Wall clock time and date at job start Tue Mar 31 2020 03:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47130 * 89.99986 * 3 2 1 5 5 H 1.48503 * 109.47499 * 330.00121 * 3 2 1 6 6 H 1.48504 * 109.46909 * 209.99859 * 3 2 1 7 7 C 1.38803 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99809 * 20.96024 * 7 2 1 9 9 N 1.36937 * 120.00091 * 200.96236 * 7 2 1 10 10 C 1.50241 * 130.83585 * 9.92439 * 9 7 2 11 11 H 1.09001 * 115.85881 * 0.39763 * 10 9 7 12 12 C 1.55846 * 101.04913 * 234.00555 * 10 9 7 13 13 C 1.54220 * 103.56474 * 327.15061 * 12 10 9 14 14 C 1.50236 * 130.83902 * 190.26531 * 9 7 2 15 15 H 1.08999 * 115.85898 * 359.60351 * 14 9 7 16 16 C 1.55849 * 101.05035 * 233.92886 * 14 9 7 17 17 H 1.09006 * 110.62231 * 85.55541 * 16 14 9 18 18 N 1.46500 * 110.62549 * 208.57317 * 16 14 9 19 19 C 1.34777 * 119.99992 * 274.61418 * 18 16 14 20 20 O 1.21564 * 119.99838 * 0.02562 * 19 18 16 21 21 C 1.47752 * 120.00049 * 180.02562 * 19 18 16 22 22 C 1.39351 * 124.11761 * 179.73082 * 21 19 18 23 23 N 1.30091 * 112.14651 * 179.81991 * 22 21 19 24 24 S 1.55915 * 108.75312 * 0.42452 * 23 22 21 25 25 N 1.31489 * 124.11518 * 0.02562 * 21 19 18 26 26 C 1.54851 * 103.44612 * 327.06533 * 16 14 9 27 27 H 0.96996 * 119.99643 * 174.93191 * 1 2 3 28 28 H 1.08994 * 110.62559 * 85.55443 * 12 10 9 29 29 H 1.09006 * 110.62515 * 208.41334 * 12 10 9 30 30 H 1.09004 * 110.64396 * 241.43601 * 13 12 10 31 31 H 1.09000 * 110.49647 * 118.49811 * 13 12 10 32 32 H 0.96998 * 120.00023 * 94.62105 * 18 16 14 33 33 H 1.08005 * 123.92347 * 359.97438 * 22 21 19 34 34 H 1.08997 * 110.62420 * 118.48892 * 26 16 14 35 35 H 1.08999 * 110.62537 * 241.51018 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4476 2.6528 -0.7000 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5239 -2.1063 -0.3355 9 7 3.3117 -1.2415 0.4237 10 6 4.1525 -0.2038 1.1118 11 1 3.6589 0.7450 1.3222 12 6 5.3856 -0.1400 0.1609 13 6 5.5129 -1.5846 -0.3638 14 6 4.3402 -2.3332 0.3384 15 1 4.0119 -3.2599 -0.1324 16 6 4.7725 -2.4537 1.8309 17 1 4.1023 -3.1218 2.3720 18 7 6.1582 -2.9184 1.9309 19 6 6.4302 -4.2381 1.9017 20 8 5.5256 -5.0428 1.7920 21 6 7.8277 -4.7068 2.0031 22 6 8.2053 -6.0481 1.9877 23 7 9.4940 -6.1960 2.0874 24 16 10.1529 -4.7874 2.2005 25 7 8.8661 -3.9093 2.1246 26 6 4.6434 -1.0045 2.3612 27 1 -0.4849 -0.8368 -0.0742 28 1 5.2004 0.5501 -0.6622 29 1 6.2802 0.1519 0.7111 30 1 6.4715 -2.0155 -0.0745 31 1 5.3908 -1.6095 -1.4467 32 1 6.8800 -2.2763 2.0182 33 1 7.5093 -6.8693 1.9003 34 1 3.9093 -0.9539 3.1653 35 1 5.6105 -0.6316 2.6986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095192720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:16 Heat of formation + Delta-G solvation = 60.297847 kcal Electronic energy + Delta-G solvation = -21638.931560 eV Core-core repulsion = 18379.032354 eV Total energy + Delta-G solvation = -3259.899206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26484 -41.36071 -39.59908 -35.75257 -34.78853 -34.24790 -31.36486 -30.92280 -30.02571 -28.29665 -25.68104 -24.29392 -22.90076 -22.01270 -21.46550 -20.53409 -20.19687 -19.49444 -18.71172 -17.68539 -17.17906 -17.06022 -16.31621 -16.29375 -15.53208 -15.28424 -15.24837 -15.09988 -14.04316 -13.57165 -13.46233 -13.26083 -13.12360 -12.99260 -12.61402 -12.54114 -12.45026 -12.24559 -12.08307 -11.90399 -11.55800 -11.46700 -11.22337 -11.11306 -11.06053 -10.73138 -10.28617 -10.03887 -9.22485 -8.60128 -5.39250 -0.64309 0.35441 0.45946 0.65703 1.38098 1.56051 1.73085 1.96907 2.01793 2.56921 3.01154 3.21892 3.42595 3.66184 3.77040 3.84545 3.94376 4.03307 4.22374 4.28101 4.42145 4.48867 4.51132 4.62165 4.70243 4.87171 4.97927 5.05835 5.15983 5.28418 5.32920 5.36089 5.53680 5.56734 6.04801 6.43222 6.77327 7.05003 7.40160 8.24701 8.90353 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.037239 B = 0.004027 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.717659 B = 6951.654621 C = 7350.299033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.085 4.085 3 Si 1.103 2.897 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.242 1.242 7 C -0.296 4.296 8 H 0.035 0.965 9 N -0.630 5.630 10 C 0.102 3.898 11 H 0.087 0.913 12 C -0.130 4.130 13 C -0.119 4.119 14 C 0.121 3.879 15 H 0.066 0.934 16 C 0.145 3.855 17 H 0.066 0.934 18 N -0.678 5.678 19 C 0.600 3.400 20 O -0.560 6.560 21 C -0.002 4.002 22 C 0.086 3.914 23 N -0.601 5.601 24 S 0.805 5.195 25 N -0.558 5.558 26 C -0.122 4.122 27 H 0.244 0.756 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.419 0.581 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.935 -5.441 6.474 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.277 4.277 3 Si 0.930 3.070 4 H -0.198 1.198 5 H -0.244 1.244 6 H -0.166 1.166 7 C -0.424 4.424 8 H 0.053 0.947 9 N -0.355 5.355 10 C -0.003 4.003 11 H 0.105 0.895 12 C -0.168 4.168 13 C -0.159 4.159 14 C 0.013 3.987 15 H 0.085 0.915 16 C 0.039 3.961 17 H 0.084 0.916 18 N -0.330 5.330 19 C 0.382 3.618 20 O -0.437 6.437 21 C -0.174 4.174 22 C -0.105 4.105 23 N -0.443 5.443 24 S 0.846 5.154 25 N -0.411 5.411 26 C -0.162 4.162 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 27.927 -3.887 6.580 28.954 hybrid contribution -2.528 -2.411 -0.555 3.538 sum 25.399 -6.298 6.025 26.853 Atomic orbital electron populations 1.71039 1.07085 1.28718 1.54293 1.27167 0.96300 1.04552 0.99636 0.83432 0.74874 0.71375 0.77330 1.19823 1.24443 1.16644 1.19895 0.86671 0.94757 1.41107 0.94662 1.46884 1.07927 1.13062 1.67602 1.23623 0.90942 0.92764 0.92923 0.89528 1.23040 0.97986 0.96580 0.99243 1.22729 0.98078 0.95900 0.99153 1.23316 0.88950 0.91584 0.94827 0.91531 1.22156 0.81247 0.95804 0.96931 0.91615 1.45772 1.09241 1.06357 1.71666 1.17053 0.85284 0.82971 0.76523 1.90842 1.46471 1.55129 1.51300 1.22116 0.93997 0.91092 1.10242 1.23804 0.90874 0.97440 0.98402 1.72156 1.13496 1.34322 1.24330 1.78742 1.12581 0.80701 1.43381 1.72237 1.07080 1.40962 1.20821 1.23172 1.02675 0.92952 0.97372 0.94699 0.92395 0.87667 0.89399 0.93458 0.74186 0.76460 0.91495 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.49 13.70 21.65 0.30 -63.19 16 2 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 3 Si 1.10 52.16 25.01 68.60 1.72 53.88 16 4 H -0.27 -11.62 6.60 99.48 0.66 -10.97 16 5 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 6 H -0.24 -9.98 4.94 99.48 0.49 -9.49 16 7 C -0.30 -17.49 10.81 84.03 0.91 -16.58 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 9 N -0.63 -30.02 2.83 -614.36 -1.74 -31.76 16 10 C 0.10 3.85 3.61 46.39 0.17 4.02 16 11 H 0.09 3.46 3.44 -2.39 -0.01 3.45 16 12 C -0.13 -3.91 6.20 31.99 0.20 -3.71 16 13 C -0.12 -3.76 6.29 31.99 0.20 -3.56 16 14 C 0.12 4.78 5.34 46.23 0.25 5.02 16 15 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 16 C 0.15 4.76 3.06 46.61 0.14 4.90 16 17 H 0.07 2.52 7.72 -2.38 -0.02 2.50 16 18 N -0.68 -16.99 3.62 -437.85 -1.59 -18.58 16 19 C 0.60 16.30 7.82 86.76 0.68 16.98 16 20 O -0.56 -19.49 16.55 -3.92 -0.06 -19.55 16 21 C 0.00 -0.04 6.81 41.98 0.29 0.25 16 22 C 0.09 1.62 11.22 85.22 0.96 2.58 16 23 N -0.60 -10.08 11.41 -92.48 -1.06 -11.14 16 24 S 0.80 9.09 23.69 -56.49 -1.34 7.75 16 25 N -0.56 -9.38 11.00 -80.60 -0.89 -10.27 16 26 C -0.12 -3.68 6.22 32.38 0.20 -3.48 16 27 H 0.24 16.25 8.73 -92.71 -0.81 15.44 16 28 H 0.06 1.88 6.51 -2.39 -0.02 1.87 16 29 H 0.11 2.21 7.83 -2.38 -0.02 2.19 16 30 H 0.09 2.22 6.50 -2.39 -0.02 2.21 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.42 8.13 7.62 -92.71 -0.71 7.43 16 33 H 0.22 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.34 7.35 -2.39 -0.02 2.33 16 Total: -1.00 -76.34 295.59 -0.07 -76.41 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.14 Total: 14.66 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.45 Total: 1.80 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -4.97 Total: -134.94 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 1.72 Total: 53.88 kcal Atomic # 16 Polarization: 9.09 SS G_CDS: -1.34 Total: 7.75 kcal Total: -76.34 -0.07 -76.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095192720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.706 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds