Wall clock time and date at job start Tue Mar 31 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86807 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47146 * 240.00390 * 3 2 1 5 5 H 1.48500 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99981 * 3 2 1 7 7 C 1.38953 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99965 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99730 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99880 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47085 * 180.02562 * 12 10 9 14 14 C 1.34223 * 117.00131 * 180.02562 * 13 12 10 15 15 O 1.20826 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00009 * 179.97438 * 14 13 12 17 17 O 1.42902 * 109.47205 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38650 * 120.78792 * 269.71759 * 19 18 17 21 21 C 1.38207 * 119.16129 * 179.79528 * 20 19 18 22 22 N 1.31868 * 120.76474 * 0.49389 * 21 20 19 23 23 C 1.31874 * 121.72157 * 359.73831 * 22 21 20 24 24 C 1.38199 * 120.77057 * 0.02562 * 23 22 21 25 25 H 0.97002 * 120.00660 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00045 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46807 * 60.00163 * 12 10 9 28 28 H 1.08993 * 109.47705 * 300.00622 * 12 10 9 29 29 H 1.09001 * 109.47017 * 60.00101 * 16 14 13 30 30 H 1.08999 * 109.47472 * 299.99778 * 16 14 13 31 31 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 32 32 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 33 33 H 1.07998 * 120.42060 * 0.02562 * 20 19 18 34 34 H 1.07997 * 119.61581 * 180.20726 * 21 20 19 35 35 H 1.07998 * 119.61429 * 180.02562 * 23 22 21 36 36 H 1.07991 * 120.42226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0022 12 6 1.2439 -4.8629 -0.0032 13 8 2.1875 -5.9666 -0.0037 14 6 1.6745 -7.2069 -0.0048 15 8 0.4766 -7.3653 -0.0049 16 6 2.5925 -8.4020 -0.0060 17 8 1.8143 -9.6005 -0.0064 18 6 2.5926 -10.7989 -0.0081 19 6 1.6746 -11.9941 -0.0090 20 6 1.2474 -12.5618 1.1816 21 6 0.4023 -13.6547 1.1415 22 7 0.0107 -14.1626 -0.0107 23 6 0.4007 -13.6516 -1.1621 24 6 1.2418 -12.5557 -1.2006 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 0.6169 -4.9201 -0.8931 28 1 0.6175 -4.9213 0.8868 29 1 3.2214 -8.3779 0.8840 30 1 3.2213 -8.3764 -0.8960 31 1 3.2207 -10.8230 -0.8986 32 1 3.2221 -10.8246 0.8814 33 1 1.5681 -12.1530 2.1284 34 1 0.0624 -14.1006 2.0645 35 1 0.0587 -14.0946 -2.0858 36 1 1.5580 -12.1420 -2.1467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117300405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:21 Heat of formation + Delta-G solvation = -147.799961 kcal Electronic energy + Delta-G solvation = -21605.669495 eV Core-core repulsion = 17861.700868 eV Total energy + Delta-G solvation = -3743.968626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.71384 -41.10871 -40.08805 -38.92133 -37.43824 -36.04114 -34.25511 -33.42991 -32.14882 -30.91554 -29.24485 -27.36938 -26.40979 -24.42392 -23.00225 -22.41729 -21.44484 -20.08678 -19.10126 -18.24820 -18.13466 -17.79264 -17.49122 -17.26333 -17.06749 -16.55648 -16.46864 -16.35913 -15.78401 -15.53584 -14.92409 -14.74534 -14.57091 -14.25823 -14.05543 -13.58173 -13.51629 -13.27589 -12.93060 -12.82848 -12.49128 -12.47148 -12.12983 -11.91094 -11.63324 -11.57533 -10.85002 -10.76686 -10.52883 -10.47183 -10.13004 -10.09075 -8.52701 -6.03684 0.10155 0.19747 1.03586 1.12947 1.37668 1.43772 1.55112 1.86041 2.27398 2.62417 2.97005 3.12730 3.15268 3.57602 3.59829 3.77410 3.78869 4.01820 4.11286 4.12735 4.18522 4.19479 4.20364 4.21646 4.44020 4.44878 4.70622 4.88907 4.98314 5.24487 5.33530 5.36387 5.75177 5.85662 5.88844 6.44535 6.61827 6.99988 7.01788 7.38681 7.91599 8.63959 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.053410 B = 0.002058 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.122207 B =13604.277568 C =13824.419888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.339 6.339 14 C 0.457 3.543 15 O -0.527 6.527 16 C 0.080 3.920 17 O -0.391 6.391 18 C 0.098 3.902 19 C -0.062 4.062 20 C -0.156 4.156 21 C 0.082 3.918 22 N -0.512 5.512 23 C 0.082 3.918 24 C -0.156 4.156 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -23.863 -0.023 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.254 6.254 14 C 0.300 3.700 15 O -0.416 6.416 16 C 0.003 3.997 17 O -0.311 6.311 18 C 0.023 3.977 19 C -0.070 4.070 20 C -0.175 4.175 21 C -0.074 4.074 22 N -0.222 5.222 23 C -0.074 4.074 24 C -0.175 4.175 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.099 -24.442 -0.022 24.638 hybrid contribution 0.129 1.646 0.000 1.651 sum 3.228 -22.796 -0.023 23.024 Atomic orbital electron populations 1.69665 1.06999 1.29830 1.49037 1.26158 0.96598 1.02692 0.95630 0.84893 0.77708 0.75998 0.79179 1.19415 1.19508 1.19422 1.19703 0.93004 0.83315 1.50759 0.89579 1.41750 1.09583 1.04225 1.63939 1.20057 0.88073 0.85302 0.84211 1.90522 1.15325 1.87678 1.56816 1.22515 0.90153 0.82411 1.05363 1.86497 1.40621 1.14635 1.83658 1.24146 0.88922 0.84837 0.72080 1.90679 1.18336 1.86717 1.45831 1.21837 0.90503 0.79827 1.07488 1.87974 1.34116 1.12989 1.96049 1.21613 0.91624 0.80026 1.04408 1.20267 0.97338 0.95510 0.93926 1.22385 0.98301 0.97219 0.99643 1.23190 0.93976 0.93481 0.96778 1.67688 1.23356 1.31575 0.99560 1.23189 0.94011 0.93433 0.96795 1.22381 0.98294 0.97231 0.99642 0.90952 0.76584 0.87646 0.87655 0.85444 0.85434 0.89011 0.89001 0.82699 0.80633 0.80637 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.39 13.05 21.66 0.28 -48.11 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.81 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.34 5.29 -306.97 -1.62 -29.96 16 10 C 0.44 20.99 7.86 87.66 0.69 21.68 16 11 O -0.62 -34.28 16.08 15.73 0.25 -34.03 16 12 C 0.07 2.70 5.94 71.24 0.42 3.12 16 13 O -0.34 -11.82 9.75 -44.99 -0.44 -12.26 16 14 C 0.46 13.48 8.03 71.24 0.57 14.05 16 15 O -0.53 -18.93 16.25 28.40 0.46 -18.47 16 16 C 0.08 1.45 6.53 71.24 0.47 1.92 16 17 O -0.39 -8.04 9.86 -129.90 -1.28 -9.32 16 18 C 0.10 1.20 6.11 71.24 0.44 1.64 16 19 C -0.06 -0.96 5.55 -19.67 -0.11 -1.07 16 20 C -0.16 -2.31 9.82 22.36 0.22 -2.09 16 21 C 0.08 1.33 11.18 84.68 0.95 2.28 16 22 N -0.51 -10.09 10.36 -195.85 -2.03 -12.12 16 23 C 0.08 1.33 11.18 84.68 0.95 2.28 16 24 C -0.16 -2.31 9.82 22.36 0.22 -2.09 16 25 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 26 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 27 H 0.11 3.54 8.13 -2.38 -0.02 3.52 16 28 H 0.11 3.54 8.13 -2.39 -0.02 3.52 16 29 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 0.69 8.10 -2.39 -0.02 0.68 16 32 H 0.09 0.69 8.10 -2.39 -0.02 0.68 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -76.66 333.07 4.13 -72.53 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.39 Total: 24.49 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 6.09 Total: 23.67 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -3.37 Total: -90.19 kcal Atomic # 8 Polarization: -73.07 SS G_CDS: -1.01 Total: -74.08 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -76.66 4.13 -72.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117300405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.267 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds