Wall clock time and date at job start Tue Mar 31 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46900 * 111.00286 * 2 1 4 4 C 1.46898 * 111.00081 * 123.95985 * 2 1 3 5 5 H 1.09004 * 109.46846 * 186.04249 * 4 2 1 6 6 C 1.50700 * 109.47277 * 66.04737 * 4 2 1 7 7 O 1.21290 * 119.99897 * 347.61776 * 6 4 2 8 8 N 1.34775 * 120.00513 * 167.61957 * 6 4 2 9 9 C 1.46497 * 120.00485 * 183.98997 * 8 6 4 10 10 H 1.09005 * 115.51104 * 9.58624 * 9 8 6 11 11 C 1.52998 * 117.44264 * 224.24306 * 9 8 6 12 12 H 1.08996 * 119.54469 * 4.11536 * 11 9 8 13 13 C 1.57697 * 116.10937 * 161.64080 * 11 9 8 14 14 N 1.48141 * 104.67646 * 87.30712 * 13 11 9 15 15 C 1.36938 * 127.84257 * 139.77776 * 14 13 11 16 16 H 1.08007 * 119.99579 * 344.21509 * 15 14 13 17 17 C 1.38803 * 120.00286 * 164.21438 * 15 14 13 18 18 N 1.31613 * 120.00427 * 350.79782 * 17 15 14 19 19 Si 1.86803 * 119.99896 * 170.79898 * 17 15 14 20 20 H 1.48497 * 109.47226 * 60.00215 * 19 17 15 21 21 H 1.48497 * 109.47041 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47231 * 300.00119 * 19 17 15 23 23 C 1.48143 * 104.32404 * 319.77107 * 14 13 11 24 24 C 1.52998 * 117.44379 * 155.00114 * 9 8 6 25 25 H 1.08998 * 119.54161 * 355.88330 * 24 9 8 26 26 C 1.52998 * 109.47035 * 306.04529 * 4 2 1 27 27 C 1.53003 * 117.51741 * 114.30370 * 26 4 2 28 28 C 1.53005 * 60.00115 * 107.47867 * 27 26 4 29 29 H 1.09000 * 109.47269 * 296.03833 * 1 2 3 30 30 H 1.09001 * 109.47576 * 56.04573 * 1 2 3 31 31 H 1.09007 * 109.47425 * 176.04188 * 1 2 3 32 32 H 1.08996 * 109.47005 * 183.94969 * 3 2 1 33 33 H 1.08992 * 109.47302 * 303.95880 * 3 2 1 34 34 H 1.09001 * 109.46366 * 63.95857 * 3 2 1 35 35 H 0.97006 * 119.99423 * 3.99582 * 8 6 4 36 36 H 1.09002 * 110.92084 * 328.22304 * 13 11 9 37 37 H 1.09002 * 109.83488 * 205.83814 * 13 11 9 38 38 H 0.96998 * 120.00449 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.41377 * 280.80383 * 23 14 13 40 40 H 1.08996 * 110.51032 * 158.41746 * 23 14 13 41 41 H 1.08993 * 115.54976 * 328.60014 * 26 4 2 42 42 H 1.09000 * 117.49528 * 214.97187 * 27 26 4 43 43 H 1.08996 * 117.49898 * 359.97438 * 27 26 4 44 44 H 1.08999 * 117.49698 * 252.50936 * 28 27 26 45 45 H 1.08994 * 117.51645 * 107.47903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 3.0797 -0.6612 1.1754 6 6 1.6369 -2.2205 0.9726 7 8 0.8242 -2.5538 0.1362 8 7 2.2193 -3.1510 1.7545 9 6 1.9372 -4.5719 1.5364 10 1 1.3808 -4.8062 0.6288 11 6 1.6669 -5.4347 2.7707 12 1 1.6240 -4.9672 3.7544 13 6 0.9406 -6.8101 2.5106 14 7 2.0357 -7.7627 2.2143 15 6 2.1531 -9.0628 2.6279 16 1 1.5405 -9.4290 3.4386 17 6 3.0593 -9.9101 2.0053 18 7 3.6733 -9.5246 0.9069 19 14 3.4074 -11.5978 2.7265 20 1 2.1500 -12.3866 2.7696 21 1 4.4049 -12.3013 1.8808 22 1 3.9444 -11.4468 4.1028 23 6 2.9751 -6.9898 1.3688 24 6 2.9933 -5.5791 1.9959 25 1 3.9384 -5.2191 2.4024 26 6 1.3857 -0.2346 2.4362 27 6 0.4615 -1.1703 3.2181 28 6 1.8628 -0.8603 3.7484 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0253 -0.0709 32 1 3.0827 1.3431 -0.0708 33 1 1.5898 1.9163 -0.8523 34 1 1.7044 1.8722 0.9234 35 1 2.8252 -2.8798 2.4619 36 1 0.2606 -6.7367 1.6619 37 1 0.4006 -7.1183 3.4058 38 1 4.3063 -10.1168 0.4717 39 1 2.6129 -6.9445 0.3417 40 1 3.9705 -7.4327 1.4007 41 1 1.1478 0.8291 2.4430 42 1 -0.3844 -0.7221 3.7392 43 1 0.2873 -2.1646 2.8070 44 1 2.6106 -1.6508 3.6864 45 1 1.9391 -0.2081 4.6184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114409563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:34 Heat of formation + Delta-G solvation = 76.815342 kcal Electronic energy + Delta-G solvation = -24218.097625 eV Core-core repulsion = 20853.253900 eV Total energy + Delta-G solvation = -3364.843725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75003 -38.71400 -37.28332 -36.05770 -34.32133 -32.56563 -30.35958 -28.58480 -27.66087 -27.00835 -25.58868 -23.14431 -22.82933 -22.62708 -20.98316 -20.49179 -19.51757 -19.26854 -17.00608 -16.86296 -16.77306 -16.12481 -15.70816 -14.88292 -14.72443 -14.59334 -14.16021 -13.71263 -13.46147 -13.30312 -12.92622 -12.71917 -12.62174 -12.25738 -12.12453 -11.96800 -11.78398 -11.70219 -11.47996 -11.32220 -10.95669 -10.81125 -10.77850 -10.49087 -10.34932 -10.19790 -10.15497 -9.73369 -9.53983 -9.19882 -8.73201 -8.46542 -8.29555 -6.86801 -5.79662 -3.14112 2.62710 2.93534 3.38990 3.43399 3.44805 3.46623 3.85143 4.27221 4.35683 4.47099 4.50844 4.62455 4.65968 4.95259 5.01284 5.14050 5.17064 5.23473 5.37016 5.37917 5.40807 5.49308 5.53968 5.55796 5.59599 5.63366 5.74379 5.74892 5.86005 5.86981 6.06938 6.18207 6.29013 6.52491 6.69142 6.69683 6.84613 6.86307 6.89397 7.35331 7.53215 7.59399 7.71336 8.20483 8.32098 9.10809 9.73656 10.50863 11.34685 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.003162 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.138656 B = 8852.207365 C = 9131.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.520 5.520 3 C 0.022 3.978 4 C 0.096 3.904 5 H 0.106 0.894 6 C 0.527 3.473 7 O -0.519 6.519 8 N -0.700 5.700 9 C 0.095 3.905 10 H 0.131 0.869 11 C -0.185 4.185 12 H 0.106 0.894 13 C 0.158 3.842 14 N -0.593 5.593 15 C -0.229 4.229 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.186 3.814 24 C -0.180 4.180 25 H 0.100 0.900 26 C -0.186 4.186 27 C -0.176 4.176 28 C -0.172 4.172 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.395 0.605 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.255 0.745 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 22.173 3.742 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.126 4.126 4 C -0.016 4.016 5 H 0.124 0.876 6 C 0.313 3.687 7 O -0.394 6.394 8 N -0.351 5.351 9 C -0.010 4.010 10 H 0.149 0.851 11 C -0.207 4.207 12 H 0.124 0.876 13 C 0.031 3.969 14 N -0.316 5.316 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.743 3.257 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.060 3.940 24 C -0.201 4.201 25 H 0.118 0.882 26 C -0.206 4.206 27 C -0.213 4.213 28 C -0.210 4.210 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.231 0.769 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.702 21.441 2.588 21.765 hybrid contribution 0.406 -0.121 1.593 1.648 sum -2.296 21.320 4.181 21.847 Atomic orbital electron populations 1.22704 0.86200 1.05158 0.99567 1.61930 1.09488 1.13187 1.39610 1.22457 1.00802 0.88702 1.00640 1.21303 1.00644 0.91391 0.88283 0.87581 1.20183 0.80926 0.86950 0.80659 1.90631 1.32642 1.81596 1.34526 1.45628 1.48128 1.05797 1.35580 1.21881 1.02950 0.77073 0.99143 0.85115 1.25086 1.01381 0.98779 0.95435 0.87650 1.21690 0.90714 0.86521 0.97993 1.45102 1.18728 1.08641 1.59093 1.18942 1.20285 0.84283 1.12199 0.90590 1.24898 1.00710 0.98169 0.96392 1.69884 1.31132 1.36746 1.18275 0.86188 0.77804 0.83507 0.78173 1.20958 1.21533 1.21104 1.21049 0.97328 0.83859 0.91758 1.24630 0.92700 0.98346 1.04458 0.88203 1.22870 1.05905 0.99448 0.92352 1.23210 0.93825 1.01054 1.03167 1.23001 0.98142 1.03231 0.96600 0.95739 0.91928 0.88161 0.91302 0.91008 0.95427 0.76922 0.95189 0.93202 0.93457 0.95592 0.89182 0.86890 0.88581 0.87651 0.88743 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.86 60.06 0.53 0.66 16 2 N -0.52 -5.82 4.80 -244.59 -1.17 -6.99 16 3 C 0.02 0.18 9.39 60.06 0.56 0.74 16 4 C 0.10 1.02 2.50 -68.87 -0.17 0.85 16 5 H 0.11 0.98 8.06 -51.93 -0.42 0.56 16 6 C 0.53 7.35 5.05 -10.99 -0.06 7.29 16 7 O -0.52 -9.20 13.44 5.55 0.07 -9.13 16 8 N -0.70 -9.25 4.60 -53.81 -0.25 -9.50 16 9 C 0.10 1.59 5.91 -67.93 -0.40 1.19 16 10 H 0.13 2.52 7.43 -51.93 -0.39 2.13 16 11 C -0.19 -3.25 7.34 -87.38 -0.64 -3.89 16 12 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.16 3.34 7.10 -0.57 0.00 3.34 16 14 N -0.59 -15.19 3.38 -166.73 -0.56 -15.76 16 15 C -0.23 -6.38 10.35 -15.06 -0.16 -6.53 16 16 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 17 C 0.00 -0.12 5.40 -17.44 -0.09 -0.22 16 18 N -0.91 -26.77 10.88 55.49 0.60 -26.17 16 19 Si 0.91 21.87 29.56 -169.99 -5.03 16.85 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 C 0.19 4.48 5.69 -2.41 -0.01 4.46 16 24 C -0.18 -3.37 6.98 -89.22 -0.62 -3.99 16 25 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 26 C -0.19 -1.62 4.03 -90.62 -0.37 -1.98 16 27 C -0.18 -1.68 9.58 -26.73 -0.26 -1.94 16 28 C -0.17 -1.35 9.84 -26.72 -0.26 -1.61 16 29 H 0.02 0.24 6.74 -51.93 -0.35 -0.11 16 30 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.10 1.41 5.47 -51.93 -0.28 1.13 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.03 0.19 6.56 -51.93 -0.34 -0.15 16 35 H 0.40 4.23 6.42 -40.82 -0.26 3.97 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 2.40 6.54 -51.93 -0.34 2.07 16 41 H 0.11 0.90 6.36 -51.93 -0.33 0.57 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.11 1.27 6.07 -51.93 -0.31 0.96 16 44 H 0.09 0.72 5.86 -51.93 -0.30 0.41 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -31.46 349.01 -10.12 -41.59 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.10 Total: 5.48 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.95 Total: -1.63 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -1.38 Total: -58.42 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.46 -10.12 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114409563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.402 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds