Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86797 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47361 * 274.98430 * 3 2 1 5 5 H 1.48503 * 109.47291 * 34.98037 * 3 2 1 6 6 H 1.48500 * 109.47138 * 154.98343 * 3 2 1 7 7 C 1.40051 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 186.31222 * 7 2 1 9 9 C 1.41574 * 120.00175 * 6.32033 * 7 2 1 10 10 N 1.33446 * 119.23295 * 353.61021 * 9 7 2 11 11 C 1.32182 * 120.85398 * 179.97438 * 10 9 7 12 12 Cl 1.73603 * 120.33529 * 180.02562 * 11 10 9 13 13 C 1.38836 * 119.32725 * 0.04922 * 11 10 9 14 14 C 1.40000 * 118.59107 * 359.97222 * 13 11 10 15 15 N 1.38542 * 120.44913 * 180.02562 * 14 13 11 16 16 C 1.46496 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.53002 * 109.46997 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.47185 * 179.97438 * 17 16 15 19 19 C 1.35488 * 126.98344 * 269.68865 * 18 17 16 20 20 N 1.30521 * 107.30814 * 179.83537 * 19 18 17 21 21 N 1.28596 * 109.66991 * 0.43795 * 20 19 18 22 22 C 1.30516 * 109.67591 * 359.72234 * 21 20 19 23 23 N 1.32597 * 119.10380 * 0.02562 * 14 13 11 24 24 H 0.96996 * 120.00600 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.70464 * 180.25301 * 13 11 10 26 26 H 0.96998 * 120.00208 * 180.02562 * 15 14 13 27 27 H 1.08997 * 109.47496 * 300.00055 * 16 15 14 28 28 H 1.09004 * 109.46747 * 60.00592 * 16 15 14 29 29 H 1.08996 * 109.47627 * 300.00110 * 17 16 15 30 30 H 1.08996 * 109.46892 * 60.00497 * 17 16 15 31 31 H 1.08002 * 126.34803 * 359.97438 * 19 18 17 32 32 H 1.08002 * 126.34775 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1073 -1.3947 5 1 1.4949 2.6200 0.8027 6 1 3.5871 1.4121 0.5921 7 6 2.0072 -1.2129 0.0005 8 1 3.0823 -1.2157 0.1034 9 6 1.3058 -2.4353 -0.1339 10 7 -0.0286 -2.4248 -0.1309 11 6 -0.7156 -3.5472 -0.2548 12 17 -2.4514 -3.5178 -0.2499 13 6 -0.0350 -4.7499 -0.3884 14 6 1.3649 -4.7312 -0.3878 15 7 2.0828 -5.9087 -0.5192 16 6 1.3774 -7.1848 -0.6606 17 6 2.3960 -8.3193 -0.7881 18 7 1.6906 -9.5956 -0.9289 19 6 1.3047 -10.4279 0.0681 20 7 0.7071 -11.4472 -0.4864 21 7 0.7054 -11.3051 -1.7645 22 6 1.2966 -10.1860 -2.0831 23 7 1.9943 -3.5712 -0.2597 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5740 -5.6797 -0.4952 26 1 3.0526 -5.8883 -0.5175 27 1 0.7527 -7.3538 0.2164 28 1 0.7516 -7.1570 -1.5527 29 1 3.0204 -8.1502 -1.6653 30 1 3.0222 -8.3472 0.1037 31 1 1.4606 -10.2752 1.1258 32 1 1.4448 -9.8020 -3.0816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168870070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = 109.661643 kcal Electronic energy + Delta-G solvation = -19858.604347 eV Core-core repulsion = 16495.261665 eV Total energy + Delta-G solvation = -3363.342681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.069 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -44.03532 -40.94609 -38.06806 -37.38656 -36.04258 -35.13719 -33.20691 -31.78041 -31.54012 -29.37591 -28.35789 -25.19744 -24.04533 -23.26190 -23.21910 -22.57187 -19.92662 -18.49651 -18.41043 -17.66210 -16.91763 -16.58330 -16.35557 -16.01718 -15.83135 -15.46875 -15.43023 -15.09423 -15.00891 -14.57883 -13.51206 -13.30203 -13.18730 -13.11620 -12.73076 -12.62951 -12.52939 -12.04600 -11.94125 -11.65469 -11.33519 -11.23395 -10.95616 -10.93067 -10.43032 -10.14946 -9.44996 -8.90178 -8.45851 -6.80417 0.60970 0.89000 1.10499 1.11543 1.42530 1.44802 1.54006 1.59927 1.93718 2.20584 2.48112 2.73646 3.60842 3.61835 3.78075 3.84771 3.88386 4.18780 4.27718 4.41260 4.43046 4.46335 4.58041 4.76748 4.93706 4.94677 5.09192 5.22169 5.26845 5.92449 5.98093 6.14980 6.48252 6.61568 6.72743 7.19910 7.74774 8.17109 8.35065 Molecular weight = 294.07amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.003355 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.755401 B = 8344.778793 C = 9312.681195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.425 4.425 8 H 0.098 0.902 9 C 0.408 3.592 10 N -0.564 5.564 11 C 0.245 3.755 12 Cl -0.061 7.061 13 C -0.401 4.401 14 C 0.452 3.548 15 N -0.708 5.708 16 C 0.122 3.878 17 C 0.109 3.891 18 N -0.468 5.468 19 C 0.164 3.836 20 N -0.351 5.351 21 N -0.351 5.351 22 C 0.164 3.836 23 N -0.658 5.658 24 H 0.285 0.715 25 H 0.134 0.866 26 H 0.411 0.589 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.251 0.749 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -9.777 -1.240 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.460 4.460 8 H 0.117 0.883 9 C 0.172 3.828 10 N -0.287 5.287 11 C 0.066 3.934 12 Cl -0.033 7.033 13 C -0.433 4.433 14 C 0.204 3.796 15 N -0.346 5.346 16 C -0.003 4.003 17 C -0.013 4.013 18 N -0.159 5.159 19 C -0.125 4.125 20 N -0.189 5.189 21 N -0.189 5.189 22 C -0.125 4.125 23 N -0.389 5.389 24 H 0.096 0.904 25 H 0.152 0.848 26 H 0.249 0.751 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.267 0.733 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.060 -10.213 -1.288 11.470 hybrid contribution 0.130 1.125 0.051 1.134 sum 5.189 -9.088 -1.237 10.538 Atomic orbital electron populations 1.70222 1.09022 1.29904 1.26920 1.27087 0.95792 1.04746 0.92387 0.84930 0.79031 0.74756 0.79412 1.18734 1.19061 1.17479 1.19727 0.95527 0.88438 1.42326 0.88350 1.19850 0.84042 0.91064 0.87892 1.68588 1.08822 1.26911 1.24399 1.21925 0.86628 0.91284 0.93536 1.98293 1.09672 1.98760 1.96570 1.21161 0.93576 0.97779 1.30802 1.18342 0.87691 0.87043 0.86555 1.43700 1.08443 1.01542 1.80937 1.21539 0.95133 0.81517 1.02137 1.22095 0.93388 0.77330 1.08524 1.46444 1.43798 1.18843 1.06812 1.27227 0.98491 0.88138 0.98647 1.74176 1.20161 1.23319 1.01282 1.74172 1.20330 1.17686 1.06743 1.27226 0.98528 0.91978 0.94789 1.68249 1.40279 0.97924 1.32464 0.90430 0.84795 0.75148 0.91940 0.91963 0.85050 0.85040 0.73297 0.73311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.35 11.45 21.84 0.25 -38.10 16 2 C 0.02 1.19 5.49 85.30 0.47 1.66 16 3 Si 1.00 35.96 29.56 68.60 2.03 37.99 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.43 -22.36 9.37 23.53 0.22 -22.14 16 8 H 0.10 4.91 7.85 -2.91 -0.02 4.88 16 9 C 0.41 22.25 7.36 135.16 0.99 23.25 16 10 N -0.56 -30.96 7.89 -185.02 -1.46 -32.42 16 11 C 0.25 11.76 7.33 84.78 0.62 12.39 16 12 Cl -0.06 -2.51 29.15 -2.72 -0.08 -2.59 16 13 C -0.40 -16.62 9.23 22.84 0.21 -16.41 16 14 C 0.45 18.14 7.71 133.37 1.03 19.17 16 15 N -0.71 -18.24 5.71 -344.57 -1.97 -20.21 16 16 C 0.12 2.13 5.25 86.38 0.45 2.58 16 17 C 0.11 0.93 6.31 86.38 0.55 1.47 16 18 N -0.47 -6.27 2.75 -533.47 -1.47 -7.74 16 19 C 0.16 2.70 12.74 180.11 2.30 5.00 16 20 N -0.35 -9.04 12.21 -59.99 -0.73 -9.77 16 21 N -0.35 -9.04 12.21 -59.99 -0.73 -9.77 16 22 C 0.16 2.71 12.74 180.11 2.30 5.00 16 23 N -0.66 -31.88 10.39 -191.56 -1.99 -33.87 16 24 H 0.28 13.27 8.29 -92.71 -0.77 12.50 16 25 H 0.13 4.76 6.85 -2.91 -0.02 4.74 16 26 H 0.41 8.92 8.60 -92.71 -0.80 8.13 16 27 H 0.06 1.21 7.97 -2.39 -0.02 1.19 16 28 H 0.06 1.20 7.97 -2.38 -0.02 1.18 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.25 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.25 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -74.96 306.10 3.37 -71.59 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.39 Total: 12.93 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 9.13 Total: 31.97 kcal Atomic # 7 Polarization: -143.79 SS G_CDS: -8.10 Total: -151.89 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.59 kcal Total: -74.96 3.37 -71.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168870070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.252 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds