Wall clock time and date at job start Tue Mar 31 2020 03:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 O 1.41593 * 120.00091 * 180.02562 * 17 15 14 19 19 C 1.42907 * 113.99906 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.46971 * 179.97438 * 19 18 17 21 21 N 1.34772 * 119.99956 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00049 * 359.97438 * 20 19 18 23 23 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 24 24 C 1.38101 * 120.07425 * 359.95492 * 23 13 12 25 25 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 28 28 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 29 29 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 30 30 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 31 31 H 1.08998 * 109.46903 * 299.99843 * 19 18 17 32 32 H 1.09001 * 109.47078 * 59.99835 * 19 18 17 33 33 H 0.97008 * 120.00032 * 0.02562 * 21 20 19 34 34 H 0.97000 * 120.00743 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.96503 * 179.97438 * 23 13 12 36 36 H 1.07992 * 120.03608 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 8 5.6170 -9.2972 2.3598 19 6 6.3892 -10.4997 2.3593 20 6 6.5931 -10.9663 3.7777 21 7 7.2969 -12.0891 4.0230 22 8 6.1239 -10.3313 4.6983 23 6 4.2024 -4.5970 -0.2043 24 6 3.4573 -3.4394 -0.0951 25 1 -0.4850 0.8400 0.0004 26 1 0.3579 -4.7892 -0.2301 27 1 1.6954 -6.8451 -0.4339 28 1 3.8358 -7.8149 -1.0361 29 1 5.3320 -6.8560 -0.9360 30 1 5.7124 -9.2282 0.2848 31 1 5.8624 -11.2694 1.7953 32 1 7.3577 -10.3093 1.8969 33 1 7.6725 -12.5968 3.2867 34 1 7.4285 -12.3894 4.9359 35 1 5.2812 -4.5470 -0.1945 36 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116467947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:57 Heat of formation + Delta-G solvation = -63.514645 kcal Electronic energy + Delta-G solvation = -21925.846511 eV Core-core repulsion = 18185.532771 eV Total energy + Delta-G solvation = -3740.313741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06798 -39.56857 -38.71821 -37.21278 -36.30509 -34.24360 -32.78914 -32.29617 -31.02579 -30.10354 -28.21759 -26.40583 -25.02717 -21.93540 -21.69593 -21.30950 -20.12614 -18.69456 -17.96323 -17.93243 -17.13093 -16.86707 -16.60479 -16.48316 -15.28010 -14.77209 -14.61334 -14.50336 -14.36371 -13.98175 -13.90232 -13.48432 -13.39946 -13.05028 -12.66667 -12.53197 -11.92111 -11.58426 -11.39491 -11.23296 -10.83844 -10.74596 -10.58576 -10.52515 -10.38697 -10.25798 -9.78377 -9.28256 -9.06005 -8.78159 -8.10042 -7.13271 -6.40420 -3.98658 1.42389 2.07376 2.30674 2.37831 2.75717 3.06511 3.17121 3.17440 3.22530 4.01203 4.15235 4.35563 4.43791 4.51505 4.55866 4.87847 5.14145 5.21982 5.25386 5.34970 5.60203 5.76606 5.88759 6.19841 6.26727 6.46316 6.52757 6.71894 6.74989 6.95551 7.08988 7.21151 7.29087 7.40411 7.49814 7.70905 7.88271 8.04987 8.33104 9.05207 9.75825 10.77635 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.032001 B = 0.002437 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.771268 B =11488.565553 C =11786.590296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.192 4.192 12 C -0.056 4.056 13 C -0.177 4.177 14 C -0.061 4.061 15 C 0.516 3.484 16 O -0.492 6.492 17 N -0.609 5.609 18 O -0.122 6.122 19 C 0.011 3.989 20 C 0.523 3.477 21 N -0.851 5.851 22 O -0.511 6.511 23 C -0.053 4.053 24 C -0.233 4.233 25 H 0.270 0.730 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.403 0.597 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.409 0.591 35 H 0.105 0.895 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.136 -24.043 -2.725 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.105 3.895 11 C -0.211 4.211 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.101 4.101 15 C 0.303 3.697 16 O -0.362 6.362 17 N -0.315 5.315 18 O -0.124 6.124 19 C -0.070 4.070 20 C 0.305 3.695 21 N -0.418 5.418 22 O -0.384 6.384 23 C -0.071 4.071 24 C -0.252 4.252 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.243 0.757 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.231 0.769 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.884 -22.692 -1.297 27.169 hybrid contribution 1.219 -0.221 -0.331 1.283 sum 16.103 -22.914 -1.628 28.053 Atomic orbital electron populations 1.70041 1.05954 1.27636 1.46108 1.25299 0.95854 0.98848 0.96597 0.85703 0.78961 0.80074 0.78640 1.19903 1.20282 1.19184 1.21341 0.91832 0.80825 1.52686 0.89024 1.83976 1.34396 1.11490 1.78128 1.19409 0.90309 0.88033 0.91763 1.20155 0.99546 0.90307 1.11128 1.20411 0.92684 0.96710 0.97636 1.18554 0.93200 0.92220 1.13908 1.20320 1.01714 0.96889 0.91197 1.21516 0.77066 0.77985 0.93114 1.90812 1.48049 1.57327 1.40012 1.48030 1.58899 1.27057 0.97512 1.90800 1.73971 1.39419 1.08242 1.22613 0.98212 0.89957 0.96215 1.19900 0.78376 0.80994 0.90253 1.43633 1.57701 1.27529 1.12945 1.90882 1.47241 1.54454 1.45828 1.20519 0.98134 0.91789 0.96677 1.21105 0.93791 0.98863 1.11490 0.92045 0.86450 0.87213 0.88369 0.88409 0.75744 0.89002 0.89013 0.76916 0.75889 0.87660 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.21 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.21 9.76 0.05 0.00 -5.20 16 10 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 11 C -0.19 -4.25 9.99 -39.39 -0.39 -4.65 16 12 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 13 C -0.18 -3.08 4.38 -104.58 -0.46 -3.54 16 14 C -0.06 -0.72 5.83 -29.04 -0.17 -0.89 16 15 C 0.52 7.57 7.97 -10.98 -0.09 7.48 16 16 O -0.49 -10.44 16.44 -12.64 -0.21 -10.65 16 17 N -0.61 -6.47 6.39 31.22 0.20 -6.27 16 18 O -0.12 -1.61 10.64 -40.35 -0.43 -2.04 16 19 C 0.01 0.08 6.71 36.01 0.24 0.32 16 20 C 0.52 4.61 8.18 -10.99 -0.09 4.52 16 21 N -0.85 -2.99 8.87 31.22 0.28 -2.71 16 22 O -0.51 -7.83 17.34 -14.35 -0.25 -8.07 16 23 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 24 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.40 2.08 8.54 -40.82 -0.35 1.73 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 -0.14 8.83 -40.82 -0.36 -0.50 16 34 H 0.41 1.24 8.93 -40.82 -0.36 0.87 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -42.28 329.29 -5.59 -47.87 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.73 Total: 2.59 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.15 Total: -11.41 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.24 Total: -34.02 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.89 Total: -25.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -42.28 -5.59 -47.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116467947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.642 kcal (2) G-P(sol) polarization free energy of solvation -42.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds