Wall clock time and date at job start Tue Mar 31 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29517 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47192 * 268.07246 * 3 2 1 5 5 H 1.48505 * 109.47025 * 28.07011 * 3 2 1 6 6 H 1.48505 * 109.47231 * 148.07158 * 3 2 1 7 7 C 1.46520 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00152 * 345.96709 * 7 2 1 9 9 C 1.40357 * 120.00452 * 165.97237 * 7 2 1 10 10 C 1.41339 * 120.24937 * 331.06761 * 9 7 2 11 11 C 1.36485 * 119.96329 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.50445 * 0.25605 * 11 10 9 13 13 N 1.48012 * 119.74426 * 179.72365 * 12 11 10 14 14 O 1.31694 * 120.00138 * 6.67459 * 13 12 11 15 15 O 1.31708 * 119.99876 * 186.67514 * 13 12 11 16 16 C 1.39500 * 120.50984 * 359.48629 * 12 11 10 17 17 N 1.39667 * 119.98797 * 180.23572 * 16 12 11 18 18 C 1.46498 * 120.00259 * 174.29189 * 17 16 12 19 19 C 1.52997 * 113.00024 * 293.75558 * 18 17 16 20 20 O 1.42901 * 109.46878 * 301.19320 * 19 18 17 21 21 C 1.54032 * 113.82066 * 161.76428 * 18 17 16 22 22 O 1.44175 * 85.52126 * 268.35474 * 21 18 17 23 23 C 1.44176 * 93.33872 * 335.80735 * 22 21 18 24 24 C 1.38169 * 120.01855 * 0.51318 * 16 12 11 25 25 H 0.97000 * 119.99708 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.01888 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.74886 * 179.97438 * 11 10 9 28 28 H 0.97008 * 120.00017 * 354.29273 * 17 16 12 29 29 H 1.08999 * 109.47534 * 61.19236 * 19 18 17 30 30 H 1.09001 * 109.47458 * 181.19483 * 19 18 17 31 31 H 0.96702 * 113.99593 * 179.97438 * 20 19 18 32 32 H 1.09003 * 113.86194 * 22.50292 * 21 18 17 33 33 H 1.09000 * 113.87005 * 154.20469 * 21 18 17 34 34 H 1.08999 * 113.86544 * 270.04245 * 23 22 21 35 35 H 1.09000 * 113.86857 * 138.34112 * 23 22 21 36 36 H 1.08002 * 120.24462 * 179.76721 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6178 0.0000 4 1 2.5175 2.0229 -1.3993 5 1 1.4067 2.6641 0.6588 6 1 3.5058 1.4524 0.7405 7 6 2.0278 -1.2689 0.0006 8 1 1.5120 -2.1902 0.2278 9 6 3.4000 -1.2872 -0.2940 10 6 3.9583 -0.3078 -1.1465 11 6 5.2933 -0.3314 -1.4295 12 6 6.1097 -1.3142 -0.8907 13 7 7.5541 -1.3275 -1.2137 14 8 8.0844 -0.3371 -1.9008 15 8 8.3091 -2.3300 -0.8140 16 6 5.5812 -2.2876 -0.0427 17 7 6.4144 -3.2696 0.4978 18 6 5.8875 -4.2153 1.4849 19 6 5.4971 -3.5465 2.8045 20 8 6.6384 -2.8927 3.3630 21 6 6.7496 -5.4801 1.6566 22 8 5.9043 -6.0571 0.6412 23 6 4.8096 -5.1627 0.9250 24 6 4.2326 -2.2839 0.2581 25 1 -0.4850 0.8401 0.0004 26 1 3.3290 0.4589 -1.5738 27 1 5.7163 0.4184 -2.0817 28 1 7.3420 -3.3255 0.2197 29 1 4.7115 -2.8133 2.6218 30 1 5.1340 -4.3020 3.5013 31 1 6.4639 -2.4458 4.2026 32 1 7.7868 -5.3522 1.3467 33 1 6.6501 -5.9524 2.6340 34 1 4.1176 -5.5380 1.6789 35 1 4.3081 -4.7830 0.0349 36 1 3.8188 -3.0380 0.9112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168179154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:00 Heat of formation + Delta-G solvation = -34.507247 kcal Electronic energy + Delta-G solvation = -24343.908084 eV Core-core repulsion = 20604.852198 eV Total energy + Delta-G solvation = -3739.055886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07156 -40.42066 -38.67171 -37.59943 -36.42283 -35.60092 -34.62477 -33.00631 -31.37669 -29.68807 -28.83828 -27.55136 -25.92914 -25.35322 -23.49693 -22.78337 -20.81172 -19.88098 -19.15273 -18.62265 -18.35783 -17.68175 -17.51004 -17.25943 -16.86889 -16.54481 -16.40656 -15.87146 -15.48125 -15.16972 -15.05384 -14.73745 -14.43256 -14.17480 -13.63421 -13.31946 -13.21782 -13.09014 -12.82335 -12.59270 -12.17235 -12.01649 -11.83334 -11.74031 -11.56670 -11.47332 -11.27267 -11.10427 -10.83624 -10.64062 -10.14993 -9.46652 -8.65729 -6.97277 -1.20353 0.59243 0.84361 0.94138 1.23530 1.38051 1.44276 1.97571 2.17240 2.25619 2.61458 2.84676 3.08219 3.58871 3.79290 4.07388 4.12268 4.17519 4.22899 4.27255 4.38614 4.45502 4.49738 4.55550 4.63021 4.70083 4.89089 4.94413 5.03166 5.07706 5.21542 5.41508 5.49172 5.58894 5.72649 6.10665 6.18405 6.37436 6.47719 6.82329 6.90170 7.47440 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.006701 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.769723 B = 4177.786814 C = 5351.267626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.051 3.949 3 Si 0.954 3.046 4 H -0.244 1.244 5 H -0.257 1.257 6 H -0.254 1.254 7 C -0.317 4.317 8 H 0.112 0.888 9 C 0.085 3.915 10 C -0.209 4.209 11 C -0.032 4.032 12 C -0.146 4.146 13 N 0.056 4.944 14 O -0.374 6.374 15 O -0.375 6.375 16 C 0.291 3.709 17 N -0.703 5.703 18 C 0.097 3.903 19 C 0.063 3.937 20 O -0.586 6.586 21 C 0.049 3.951 22 O -0.400 6.400 23 C 0.033 3.967 24 C -0.299 4.299 25 H 0.326 0.674 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.408 0.592 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 -3.154 9.100 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.169 1.169 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.342 4.342 8 H 0.130 0.870 9 C 0.080 3.920 10 C -0.231 4.231 11 C -0.052 4.052 12 C -0.258 4.258 13 N 0.453 4.547 14 O -0.514 6.514 15 O -0.507 6.507 16 C 0.181 3.819 17 N -0.346 5.346 18 C 0.008 3.992 19 C -0.016 4.016 20 O -0.393 6.393 21 C -0.027 4.027 22 O -0.319 6.319 23 C -0.044 4.044 24 C -0.327 4.327 25 H 0.140 0.860 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.644 -3.683 8.480 10.832 hybrid contribution 0.913 1.088 -0.020 1.421 sum -4.731 -2.594 8.460 10.034 Atomic orbital electron populations 1.68889 1.09805 1.35256 1.20076 1.28450 0.95340 1.04342 0.90248 0.85668 0.79876 0.75601 0.81354 1.16881 1.18210 1.17747 1.21671 0.91173 0.95601 1.25790 0.87031 1.17727 0.93033 0.91460 0.89767 1.21228 0.93498 1.03624 1.04759 1.20084 0.93134 0.94936 0.97014 1.20084 0.76794 1.09556 1.19395 1.49961 1.04553 1.00237 0.99972 1.96062 1.79215 1.28642 1.47507 1.95645 1.61583 1.27430 1.66047 1.17371 0.91382 0.85194 0.87986 1.45780 1.14531 1.30478 1.43806 1.23504 0.96406 0.90283 0.89005 1.22762 0.88443 0.97263 0.93138 1.86495 1.36066 1.73594 1.43186 1.24348 0.96033 0.88382 0.93984 1.89691 1.27825 1.59234 1.55166 1.24676 0.90957 0.86627 1.02140 1.20478 0.88533 1.08948 1.14718 0.85982 0.84630 0.85190 0.74086 0.92508 0.88614 0.75605 0.89863 0.85070 0.85162 0.89176 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -24.74 13.89 23.21 0.32 -24.42 16 2 C 0.05 1.75 5.63 87.19 0.49 2.24 16 3 Si 0.95 29.21 24.57 68.60 1.69 30.89 16 4 H -0.24 -7.21 6.48 99.48 0.64 -6.56 16 5 H -0.26 -7.08 7.11 99.48 0.71 -6.38 16 6 H -0.25 -8.72 6.97 99.48 0.69 -8.03 16 7 C -0.32 -11.67 9.86 24.95 0.25 -11.42 16 8 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 9 C 0.09 3.30 5.23 -21.29 -0.11 3.19 16 10 C -0.21 -8.23 7.26 22.62 0.16 -8.07 16 11 C -0.03 -1.38 9.50 21.96 0.21 -1.17 16 12 C -0.15 -7.01 6.92 36.78 0.25 -6.75 16 13 N 0.06 3.01 4.98 -45.50 -0.23 2.78 16 14 O -0.37 -21.22 19.14 3.52 0.07 -21.15 16 15 O -0.38 -20.56 16.30 3.50 0.06 -20.51 16 16 C 0.29 12.43 6.38 38.18 0.24 12.67 16 17 N -0.70 -27.99 5.25 -329.95 -1.73 -29.72 16 18 C 0.10 2.84 0.73 4.30 0.00 2.85 16 19 C 0.06 1.51 6.15 71.98 0.44 1.95 16 20 O -0.59 -15.66 13.59 -148.98 -2.03 -17.69 16 21 C 0.05 1.29 8.54 72.27 0.62 1.90 16 22 O -0.40 -12.35 12.45 -148.98 -1.86 -14.20 16 23 C 0.03 0.88 7.11 72.27 0.51 1.39 16 24 C -0.30 -11.30 7.12 22.96 0.16 -11.14 16 25 H 0.33 9.49 8.27 -92.71 -0.77 8.72 16 26 H 0.14 4.80 4.21 -2.91 -0.01 4.79 16 27 H 0.13 5.45 7.57 -2.91 -0.02 5.43 16 28 H 0.41 18.35 4.87 -112.50 -0.55 17.80 16 29 H 0.06 1.48 6.12 -2.39 -0.01 1.46 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.39 6.65 9.12 -74.06 -0.68 5.98 16 32 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 33 H 0.13 2.37 8.10 -2.39 -0.02 2.35 16 34 H 0.13 2.30 8.10 -2.39 -0.02 2.28 16 35 H 0.09 2.70 6.77 -2.39 -0.02 2.68 16 36 H 0.15 4.64 4.61 -2.91 -0.01 4.63 16 Total: -1.00 -62.76 303.18 -0.60 -63.36 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.12 Total: 43.02 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.24 Total: -12.37 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -1.64 Total: -51.36 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -3.76 Total: -73.55 kcal Atomic # 14 Polarization: 29.21 SS G_CDS: 1.69 Total: 30.89 kcal Total: -62.76 -0.60 -63.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168179154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.852 kcal (2) G-P(sol) polarization free energy of solvation -62.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds