 1.36937 * 120.00091 * 200.96236 * 7 2 1 10 10 C 1.50241 * 130.83585 * 9.92439 * 9 7 2 11 11 H 1.09001 * 115.85881 * 0.39763 * 10 9 7 12 12 C 1.55846 * 101.04913 * 234.00555 * 10 9 7 13 13 C 1.54220 * 103.56474 * 327.15061 * 12 10 9 14 14 C 1.50236 * 130.83902 * 190.26531 * 9 7 2 15 15 H 1.08999 * 115.85898 * 359.60351 * 14 9 7 16 16 C 1.55849 * 101.05035 * 233.92886 * 14 9 7 17 17 H 1.09006 * 110.62231 * 85.55541 * 16 14 9 18 18 N 1.46500 * 110.62549 * 208.57317 * 16 14 9 19 19 C 1.34777 * 119.99992 * 274.61418 * 18 16 14 20 20 O 1.21564 * 119.99838 * 0.02562 * 19 18 16 21 21 C 1.47752 * 120.00049 * 180.02562 * 19 18 16 22 22 C 1.39351 * 124.11761 * 179.73082 * 21 19 18 23 23 N 1.30091 * 112.14651 * 179.81991 * 22 21 19 24 24 S 1.55915 * 108.75312 * 0.42452 * 23 22 21 25 25 N 1.31489 * 124.11518 * 0.02562 * 21 19 18 26 26 C 1.54851 * 103.44612 * 327.06533 * 16 14 9 27 27 H 0.96996 * 119.99643 * 174.93191 * 1 2 3 28 28 H 1.08994 * 110.62559 * 85.55443 * 12 10 9 29 29 H 1.09006 * 110.62515 * 208.41334 * 12 10 9 30 30 H 1.09004 * 110.64396 * 241.43601 * 13 12 10 31 31 H 1.09000 * 110.49647 * 118.49811 * 13 12 10 32 32 H 0.96998 * 120.00023 * 94.62105 * 18 16 14 33 33 H 1.08005 * 123.92347 * 359.97438 * 22 21 19 34 34 H 1.08997 * 110.62420 * 118.48892 * 26 16 14 35 35 H 1.08999 * 110.62537 * 241.51018 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4476 2.6528 -0.7000 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5239 -2.1063 -0.3355 9 7 3.3117 -1.2415 0.4237 10 6 4.1525 -0.2038 1.1118 11 1 3.6589 0.7450 1.3222 12 6 5.3856 -0.1400 0.1609 13 6 5.5129 -1.5846 -0.3638 14 6 4.3402 -2.3332 0.3384 15 1 4.0119 -3.2599 -0.1324 16 6 4.7725 -2.4537 1.8309 17 1 4.1023 -3.1218 2.3720 18 7 6.1582 -2.9184 1.9309 19 6 6.4302 -4.2381 1.9017 20 8 5.5256 -5.0428 1.7920 21 6 7.8277 -4.7068 2.0031 22 6 8.2053 -6.0481 1.9877 23 7 9.4940 -6.1960 2.0874 24 16 10.1529 -4.7874 2.2005 25 7 8.8661 -3.9093 2.1246 26 6 4.6434 -1.0045 2.3612 27 1 -0.4849 -0.8368 -0.0742 28 1 5.2004 0.5501 -0.6622 29 1 6.2802 0.1519 0.7111 30 1 6.4715 -2.0155 -0.0745 31 1 5.3908 -1.6095 -1.4467 32 1 6.8800 -2.2763 2.0182 33 1 7.5093 -6.8693 1.9003 34 1 3.9093 -0.9539 3.1653 35 1 5.6105 -0.6316 2.6986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095192720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:17 Heat of formation + Delta-G solvation = 85.348443 kcal Electronic energy + Delta-G solvation = -21637.845285 eV Core-core repulsion = 18379.032354 eV Total energy + Delta-G solvation = -3258.812931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34753 -40.04142 -38.35243 -34.46592 -33.62972 -32.47758 -29.76423 -29.32340 -28.62526 -27.30538 -24.01485 -23.08910 -21.59800 -20.57375 -20.07792 -19.67183 -18.82120 -17.93358 -17.23657 -16.32581 -16.05444 -15.80876 -15.42234 -14.93105 -14.13283 -14.05913 -13.46174 -13.21696 -12.66310 -12.47061 -12.02595 -11.84975 -11.71629 -11.50416 -11.46951 -11.33403 -11.32478 -11.19094 -10.77716 -10.35960 -10.17451 -9.96234 -9.68134 -9.49852 -9.46295 -9.18713 -8.93027 -8.53199 -7.22845 -6.31047 -3.18773 0.14508 1.09557 1.32548 1.33636 3.04891 3.09300 3.33319 3.48304 3.64696 4.23335 4.57612 4.61799 4.78010 4.84706 5.14470 5.19611 5.20986 5.40371 5.57937 5.65708 5.74679 5.81495 5.91234 5.94456 6.11179 6.22174 6.27749 6.33744 6.39732 6.58402 6.69494 6.85177 6.87179 7.39650 7.53109 8.13205 8.28410 8.99613 9.52511 10.31213 11.18269 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.037239 B = 0.004027 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.717659 B = 6951.654621 C = 7350.299033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.023 4.023 3 Si 1.060 2.940 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.311 4.311 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.119 3.881 11 H 0.097 0.903 12 C -0.138 4.138 13 C -0.132 4.132 14 C 0.134 3.866 15 H 0.094 0.906 16 C 0.128 3.872 17 H 0.092 0.908 18 N -0.690 5.690 19 C 0.598 3.402 20 O -0.521 6.521 21 C 0.018 3.982 22 C 0.089 3.911 23 N -0.578 5.578 24 S 0.708 5.292 25 N -0.547 5.547 26 C -0.134 4.134 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.215 0.785 34 H 0.074 0.926 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.855 -6.579 5.349 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.894 3.106 4 H -0.224 1.224 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.438 4.438 8 H 0.097 0.903 9 N -0.324 5.324 10 C 0.012 3.988 11 H 0.115 0.885 12 C -0.177 4.177 13 C -0.172 4.172 14 C 0.025 3.975 15 H 0.112 0.888 16 C 0.023 3.977 17 H 0.110 0.890 18 N -0.340 5.340 19 C 0.377 3.623 20 O -0.396 6.396 21 C -0.157 4.157 22 C -0.105 4.105 23 N -0.419 5.419 24 S 0.750 5.250 25 N -0.396 5.396 26 C -0.174 4.174 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.777 -4.984 5.432 23.941 hybrid contribution -1.136 -1.868 -0.224 2.198 sum 21.641 -6.852 5.207 23.289 Atomic orbital electron populations 1.70907 1.05614 1.29812 1.50480 1.25765 0.96408 1.00742 0.99372 0.83903 0.74932 0.75969 0.75811 1.22433 1.22891 1.20201 1.20105 0.84214 0.96429 1.43006 0.90289 1.46843 1.08557 1.10340 1.66614 1.23311 0.90674 0.93719 0.91119 0.88536 1.23053 0.97631 0.97224 0.99838 1.22823 0.98261 0.95980 1.00089 1.23172 0.88736 0.93120 0.92509 0.88772 1.22684 0.79840 0.95588 0.99604 0.88970 1.46047 1.10414 1.05993 1.71591 1.16752 0.84340 0.83389 0.77823 1.90854 1.44759 1.54195 1.49836 1.22702 0.95230 0.90577 1.07226 1.23820 0.90518 0.97603 0.98522 1.72273 1.13627 1.32394 1.23600 1.79049 1.15438 0.82936 1.47612 1.72476 1.06392 1.39919 1.20838 1.23233 1.00530 0.94412 0.99238 0.92738 0.91485 0.92571 0.92550 0.92390 0.75911 0.76864 0.90733 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.70 55.49 0.76 -28.19 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 3 Si 1.06 25.84 25.01 -169.99 -4.25 21.59 16 4 H -0.29 -6.79 6.60 56.52 0.37 -6.42 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.15 4.94 56.52 0.28 -5.87 16 7 C -0.31 -8.76 10.81 -15.06 -0.16 -8.92 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 9 N -0.60 -14.21 2.83 -145.54 -0.41 -14.62 16 10 C 0.12 2.39 3.61 -62.54 -0.23 2.16 16 11 H 0.10 2.08 3.44 -51.93 -0.18 1.90 16 12 C -0.14 -2.40 6.20 -24.57 -0.15 -2.55 16 13 C -0.13 -2.27 6.29 -24.57 -0.15 -2.42 16 14 C 0.13 2.64 5.34 -62.80 -0.34 2.31 16 15 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 16 C 0.13 2.19 3.06 -65.43 -0.20 1.99 16 17 H 0.09 1.73 7.72 -51.93 -0.40 1.33 16 18 N -0.69 -9.59 3.62 -52.36 -0.19 -9.78 16 19 C 0.60 8.55 7.82 -12.37 -0.10 8.45 16 20 O -0.52 -8.99 16.55 5.31 0.09 -8.90 16 21 C 0.02 0.21 6.81 -83.71 -0.57 -0.36 16 22 C 0.09 0.93 11.22 -17.87 -0.20 0.73 16 23 N -0.58 -5.72 11.41 19.42 0.22 -5.50 16 24 S 0.71 5.48 23.69 -107.50 -2.55 2.93 16 25 N -0.55 -5.67 11.00 23.17 0.26 -5.42 16 26 C -0.13 -2.24 6.22 -23.98 -0.15 -2.39 16 27 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 28 H 0.07 1.24 6.51 -51.93 -0.34 0.91 16 29 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 30 H 0.06 0.84 6.50 -51.93 -0.34 0.50 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.40 4.91 7.62 -40.82 -0.31 4.59 16 33 H 0.22 1.88 8.06 -52.48 -0.42 1.45 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 LS Contribution 295.59 15.07 4.45 4.45 Total: -1.00 -32.61 295.59 -7.74 -40.34 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.77 Total: 4.88 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.34 Total: -1.78 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.64 Total: -63.50 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.25 Total: 21.59 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -2.55 Total: 2.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.61 -7.74 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095192720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.689 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds