Wall clock time and date at job start Tue Mar 31 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47187 * 270.00059 * 3 2 1 5 5 H 1.48499 * 109.47269 * 30.00312 * 3 2 1 6 6 H 1.48511 * 109.46757 * 150.00137 * 3 2 1 7 7 C 1.37877 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00618 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99677 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40021 * 66.46073 * 9 7 2 11 11 O 1.42096 * 106.40149 * 293.54036 * 9 7 2 12 12 N 1.65598 * 107.21829 * 179.97438 * 9 7 2 13 13 C 1.39129 * 119.99996 * 64.99886 * 12 9 7 14 14 C 1.36157 * 126.28833 * 0.03935 * 13 12 9 15 15 C 1.39813 * 107.86911 * 179.97438 * 14 13 12 16 16 N 1.30842 * 108.49839 * 359.72578 * 15 14 13 17 17 N 1.36160 * 126.28997 * 180.02562 * 13 12 9 18 18 C 1.39857 * 126.11522 * 0.03050 * 17 13 12 19 19 C 1.39348 * 120.85831 * 144.99919 * 18 17 13 20 20 C 1.37980 * 119.08008 * 180.02562 * 19 18 17 21 21 N 1.31954 * 120.83370 * 0.02562 * 20 19 18 22 22 C 1.31944 * 121.88848 * 359.97438 * 21 20 19 23 23 C 1.37987 * 120.83066 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99448 * 359.97438 * 1 2 3 25 25 H 0.96994 * 119.99942 * 245.00558 * 12 9 7 26 26 H 1.07998 * 126.06368 * 359.97438 * 14 13 12 27 27 H 1.08004 * 125.74969 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.45997 * 0.02562 * 19 18 17 29 29 H 1.08004 * 119.58514 * 180.02562 * 20 19 18 30 30 H 1.07997 * 119.58728 * 179.97438 * 22 21 20 31 31 H 1.08008 * 120.45792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4518 -2.7944 -1.2520 11 8 0.4509 -2.7961 1.2475 12 7 2.2482 -3.9354 -0.0030 13 6 3.0944 -4.1011 1.0889 14 6 3.1087 -3.3429 2.2197 15 6 4.1067 -3.8451 3.0603 16 7 4.6708 -4.8676 2.4702 17 7 4.0602 -5.0515 1.2230 18 6 4.3812 -6.0386 0.2857 19 6 5.6979 -6.4621 0.1162 20 6 5.9733 -7.4380 -0.8196 21 7 5.0091 -7.9677 -1.5482 22 6 3.7506 -7.5934 -1.4172 23 6 3.3926 -6.6240 -0.5028 24 1 -0.4849 0.8401 0.0004 25 1 2.3170 -4.5318 -0.7649 26 1 2.4637 -2.5026 2.4299 27 1 4.3648 -3.4576 4.0348 28 1 6.4918 -6.0325 0.7090 29 1 6.9909 -7.7726 -0.9574 30 1 2.9911 -8.0516 -2.0334 31 1 2.3606 -6.3225 -0.4003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192942879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:13 Heat of formation + Delta-G solvation = 35.906485 kcal Electronic energy + Delta-G solvation = -21139.802493 eV Core-core repulsion = 17743.012504 eV Total energy + Delta-G solvation = -3396.789990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49694 -39.89163 -35.63994 -35.00991 -34.33365 -34.08555 -33.25056 -31.45760 -29.88476 -28.38682 -26.32300 -24.02294 -23.87607 -21.21299 -20.95867 -19.08935 -18.75393 -17.71293 -16.63450 -16.44628 -16.14750 -15.63089 -15.11891 -15.00716 -14.54475 -14.21677 -13.98260 -13.79357 -13.75982 -13.54695 -12.85119 -12.20933 -11.99548 -11.58444 -11.32781 -11.29019 -11.08473 -10.76371 -10.68863 -10.60098 -10.54616 -10.37222 -9.78637 -9.43813 -9.39060 -9.07534 -8.61577 -7.87860 -6.87342 -5.51634 0.73059 0.88819 1.67406 2.19864 2.45343 2.99495 3.06702 3.10078 3.13707 3.59104 3.87888 4.13784 4.24847 4.44601 4.48542 4.65644 4.86265 5.01732 5.17997 5.35602 5.37195 5.52146 5.56053 5.77417 5.83943 6.02096 6.18523 6.35886 6.53967 6.85132 6.95759 7.16601 7.45556 7.74065 7.77217 7.81234 8.71609 10.07350 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.005331 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.570497 B = 5251.057984 C = 5651.016341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.135 3.865 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -1.010 5.010 8 H 0.108 0.892 9 S 2.697 3.303 10 O -0.986 6.986 11 O -0.978 6.978 12 N -1.044 6.044 13 C 0.363 3.637 14 C -0.295 4.295 15 C 0.092 3.908 16 N -0.304 5.304 17 N -0.357 5.357 18 C 0.219 3.781 19 C -0.171 4.171 20 C 0.120 3.880 21 N -0.495 5.495 22 C 0.128 3.872 23 C -0.206 4.206 24 H 0.294 0.706 25 H 0.412 0.588 26 H 0.179 0.821 27 H 0.194 0.806 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -8.668 1.023 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.084 4.084 3 Si 0.749 3.251 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -1.144 5.144 8 H 0.126 0.874 9 S 2.798 3.202 10 O -0.976 6.976 11 O -0.968 6.968 12 N -0.787 5.787 13 C 0.144 3.856 14 C -0.327 4.327 15 C -0.095 4.095 16 N -0.123 5.123 17 N -0.140 5.140 18 C 0.118 3.882 19 C -0.194 4.194 20 C -0.036 4.036 21 N -0.205 5.205 22 C -0.029 4.029 23 C -0.229 4.229 24 H 0.105 0.895 25 H 0.247 0.753 26 H 0.196 0.804 27 H 0.211 0.789 28 H 0.164 0.836 29 H 0.181 0.819 30 H 0.184 0.816 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.093 -10.195 0.546 13.672 hybrid contribution 0.046 2.242 0.150 2.248 sum 9.140 -7.953 0.696 12.135 Atomic orbital electron populations 1.69877 1.06799 1.31182 1.39324 1.24745 0.94523 1.00887 0.88276 0.86068 0.80218 0.79492 0.79320 1.19156 1.19780 1.18366 1.30269 1.06211 1.10312 1.67652 0.87415 1.01398 0.71938 0.73435 0.73435 1.93426 1.71807 1.87040 1.45366 1.93417 1.71689 1.86674 1.44983 1.54547 1.50656 1.50753 1.22725 1.17900 0.87324 0.90598 0.89814 1.21436 1.08753 1.08462 0.94050 1.23799 0.93470 0.92413 0.99812 1.77492 1.21813 1.21795 0.91221 1.45868 1.29094 1.24395 1.14660 1.17723 0.93897 0.88138 0.88465 1.22028 0.95355 1.00723 1.01255 1.22720 0.99035 0.91612 0.90273 1.67717 1.00899 1.27107 1.24733 1.22674 0.93489 0.92391 0.94358 1.22187 1.00163 1.00099 1.00421 0.89541 0.75323 0.80373 0.78880 0.83599 0.81888 0.81599 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.29 13.19 55.43 0.73 -22.56 16 2 C 0.13 3.53 5.46 -17.82 -0.10 3.43 16 3 Si 0.93 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -1.01 -26.05 8.97 30.60 0.27 -25.77 16 8 H 0.11 2.59 7.81 -52.49 -0.41 2.18 16 9 S 2.70 67.35 4.58 -107.50 -0.49 66.86 16 10 O -0.99 -27.07 18.02 -57.17 -1.03 -28.10 16 11 O -0.98 -26.45 16.20 -57.17 -0.93 -27.37 16 12 N -1.04 -20.68 5.51 31.26 0.17 -20.51 16 13 C 0.36 7.01 7.35 -152.66 -1.12 5.88 16 14 C -0.29 -5.61 9.28 -39.74 -0.37 -5.98 16 15 C 0.09 1.45 12.00 -17.38 -0.21 1.24 16 16 N -0.30 -5.07 12.36 30.61 0.38 -4.69 16 17 N -0.36 -6.19 3.77 -9.61 -0.04 -6.22 16 18 C 0.22 3.29 6.43 -83.37 -0.54 2.76 16 19 C -0.17 -2.15 9.89 -39.26 -0.39 -2.54 16 20 C 0.12 1.32 11.17 -17.59 -0.20 1.12 16 21 N -0.49 -6.03 10.36 -13.33 -0.14 -6.17 16 22 C 0.13 1.48 11.17 -17.60 -0.20 1.28 16 23 C -0.21 -2.75 8.53 -39.26 -0.34 -3.08 16 24 H 0.29 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.41 7.00 6.24 -34.47 -0.22 6.79 16 26 H 0.18 3.66 6.49 -52.49 -0.34 3.32 16 27 H 0.19 2.14 8.06 -52.48 -0.42 1.71 16 28 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 1.85 6.41 -52.48 -0.34 1.51 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -33.85 292.61 -7.26 -41.10 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.13 Total: 10.40 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.18 Total: -21.67 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 1.11 Total: -60.14 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.96 Total: -55.47 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 67.35 SS G_CDS: -0.49 Total: 66.86 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.85 -7.26 -41.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.010 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds