Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86807 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47146 * 240.00390 * 3 2 1 5 5 H 1.48500 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99981 * 3 2 1 7 7 C 1.38953 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99965 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99730 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99880 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47085 * 180.02562 * 12 10 9 14 14 C 1.34223 * 117.00131 * 180.02562 * 13 12 10 15 15 O 1.20826 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00009 * 179.97438 * 14 13 12 17 17 O 1.42902 * 109.47205 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38650 * 120.78792 * 269.71759 * 19 18 17 21 21 C 1.38207 * 119.16129 * 179.79528 * 20 19 18 22 22 N 1.31868 * 120.76474 * 0.49389 * 21 20 19 23 23 C 1.31874 * 121.72157 * 359.73831 * 22 21 20 24 24 C 1.38199 * 120.77057 * 0.02562 * 23 22 21 25 25 H 0.97002 * 120.00660 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00045 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46807 * 60.00163 * 12 10 9 28 28 H 1.08993 * 109.47705 * 300.00622 * 12 10 9 29 29 H 1.09001 * 109.47017 * 60.00101 * 16 14 13 30 30 H 1.08999 * 109.47472 * 299.99778 * 16 14 13 31 31 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 32 32 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 33 33 H 1.07998 * 120.42060 * 0.02562 * 20 19 18 34 34 H 1.07997 * 119.61581 * 180.20726 * 21 20 19 35 35 H 1.07998 * 119.61429 * 180.02562 * 23 22 21 36 36 H 1.07991 * 120.42226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0022 12 6 1.2439 -4.8629 -0.0032 13 8 2.1875 -5.9666 -0.0037 14 6 1.6745 -7.2069 -0.0048 15 8 0.4766 -7.3653 -0.0049 16 6 2.5925 -8.4020 -0.0060 17 8 1.8143 -9.6005 -0.0064 18 6 2.5926 -10.7989 -0.0081 19 6 1.6746 -11.9941 -0.0090 20 6 1.2474 -12.5618 1.1816 21 6 0.4023 -13.6547 1.1415 22 7 0.0107 -14.1626 -0.0107 23 6 0.4007 -13.6516 -1.1621 24 6 1.2418 -12.5557 -1.2006 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 0.6169 -4.9201 -0.8931 28 1 0.6175 -4.9213 0.8868 29 1 3.2214 -8.3779 0.8840 30 1 3.2213 -8.3764 -0.8960 31 1 3.2207 -10.8230 -0.8986 32 1 3.2221 -10.8246 0.8814 33 1 1.5681 -12.1530 2.1284 34 1 0.0624 -14.1006 2.0645 35 1 0.0587 -14.0946 -2.0858 36 1 1.5580 -12.1420 -2.1467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117300405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = -123.841206 kcal Electronic energy + Delta-G solvation = -21604.630565 eV Core-core repulsion = 17861.700868 eV Total energy + Delta-G solvation = -3742.929697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59679 -40.33295 -38.44208 -37.89234 -36.06569 -34.03063 -33.62262 -31.57665 -31.41820 -29.72633 -28.00020 -26.56231 -24.55783 -23.84145 -22.41703 -21.18415 -19.61572 -18.13242 -17.98616 -17.20191 -17.14945 -16.89171 -16.58970 -16.09380 -15.96058 -15.51353 -15.49813 -14.60909 -14.17024 -14.14676 -14.05520 -13.92398 -13.68641 -12.86774 -12.85871 -12.27558 -12.22572 -11.91890 -11.89968 -11.64161 -11.13253 -10.50864 -10.46907 -10.43997 -10.30778 -10.19980 -10.10813 -9.85661 -9.62175 -9.50707 -8.56041 -8.11097 -6.52081 -3.94434 0.72710 0.78061 2.22498 2.25173 3.13690 3.21343 3.24953 3.36048 3.70632 3.73677 4.08465 4.11728 4.28676 4.33573 4.54879 4.65372 4.73945 4.81964 4.85006 4.93275 4.96075 5.03608 5.12764 5.24323 5.41350 5.49834 5.56409 5.66126 5.90604 6.01578 6.31139 6.50976 6.55977 7.45308 7.60053 7.79923 7.92841 8.45639 9.04356 9.36429 9.86108 10.64940 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.053410 B = 0.002058 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.122207 B =13604.277568 C =13824.419888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.325 6.325 14 C 0.458 3.542 15 O -0.493 6.493 16 C 0.073 3.927 17 O -0.361 6.361 18 C 0.101 3.899 19 C -0.046 4.046 20 C -0.150 4.150 21 C 0.096 3.904 22 N -0.482 5.482 23 C 0.096 3.904 24 C -0.150 4.150 25 H 0.275 0.725 26 H 0.395 0.605 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -23.597 -0.023 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.240 6.240 14 C 0.299 3.701 15 O -0.380 6.380 16 C -0.004 4.004 17 O -0.280 6.280 18 C 0.025 3.975 19 C -0.054 4.054 20 C -0.170 4.170 21 C -0.061 4.061 22 N -0.192 5.192 23 C -0.061 4.061 24 C -0.170 4.170 25 H 0.085 0.915 26 H 0.229 0.771 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.408 -24.151 -0.023 24.271 hybrid contribution 0.370 1.661 0.000 1.702 sum 2.778 -22.490 -0.023 22.661 Atomic orbital electron populations 1.69601 1.06009 1.28656 1.49402 1.25326 0.95699 0.99908 0.96820 0.85844 0.78742 0.80019 0.79193 1.19740 1.20857 1.19744 1.19679 0.93460 0.81737 1.48419 0.87633 1.41699 1.09403 1.04066 1.63668 1.19291 0.88318 0.84035 0.86120 1.90558 1.13397 1.86782 1.55408 1.22780 0.90754 0.84225 1.03697 1.86492 1.40466 1.13792 1.83213 1.23081 0.88467 0.84822 0.73759 1.90695 1.16602 1.86595 1.44103 1.21657 0.91879 0.82184 1.04705 1.88027 1.32356 1.11922 1.95674 1.21386 0.91925 0.82045 1.02172 1.19952 0.96890 0.94923 0.93620 1.22120 0.98618 0.97413 0.98816 1.22797 0.93811 0.93112 0.96382 1.67677 1.22317 1.30527 0.98665 1.22796 0.93847 0.93068 0.96397 1.22117 0.98606 0.97416 0.98816 0.91524 0.77110 0.89387 0.89391 0.88434 0.88426 0.91243 0.91237 0.84445 0.82473 0.82475 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 10.44 7.86 -10.98 -0.09 10.35 16 11 O -0.58 -15.82 16.08 -14.11 -0.23 -16.05 16 12 C 0.06 1.19 5.94 36.01 0.21 1.40 16 13 O -0.32 -5.86 9.75 -45.88 -0.45 -6.30 16 14 C 0.46 7.12 8.03 36.00 0.29 7.41 16 15 O -0.49 -9.09 16.25 -25.48 -0.41 -9.51 16 16 C 0.07 0.77 6.53 36.00 0.24 1.01 16 17 O -0.36 -4.14 9.86 -55.18 -0.54 -4.69 16 18 C 0.10 0.76 6.11 36.01 0.22 0.98 16 19 C -0.05 -0.39 5.55 -104.32 -0.58 -0.97 16 20 C -0.15 -1.21 9.82 -39.44 -0.39 -1.59 16 21 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 22 N -0.48 -4.84 10.36 -13.25 -0.14 -4.98 16 23 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 24 C -0.15 -1.21 9.82 -39.44 -0.39 -1.60 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 27 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -35.26 333.07 -6.28 -41.54 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.06 Total: 6.22 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.11 Total: 10.32 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.53 Total: -42.06 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.63 Total: -36.55 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.26 -6.28 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117300405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.300 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds