Wall clock time and date at job start Tue Mar 31 2020 03:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29517 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47192 * 268.07246 * 3 2 1 5 5 H 1.48505 * 109.47025 * 28.07011 * 3 2 1 6 6 H 1.48505 * 109.47231 * 148.07158 * 3 2 1 7 7 C 1.46520 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00152 * 345.96709 * 7 2 1 9 9 C 1.40357 * 120.00452 * 165.97237 * 7 2 1 10 10 C 1.41339 * 120.24937 * 331.06761 * 9 7 2 11 11 C 1.36485 * 119.96329 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.50445 * 0.25605 * 11 10 9 13 13 N 1.48012 * 119.74426 * 179.72365 * 12 11 10 14 14 O 1.31694 * 120.00138 * 6.67459 * 13 12 11 15 15 O 1.31708 * 119.99876 * 186.67514 * 13 12 11 16 16 C 1.39500 * 120.50984 * 359.48629 * 12 11 10 17 17 N 1.39667 * 119.98797 * 180.23572 * 16 12 11 18 18 C 1.46498 * 120.00259 * 174.29189 * 17 16 12 19 19 C 1.52997 * 113.00024 * 293.75558 * 18 17 16 20 20 O 1.42901 * 109.46878 * 301.19320 * 19 18 17 21 21 C 1.54032 * 113.82066 * 161.76428 * 18 17 16 22 22 O 1.44175 * 85.52126 * 268.35474 * 21 18 17 23 23 C 1.44176 * 93.33872 * 335.80735 * 22 21 18 24 24 C 1.38169 * 120.01855 * 0.51318 * 16 12 11 25 25 H 0.97000 * 119.99708 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.01888 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.74886 * 179.97438 * 11 10 9 28 28 H 0.97008 * 120.00017 * 354.29273 * 17 16 12 29 29 H 1.08999 * 109.47534 * 61.19236 * 19 18 17 30 30 H 1.09001 * 109.47458 * 181.19483 * 19 18 17 31 31 H 0.96702 * 113.99593 * 179.97438 * 20 19 18 32 32 H 1.09003 * 113.86194 * 22.50292 * 21 18 17 33 33 H 1.09000 * 113.87005 * 154.20469 * 21 18 17 34 34 H 1.08999 * 113.86544 * 270.04245 * 23 22 21 35 35 H 1.09000 * 113.86857 * 138.34112 * 23 22 21 36 36 H 1.08002 * 120.24462 * 179.76721 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6178 0.0000 4 1 2.5175 2.0229 -1.3993 5 1 1.4067 2.6641 0.6588 6 1 3.5058 1.4524 0.7405 7 6 2.0278 -1.2689 0.0006 8 1 1.5120 -2.1902 0.2278 9 6 3.4000 -1.2872 -0.2940 10 6 3.9583 -0.3078 -1.1465 11 6 5.2933 -0.3314 -1.4295 12 6 6.1097 -1.3142 -0.8907 13 7 7.5541 -1.3275 -1.2137 14 8 8.0844 -0.3371 -1.9008 15 8 8.3091 -2.3300 -0.8140 16 6 5.5812 -2.2876 -0.0427 17 7 6.4144 -3.2696 0.4978 18 6 5.8875 -4.2153 1.4849 19 6 5.4971 -3.5465 2.8045 20 8 6.6384 -2.8927 3.3630 21 6 6.7496 -5.4801 1.6566 22 8 5.9043 -6.0571 0.6412 23 6 4.8096 -5.1627 0.9250 24 6 4.2326 -2.2839 0.2581 25 1 -0.4850 0.8401 0.0004 26 1 3.3290 0.4589 -1.5738 27 1 5.7163 0.4184 -2.0817 28 1 7.3420 -3.3255 0.2197 29 1 4.7115 -2.8133 2.6218 30 1 5.1340 -4.3020 3.5013 31 1 6.4639 -2.4458 4.2026 32 1 7.7868 -5.3522 1.3467 33 1 6.6501 -5.9524 2.6340 34 1 4.1176 -5.5380 1.6789 35 1 4.3081 -4.7830 0.0349 36 1 3.8188 -3.0380 0.9112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168179154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:01 Heat of formation + Delta-G solvation = -12.374795 kcal Electronic energy + Delta-G solvation = -24342.948349 eV Core-core repulsion = 20604.852198 eV Total energy + Delta-G solvation = -3738.096151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86798 -38.84366 -36.99778 -36.51548 -34.90700 -34.01670 -32.93973 -31.38327 -30.01635 -28.26644 -27.16090 -26.39889 -24.85513 -23.66775 -21.94701 -21.16758 -19.51441 -18.32360 -17.62781 -17.21877 -16.91005 -16.38523 -16.08362 -15.88539 -15.60954 -15.24598 -14.73106 -14.56632 -14.21567 -13.79123 -13.48303 -13.28710 -12.99785 -12.65709 -12.36618 -12.19463 -11.77509 -11.61695 -11.28244 -11.15819 -10.82425 -10.69205 -10.32299 -10.06523 -10.00414 -9.88382 -9.69222 -9.68017 -9.62073 -9.31952 -8.48975 -7.88428 -7.09543 -5.32635 0.62698 2.22670 2.42018 2.61758 2.66046 2.79651 2.84196 3.38495 3.53970 3.72024 3.79044 3.95515 4.59304 4.74980 5.11020 5.18543 5.22723 5.36411 5.43282 5.53197 5.73151 5.74746 5.77911 5.90536 6.01784 6.06200 6.12415 6.22176 6.43594 6.61463 6.80241 7.05613 7.15138 7.25306 7.35026 7.64403 7.70204 7.86354 8.04457 8.11883 8.44864 9.02081 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.006701 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.769723 B = 4177.786814 C = 5351.267626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.070 3.930 3 Si 0.926 3.074 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.234 1.234 7 C -0.352 4.352 8 H 0.108 0.892 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.005 4.005 12 C -0.153 4.153 13 N 0.057 4.943 14 O -0.297 6.297 15 O -0.326 6.326 16 C 0.310 3.690 17 N -0.699 5.699 18 C 0.117 3.883 19 C 0.058 3.942 20 O -0.561 6.561 21 C 0.044 3.956 22 O -0.374 6.374 23 C 0.028 3.972 24 C -0.311 4.311 25 H 0.308 0.692 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.419 0.581 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.375 0.625 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -2.983 7.039 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.164 4.164 3 Si 0.749 3.251 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.157 1.157 7 C -0.377 4.377 8 H 0.126 0.874 9 C 0.108 3.892 10 C -0.256 4.256 11 C -0.025 4.025 12 C -0.259 4.259 13 N 0.478 4.522 14 O -0.458 6.458 15 O -0.471 6.471 16 C 0.201 3.799 17 N -0.345 5.345 18 C 0.028 3.972 19 C -0.021 4.021 20 O -0.365 6.365 21 C -0.033 4.033 22 O -0.292 6.292 23 C -0.050 4.050 24 C -0.338 4.338 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.272 0.728 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.222 0.778 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.786 -3.536 6.460 7.578 hybrid contribution 0.425 1.043 0.424 1.203 sum -1.361 -2.494 6.883 7.446 Atomic orbital electron populations 1.68951 1.09420 1.33259 1.22720 1.28083 0.94902 1.03336 0.90032 0.86098 0.81111 0.76984 0.80878 1.17870 1.20596 1.15699 1.21340 0.91425 0.94886 1.30046 0.87415 1.17555 0.92642 0.90523 0.88455 1.20953 0.93985 1.04344 1.06338 1.19952 0.92690 0.94276 0.95604 1.19472 0.77377 1.09006 1.20005 1.49905 1.03990 1.00026 0.98231 1.96124 1.78548 1.27234 1.43867 1.95700 1.60708 1.26662 1.64019 1.17182 0.90547 0.84693 0.87457 1.45606 1.15055 1.30416 1.43403 1.23066 0.95232 0.90183 0.88767 1.22762 0.89212 0.96598 0.93522 1.86533 1.35280 1.73035 1.41691 1.24156 0.97073 0.89232 0.92832 1.89714 1.26794 1.58812 1.53895 1.24554 0.91086 0.87426 1.01953 1.20315 0.89428 1.09016 1.15032 0.87953 0.86323 0.85581 0.72780 0.91411 0.92944 0.77840 0.88497 0.89030 0.89364 0.87332 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -14.22 13.89 55.98 0.78 -13.44 16 2 C 0.07 1.36 5.63 -15.19 -0.09 1.28 16 3 Si 0.93 16.12 24.57 -169.99 -4.18 11.94 16 4 H -0.25 -4.30 6.48 56.52 0.37 -3.93 16 5 H -0.28 -4.60 7.11 56.52 0.40 -4.20 16 6 H -0.23 -4.35 6.97 56.52 0.39 -3.96 16 7 C -0.35 -7.19 9.86 -35.45 -0.35 -7.54 16 8 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 9 C 0.11 2.34 5.23 -106.83 -0.56 1.78 16 10 C -0.23 -4.83 7.26 -39.04 -0.28 -5.11 16 11 C -0.01 -0.11 9.50 -40.06 -0.38 -0.49 16 12 C -0.15 -3.53 6.92 -79.32 -0.55 -4.08 16 13 N 0.06 1.42 4.98 34.27 0.17 1.59 16 14 O -0.30 -7.67 19.14 -31.56 -0.60 -8.28 16 15 O -0.33 -8.21 16.30 -31.57 -0.51 -8.72 16 16 C 0.31 6.57 6.38 -83.84 -0.53 6.04 16 17 N -0.70 -13.67 5.25 -52.15 -0.27 -13.95 16 18 C 0.12 1.82 0.73 -130.74 -0.10 1.73 16 19 C 0.06 0.79 6.15 37.16 0.23 1.02 16 20 O -0.56 -7.99 13.59 -35.23 -0.48 -8.47 16 21 C 0.04 0.62 8.54 37.61 0.32 0.94 16 22 O -0.37 -6.02 12.45 -35.23 -0.44 -6.46 16 23 C 0.03 0.40 7.11 37.61 0.27 0.67 16 24 C -0.31 -6.16 7.12 -38.51 -0.27 -6.43 16 25 H 0.31 5.27 8.27 -40.82 -0.34 4.93 16 26 H 0.12 2.28 4.21 -52.48 -0.22 2.06 16 27 H 0.13 2.54 7.57 -52.48 -0.40 2.14 16 28 H 0.42 8.91 4.87 -42.07 -0.20 8.70 16 29 H 0.07 0.99 6.12 -51.93 -0.32 0.67 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.38 3.56 9.12 45.56 0.42 3.97 16 32 H 0.10 1.38 8.09 -51.93 -0.42 0.96 16 33 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.11 1.72 6.77 -51.93 -0.35 1.37 16 36 H 0.12 2.12 4.61 -52.49 -0.24 1.87 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -27.93 303.18 -5.87 -33.80 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -2.60 Total: 17.64 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.29 Total: -10.22 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.67 Total: -25.80 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.04 Total: -31.93 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -4.18 Total: 11.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.93 -5.87 -33.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168179154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.423 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds