Wall clock time and date at job start Tue Mar 31 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32506 * 126.05503 * 2 1 4 4 C 1.33094 * 109.78075 * 179.97438 * 3 2 1 5 5 S 1.76381 * 141.31388 * 179.97438 * 4 3 2 6 6 C 1.75798 * 90.62715 * 180.02562 * 5 4 3 7 7 C 1.31078 * 109.60262 * 359.97438 * 6 5 4 8 8 N 1.34200 * 109.46606 * 359.97438 * 4 3 2 9 9 C 1.37909 * 126.05629 * 179.97438 * 2 1 3 10 10 C 1.41692 * 126.82968 * 0.05792 * 9 2 1 11 11 O 1.21788 * 120.00149 * 359.95451 * 10 9 2 12 12 N 1.34783 * 120.00007 * 179.97438 * 10 9 2 13 13 C 1.46494 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47197 * 179.97438 * 13 12 10 15 15 N 1.46504 * 109.47208 * 180.02562 * 14 13 12 16 16 C 1.36929 * 120.00010 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00387 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00117 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00250 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47067 * 89.99695 * 20 18 16 22 22 H 1.48501 * 109.46947 * 209.99721 * 20 18 16 23 23 H 1.48502 * 109.46824 * 329.99610 * 20 18 16 24 24 H 1.09004 * 109.46826 * 90.02978 * 1 2 3 25 25 H 1.08999 * 109.46861 * 210.02640 * 1 2 3 26 26 H 1.09002 * 109.47160 * 330.02785 * 1 2 3 27 27 H 1.08004 * 125.19503 * 179.97438 * 6 5 4 28 28 H 1.08006 * 121.85940 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99674 * 359.97438 * 12 10 9 30 30 H 1.09005 * 109.46767 * 299.99761 * 13 12 10 31 31 H 1.09001 * 109.47645 * 59.99740 * 13 12 10 32 32 H 1.09000 * 109.46675 * 299.99428 * 14 13 12 33 33 H 1.08997 * 109.47258 * 59.99839 * 14 13 12 34 34 H 0.96996 * 119.99558 * 359.97438 * 15 14 13 35 35 H 0.96993 * 120.00112 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2870 1.0712 0.0000 4 6 3.5646 0.6983 0.0006 5 16 5.1952 1.3707 0.0005 6 6 5.8831 -0.2470 0.0010 7 6 4.9189 -1.1350 0.0017 8 7 3.6393 -0.6417 0.0015 9 6 2.3188 -1.1149 0.0005 10 6 1.9018 -2.4691 0.0000 11 8 0.7146 -2.7407 -0.0002 12 7 2.8191 -3.4567 0.0000 13 6 2.3880 -4.8568 -0.0011 14 6 3.6166 -5.7686 -0.0014 15 7 3.1856 -7.1688 -0.0031 16 6 4.1175 -8.1721 -0.0032 17 1 5.1702 -7.9313 -0.0023 18 6 3.7091 -9.4988 -0.0053 19 7 2.4260 -9.7924 -0.0069 20 14 4.9804 -10.8675 -0.0061 21 1 5.3160 -11.2320 1.3937 22 1 4.4294 -12.0544 -0.7082 23 1 6.2062 -10.4040 -0.7045 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 6.9390 -0.4745 0.0007 28 1 5.1210 -2.1959 0.0025 29 1 3.7646 -3.2403 0.0001 30 1 1.7894 -5.0533 0.8884 31 1 1.7906 -5.0524 -0.8916 32 1 4.2148 -5.5720 -0.8911 33 1 4.2144 -5.5732 0.8889 34 1 2.2400 -7.3851 -0.0035 35 1 2.1406 -10.7194 -0.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130236574.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:54 Heat of formation + Delta-G solvation = 54.305033 kcal Electronic energy + Delta-G solvation = -20420.969602 eV Core-core repulsion = 17160.810528 eV Total energy + Delta-G solvation = -3260.159074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.02110 -40.67274 -38.16676 -37.28087 -35.58099 -33.36265 -32.38368 -32.21955 -29.72248 -28.15805 -25.86376 -25.50659 -23.77659 -22.90593 -21.69088 -21.47212 -19.62082 -19.25475 -18.04117 -17.68219 -17.12964 -16.71428 -16.57661 -16.42944 -15.92051 -15.44983 -15.20563 -15.19211 -14.89901 -14.48073 -14.31936 -13.83909 -13.32710 -13.15529 -13.05719 -12.70016 -12.65792 -12.57842 -12.40888 -12.10130 -11.88472 -11.73798 -11.62991 -11.14027 -11.01238 -10.38764 -9.93023 -9.09104 -8.90826 -7.97887 -5.29867 -0.62621 -0.37879 0.49094 0.71099 1.22470 1.31257 1.48390 1.50783 1.59111 1.93955 2.11415 2.56694 3.12217 3.36513 3.38079 3.60901 3.89777 3.98935 4.10386 4.15984 4.22030 4.43421 4.52049 4.64077 4.72795 4.76869 4.86827 4.96150 5.06376 5.20624 5.34637 5.47105 5.54096 6.18974 6.22351 6.43025 6.94711 7.28964 7.99603 8.22938 9.25734 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.003152 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.666968 B = 8882.061305 C =10088.978985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.144 3.856 3 N -0.494 5.494 4 C 0.135 3.865 5 S 0.263 5.737 6 C -0.179 4.179 7 C 0.003 3.997 8 N -0.381 5.381 9 C -0.133 4.133 10 C 0.596 3.404 11 O -0.560 6.560 12 N -0.714 5.714 13 C 0.128 3.872 14 C 0.150 3.850 15 N -0.746 5.746 16 C -0.250 4.250 17 H 0.085 0.915 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.979 3.021 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.264 1.264 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.250 0.750 28 H 0.202 0.798 29 H 0.403 0.597 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.374 0.626 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 25.353 -0.019 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.003 3.997 3 N -0.219 5.219 4 C -0.229 4.229 5 S 0.513 5.487 6 C -0.315 4.315 7 C -0.125 4.125 8 N -0.059 5.059 9 C -0.248 4.248 10 C 0.386 3.614 11 O -0.440 6.440 12 N -0.368 5.368 13 C 0.004 3.996 14 C 0.023 3.977 15 N -0.390 5.390 16 C -0.381 4.381 17 H 0.102 0.898 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.808 3.192 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.189 1.189 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.266 0.734 28 H 0.218 0.782 29 H 0.241 0.759 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.206 0.794 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.321 27.071 -0.027 28.631 hybrid contribution -0.028 -3.216 0.006 3.216 sum 9.293 23.856 -0.022 25.602 Atomic orbital electron populations 1.20429 0.84251 1.04409 1.04240 1.21803 0.97808 0.85729 0.94320 1.70282 0.97278 1.29795 1.24507 1.27314 1.02137 0.85003 1.08400 1.84890 0.82632 1.03378 1.77794 1.25944 1.05797 0.93717 1.06076 1.20939 0.79488 1.03536 1.08520 1.43780 1.05823 1.07849 1.48464 1.20076 0.81304 0.95194 1.28194 1.15613 0.85802 0.83336 0.76664 1.90839 1.16911 1.83724 1.52523 1.45775 1.09814 1.05825 1.75388 1.21240 0.97420 0.79249 1.01724 1.20836 0.94085 0.83535 0.99278 1.42403 1.06172 1.00601 1.89795 1.19644 0.89888 0.86632 1.41937 0.89751 1.25681 0.98011 0.99903 1.03227 1.69835 1.15183 1.18040 1.58982 0.85060 0.78292 0.78392 0.77490 1.21275 1.22400 1.18888 0.89208 0.89759 0.88895 0.73360 0.78178 0.75904 0.92245 0.92253 0.94397 0.94384 0.79379 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 9.84 71.24 0.70 -1.11 16 2 C 0.14 4.06 7.16 42.38 0.30 4.37 16 3 N -0.49 -13.54 11.25 -183.21 -2.06 -15.60 16 4 C 0.14 3.02 8.89 179.76 1.60 4.61 16 5 S 0.26 2.90 23.38 -56.49 -1.32 1.58 16 6 C -0.18 -1.15 11.13 67.70 0.75 -0.39 16 7 C 0.00 0.04 10.44 83.75 0.87 0.91 16 8 N -0.38 -8.33 3.19 -347.69 -1.11 -9.43 16 9 C -0.13 -3.75 6.94 38.56 0.27 -3.48 16 10 C 0.60 18.95 7.60 85.09 0.65 19.60 16 11 O -0.56 -21.18 14.69 -4.63 -0.07 -21.25 16 12 N -0.71 -20.16 5.55 -472.03 -2.62 -22.78 16 13 C 0.13 4.38 5.79 86.38 0.50 4.88 16 14 C 0.15 5.54 6.37 86.38 0.55 6.09 16 15 N -0.75 -37.24 5.60 -343.45 -1.92 -39.16 16 16 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 20 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.08 2.25 6.44 -2.39 -0.02 2.24 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.25 -0.76 8.06 -2.91 -0.02 -0.78 16 28 H 0.20 1.76 6.07 -2.91 -0.02 1.74 16 29 H 0.40 8.71 5.33 -92.71 -0.49 8.21 16 30 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.37 20.30 7.67 -92.71 -0.71 19.59 16 35 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.04 315.79 0.66 -75.38 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.05 Total: 24.34 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 7.50 Total: 18.99 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -7.43 Total: -145.94 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.07 Total: -21.25 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.32 Total: 1.58 kcal Total: -76.04 0.66 -75.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130236574.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.681 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds