Wall clock time and date at job start Tue Mar 31 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46900 * 111.00286 * 2 1 4 4 C 1.46898 * 111.00081 * 123.95985 * 2 1 3 5 5 H 1.09004 * 109.46846 * 186.04249 * 4 2 1 6 6 C 1.50700 * 109.47277 * 66.04737 * 4 2 1 7 7 O 1.21290 * 119.99897 * 347.61776 * 6 4 2 8 8 N 1.34775 * 120.00513 * 167.61957 * 6 4 2 9 9 C 1.46497 * 120.00485 * 183.98997 * 8 6 4 10 10 H 1.09005 * 115.51104 * 9.58624 * 9 8 6 11 11 C 1.52998 * 117.44264 * 224.24306 * 9 8 6 12 12 H 1.08996 * 119.54469 * 4.11536 * 11 9 8 13 13 C 1.57697 * 116.10937 * 161.64080 * 11 9 8 14 14 N 1.48141 * 104.67646 * 87.30712 * 13 11 9 15 15 C 1.36938 * 127.84257 * 139.77776 * 14 13 11 16 16 H 1.08007 * 119.99579 * 344.21509 * 15 14 13 17 17 C 1.38803 * 120.00286 * 164.21438 * 15 14 13 18 18 N 1.31613 * 120.00427 * 350.79782 * 17 15 14 19 19 Si 1.86803 * 119.99896 * 170.79898 * 17 15 14 20 20 H 1.48497 * 109.47226 * 60.00215 * 19 17 15 21 21 H 1.48497 * 109.47041 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47231 * 300.00119 * 19 17 15 23 23 C 1.48143 * 104.32404 * 319.77107 * 14 13 11 24 24 C 1.52998 * 117.44379 * 155.00114 * 9 8 6 25 25 H 1.08998 * 119.54161 * 355.88330 * 24 9 8 26 26 C 1.52998 * 109.47035 * 306.04529 * 4 2 1 27 27 C 1.53003 * 117.51741 * 114.30370 * 26 4 2 28 28 C 1.53005 * 60.00115 * 107.47867 * 27 26 4 29 29 H 1.09000 * 109.47269 * 296.03833 * 1 2 3 30 30 H 1.09001 * 109.47576 * 56.04573 * 1 2 3 31 31 H 1.09007 * 109.47425 * 176.04188 * 1 2 3 32 32 H 1.08996 * 109.47005 * 183.94969 * 3 2 1 33 33 H 1.08992 * 109.47302 * 303.95880 * 3 2 1 34 34 H 1.09001 * 109.46366 * 63.95857 * 3 2 1 35 35 H 0.97006 * 119.99423 * 3.99582 * 8 6 4 36 36 H 1.09002 * 110.92084 * 328.22304 * 13 11 9 37 37 H 1.09002 * 109.83488 * 205.83814 * 13 11 9 38 38 H 0.96998 * 120.00449 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.41377 * 280.80383 * 23 14 13 40 40 H 1.08996 * 110.51032 * 158.41746 * 23 14 13 41 41 H 1.08993 * 115.54976 * 328.60014 * 26 4 2 42 42 H 1.09000 * 117.49528 * 214.97187 * 27 26 4 43 43 H 1.08996 * 117.49898 * 359.97438 * 27 26 4 44 44 H 1.08999 * 117.49698 * 252.50936 * 28 27 26 45 45 H 1.08994 * 117.51645 * 107.47903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 3.0797 -0.6612 1.1754 6 6 1.6369 -2.2205 0.9726 7 8 0.8242 -2.5538 0.1362 8 7 2.2193 -3.1510 1.7545 9 6 1.9372 -4.5719 1.5364 10 1 1.3808 -4.8062 0.6288 11 6 1.6669 -5.4347 2.7707 12 1 1.6240 -4.9672 3.7544 13 6 0.9406 -6.8101 2.5106 14 7 2.0357 -7.7627 2.2143 15 6 2.1531 -9.0628 2.6279 16 1 1.5405 -9.4290 3.4386 17 6 3.0593 -9.9101 2.0053 18 7 3.6733 -9.5246 0.9069 19 14 3.4074 -11.5978 2.7265 20 1 2.1500 -12.3866 2.7696 21 1 4.4049 -12.3013 1.8808 22 1 3.9444 -11.4468 4.1028 23 6 2.9751 -6.9898 1.3688 24 6 2.9933 -5.5791 1.9959 25 1 3.9384 -5.2191 2.4024 26 6 1.3857 -0.2346 2.4362 27 6 0.4615 -1.1703 3.2181 28 6 1.8628 -0.8603 3.7484 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0253 -0.0709 32 1 3.0827 1.3431 -0.0708 33 1 1.5898 1.9163 -0.8523 34 1 1.7044 1.8722 0.9234 35 1 2.8252 -2.8798 2.4619 36 1 0.2606 -6.7367 1.6619 37 1 0.4006 -7.1183 3.4058 38 1 4.3063 -10.1168 0.4717 39 1 2.6129 -6.9445 0.3417 40 1 3.9705 -7.4327 1.4007 41 1 1.1478 0.8291 2.4430 42 1 -0.3844 -0.7221 3.7392 43 1 0.2873 -2.1646 2.8070 44 1 2.6106 -1.6508 3.6864 45 1 1.9391 -0.2081 4.6184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114409563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:33 Heat of formation + Delta-G solvation = 55.507000 kcal Electronic energy + Delta-G solvation = -24219.021624 eV Core-core repulsion = 20853.253900 eV Total energy + Delta-G solvation = -3365.767724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77825 -40.18545 -38.35091 -36.88486 -35.88657 -34.20995 -32.16128 -29.52926 -28.79188 -28.40335 -27.50221 -24.15055 -23.78704 -23.43431 -22.46706 -21.88833 -20.91893 -20.56267 -18.84784 -17.95576 -17.84745 -17.16952 -16.82217 -16.54553 -15.84412 -15.62088 -15.40871 -15.08803 -14.90587 -14.64225 -14.28799 -13.95218 -13.67933 -13.36259 -13.30295 -13.23654 -12.91352 -12.79241 -12.73360 -12.68016 -12.43816 -12.33648 -12.15010 -11.99046 -11.86653 -11.66051 -11.44795 -11.19394 -10.87665 -10.72498 -10.56131 -9.68974 -9.23374 -8.93124 -7.92155 -5.29458 1.46928 1.50123 1.52924 1.57102 1.84967 2.48328 2.75463 2.86118 3.07424 3.28134 3.53408 3.60884 3.66694 3.83173 3.90265 3.93746 4.00558 4.07784 4.25276 4.30249 4.35768 4.43702 4.51130 4.53566 4.73404 4.75385 4.79338 4.81379 4.87222 4.94455 4.97040 5.05151 5.14107 5.18559 5.20845 5.27897 5.41689 5.45809 5.56251 5.63781 5.92033 6.11652 6.15727 6.53309 6.99406 7.24316 7.66486 8.45235 9.21633 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.003162 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.138656 B = 8852.207365 C = 9131.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.544 5.544 3 C 0.023 3.977 4 C 0.102 3.898 5 H 0.127 0.873 6 C 0.524 3.476 7 O -0.562 6.562 8 N -0.685 5.685 9 C 0.117 3.883 10 H 0.101 0.899 11 C -0.163 4.163 12 H 0.140 0.860 13 C 0.149 3.851 14 N -0.616 5.616 15 C -0.245 4.245 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.190 3.810 24 C -0.180 4.180 25 H 0.125 0.875 26 C -0.179 4.179 27 C -0.192 4.192 28 C -0.154 4.154 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.412 0.588 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.250 0.750 39 H -0.007 1.007 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 24.517 6.034 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.267 5.267 3 C -0.124 4.124 4 C -0.010 4.010 5 H 0.144 0.856 6 C 0.312 3.688 7 O -0.439 6.439 8 N -0.338 5.338 9 C 0.009 3.991 10 H 0.119 0.881 11 C -0.184 4.184 12 H 0.158 0.842 13 C 0.023 3.977 14 N -0.340 5.340 15 C -0.373 4.373 16 H 0.101 0.899 17 C -0.255 4.255 18 N -0.595 5.595 19 Si 0.810 3.190 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.064 3.936 24 C -0.201 4.201 25 H 0.143 0.857 26 C -0.199 4.199 27 C -0.230 4.230 28 C -0.192 4.192 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.251 0.749 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.011 0.989 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.132 23.835 4.918 24.431 hybrid contribution 0.140 -0.818 0.801 1.153 sum -1.992 23.018 5.718 23.801 Atomic orbital electron populations 1.22550 0.86737 1.03202 1.00548 1.61882 1.09292 1.15181 1.40323 1.22514 1.01312 0.86932 1.01668 1.21304 1.01820 0.88584 0.89303 0.85563 1.20945 0.79867 0.88430 0.79550 1.90635 1.34498 1.82470 1.36342 1.45427 1.48332 1.03907 1.36093 1.21365 1.00979 0.78936 0.97787 0.88074 1.24973 0.99128 0.97154 0.97130 0.84245 1.21819 0.90099 0.87804 0.97974 1.45397 1.20463 1.08929 1.59191 1.19368 1.20147 0.85563 1.12240 0.89939 1.25777 1.00833 1.02062 0.96856 1.70093 1.31811 1.37894 1.19707 0.85099 0.77534 0.78827 0.77514 1.20149 1.21998 1.19990 1.20772 0.95187 0.86911 0.90701 1.24308 0.94541 0.96155 1.05084 0.85676 1.22808 1.05604 0.99830 0.91669 1.23148 0.95404 1.00004 1.04404 1.23116 0.96506 1.03043 0.96523 0.94500 0.91187 0.91507 0.90305 0.90549 0.93879 0.74889 0.96308 0.92020 0.94052 0.98861 0.92316 0.85410 0.87787 0.90435 0.88319 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.86 127.69 1.13 1.51 16 2 N -0.54 -11.19 4.80 -927.76 -4.45 -15.64 16 3 C 0.02 0.30 9.39 127.69 1.20 1.50 16 4 C 0.10 1.93 2.50 44.17 0.11 2.04 16 5 H 0.13 1.89 8.06 -2.38 -0.02 1.87 16 6 C 0.52 14.14 5.05 87.66 0.44 14.58 16 7 O -0.56 -20.37 13.44 -3.06 -0.04 -20.41 16 8 N -0.69 -16.98 4.60 -442.53 -2.04 -19.01 16 9 C 0.12 3.85 5.91 44.99 0.27 4.12 16 10 H 0.10 4.06 7.43 -2.38 -0.02 4.04 16 11 C -0.16 -5.48 7.34 -8.69 -0.06 -5.54 16 12 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 13 C 0.15 6.34 7.10 87.73 0.62 6.96 16 14 N -0.62 -32.35 3.38 -681.42 -2.30 -34.65 16 15 C -0.24 -13.84 10.35 84.03 0.87 -12.97 16 16 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 17 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 18 N -0.95 -57.54 10.88 21.65 0.24 -57.30 16 19 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.19 9.54 5.69 86.54 0.49 10.03 16 24 C -0.18 -6.63 6.98 -9.89 -0.07 -6.70 16 25 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 26 C -0.18 -2.54 4.03 -10.79 -0.04 -2.59 16 27 C -0.19 -3.23 9.58 30.60 0.29 -2.94 16 28 C -0.15 -1.80 9.84 30.60 0.30 -1.50 16 29 H 0.04 0.68 6.74 -2.39 -0.02 0.66 16 30 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 31 H 0.07 1.93 5.47 -2.38 -0.01 1.92 16 32 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.04 0.44 6.56 -2.39 -0.02 0.42 16 35 H 0.41 7.50 6.42 -92.70 -0.59 6.91 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 39 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.06 3.29 6.54 -2.39 -0.02 3.27 16 41 H 0.13 1.51 6.36 -2.39 -0.02 1.49 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.78 6.07 -2.39 -0.01 1.76 16 44 H 0.10 1.07 5.86 -2.39 -0.01 1.05 16 45 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -71.83 349.01 -0.16 -71.99 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.40 Total: 22.01 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.01 Total: 5.46 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -8.56 Total: -126.60 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.04 Total: -20.41 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.83 -0.16 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114409563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.497 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds