Wall clock time and date at job start Tue Mar 31 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47361 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47461 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47111 * 149.99775 * 3 2 1 7 7 C 1.37877 * 119.99436 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99457 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00255 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47413 * 299.99840 * 9 7 2 11 11 N 1.46500 * 109.46938 * 179.97438 * 9 7 2 12 12 C 1.34773 * 119.99861 * 154.99929 * 11 9 7 13 13 O 1.21285 * 120.00475 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00038 * 179.97438 * 12 11 9 15 15 N 1.46501 * 109.47375 * 180.02562 * 14 12 11 16 16 N 1.28943 * 126.47062 * 269.69117 * 15 14 12 17 17 N 1.28579 * 109.62997 * 180.25796 * 16 15 14 18 18 C 1.33389 * 109.88959 * 0.02562 * 17 16 15 19 19 N 1.39629 * 126.25268 * 179.97438 * 18 17 16 20 20 N 1.31676 * 107.48821 * 359.97438 * 18 17 16 21 21 C 1.53005 * 109.46985 * 59.99941 * 9 7 2 22 22 F 1.39902 * 109.46616 * 179.97438 * 21 9 7 23 23 F 1.39899 * 109.47107 * 299.99823 * 21 9 7 24 24 F 1.39902 * 109.46960 * 59.99913 * 21 9 7 25 25 H 0.96998 * 119.99439 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99860 * 335.00280 * 11 9 7 27 27 H 1.09007 * 109.47155 * 60.00503 * 14 12 11 28 28 H 1.08995 * 109.47691 * 300.00305 * 14 12 11 29 29 H 0.96999 * 119.99637 * 179.97438 * 19 18 17 30 30 H 0.97002 * 120.00159 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 2.2029 -3.6127 0.0005 12 6 1.8367 -4.8123 0.4938 13 8 0.7190 -4.9701 0.9373 14 6 2.8158 -5.9579 0.4933 15 7 2.1815 -7.1427 1.0766 16 7 2.1875 -7.4811 2.3208 17 7 1.5379 -8.5803 2.4726 18 6 1.0768 -9.0014 1.2940 19 7 0.3276 -10.1574 1.0657 20 7 1.4573 -8.1278 0.3852 21 6 0.3718 -2.5804 -1.2491 22 9 -0.3273 -3.7922 -1.2493 23 9 -0.5373 -1.5170 -1.2496 24 9 1.1765 -2.5066 -2.3911 25 1 -0.4849 0.8401 -0.0004 26 1 3.0968 -3.4866 -0.3545 27 1 3.6920 -5.6873 1.0825 28 1 3.1196 -6.1759 -0.5305 29 1 0.0375 -10.3776 0.1666 30 1 0.0967 -10.7398 1.8062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156053146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:32 Heat of formation + Delta-G solvation = -57.413331 kcal Electronic energy + Delta-G solvation = -24178.910634 eV Core-core repulsion = 19825.757133 eV Total energy + Delta-G solvation = -4353.153501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.44145 -48.07609 -47.75256 -44.02580 -40.77304 -36.82091 -36.42982 -34.81019 -34.48849 -32.49190 -31.00359 -29.07338 -26.60668 -24.78370 -23.52034 -23.29053 -21.78748 -19.74817 -19.06615 -18.75405 -18.72335 -18.50702 -17.90198 -17.56082 -17.11933 -16.90650 -16.79095 -16.22668 -15.58408 -15.00050 -14.97893 -14.88409 -14.55481 -14.47320 -14.31070 -14.05467 -13.92637 -13.76958 -13.08947 -13.00191 -12.86473 -12.73159 -12.65503 -12.21751 -11.78273 -11.77516 -11.58946 -10.98955 -10.70155 -10.18858 -9.68770 -8.21921 -6.53051 -0.02714 0.69306 1.40521 1.49213 1.49896 1.50720 1.60920 2.03039 2.24453 2.38882 2.50394 2.93977 3.23410 3.48032 3.76976 3.84659 3.93492 4.03324 4.16812 4.40398 4.64626 4.85026 5.13020 5.29478 5.51429 5.63708 6.09778 6.50979 6.55786 6.57022 7.12333 7.23694 7.41330 8.70792 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.004333 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.279122 B = 6460.599514 C = 6895.394137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.253 3.747 10 H 0.045 0.955 11 N -0.691 5.691 12 C 0.491 3.509 13 O -0.573 6.573 14 C 0.125 3.875 15 N -0.184 5.184 16 N 0.013 4.987 17 N -0.362 5.362 18 C 0.435 3.565 19 N -0.793 5.793 20 N -0.366 5.366 21 C 0.412 3.588 22 F -0.222 7.222 23 F -0.152 7.152 24 F -0.200 7.200 25 H 0.268 0.732 26 H 0.424 0.576 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.428 0.572 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -12.371 -1.425 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.595 4.595 8 H 0.119 0.881 9 C 0.146 3.854 10 H 0.063 0.937 11 N -0.344 5.344 12 C 0.275 3.725 13 O -0.451 6.451 14 C 0.001 3.999 15 N -0.098 5.098 16 N 0.018 4.982 17 N -0.245 5.245 18 C 0.062 3.938 19 N -0.354 5.354 20 N -0.219 5.219 21 C 0.356 3.644 22 F -0.204 7.204 23 F -0.133 7.133 24 F -0.182 7.182 25 H 0.077 0.923 26 H 0.262 0.738 27 H 0.207 0.793 28 H 0.197 0.803 29 H 0.262 0.738 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.353 -11.876 -0.857 13.994 hybrid contribution -0.667 0.406 -0.829 1.139 sum 6.686 -11.469 -1.686 13.382 Atomic orbital electron populations 1.70544 1.07660 1.28161 1.44762 1.26027 0.95828 1.03858 0.93477 0.85146 0.78699 0.77032 0.78398 1.20014 1.21310 1.17610 1.21263 0.94852 0.87896 1.55486 0.88084 1.19344 0.88927 0.87476 0.89679 0.93697 1.45715 1.17682 1.09118 1.61871 1.21280 0.88750 0.84793 0.77669 1.90790 1.23479 1.83384 1.47461 1.22251 0.94359 0.76975 1.06280 1.52615 1.36117 1.18579 1.02535 1.78215 1.11398 1.06433 1.02116 1.75156 1.18341 1.07793 1.23197 1.22015 0.93512 0.91184 0.87140 1.40952 1.58939 1.20667 1.14853 1.78818 1.21713 1.02641 1.18716 1.23348 0.80881 0.72282 0.87867 1.93072 1.81746 1.48515 1.97033 1.93380 1.69053 1.54577 1.96323 1.92995 1.73938 1.96131 1.55104 0.92260 0.73791 0.79259 0.80347 0.73803 0.73567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.73 9.50 21.45 0.20 -47.53 16 2 C 0.01 0.66 5.20 84.65 0.44 1.10 16 3 Si 0.98 38.94 29.54 68.60 2.03 40.97 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.56 -26.38 8.46 25.60 0.22 -26.17 16 8 H 0.10 4.23 7.74 -2.91 -0.02 4.21 16 9 C 0.25 11.95 2.21 44.25 0.10 12.04 16 10 H 0.05 2.51 7.58 -2.39 -0.02 2.49 16 11 N -0.69 -24.15 4.98 -446.09 -2.22 -26.37 16 12 C 0.49 17.05 7.43 87.66 0.65 17.70 16 13 O -0.57 -26.83 15.00 -3.05 -0.05 -26.88 16 14 C 0.13 2.75 7.23 85.63 0.62 3.37 16 15 N -0.18 -5.51 3.83 -190.78 -0.73 -6.24 16 16 N 0.01 0.44 13.24 37.02 0.49 0.93 16 17 N -0.36 -11.54 12.32 -58.93 -0.73 -12.27 16 18 C 0.44 12.36 9.63 260.82 2.51 14.87 16 19 N -0.79 -13.89 9.13 -58.88 -0.54 -14.43 16 20 N -0.37 -11.40 12.79 -58.91 -0.75 -12.15 16 21 C 0.41 20.62 2.81 71.98 0.20 20.82 16 22 F -0.22 -11.26 15.67 44.97 0.70 -10.56 16 23 F -0.15 -8.45 12.91 44.97 0.58 -7.87 16 24 F -0.20 -9.24 16.94 44.97 0.76 -8.48 16 25 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.42 10.92 8.54 -92.71 -0.79 10.13 16 27 H 0.19 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.18 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.43 5.58 8.96 -92.71 -0.83 4.75 16 30 H 0.43 5.32 8.96 -92.71 -0.83 4.49 16 Total: -1.00 -75.79 286.53 3.31 -72.48 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -1.18 Total: 14.66 kcal Atomic # 6 Polarization: 39.00 SS G_CDS: 4.74 Total: 43.74 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.28 Total: -118.06 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 9 Polarization: -28.96 SS G_CDS: 2.05 Total: -26.91 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -75.79 3.31 -72.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.069 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds