Wall clock time and date at job start Tue Mar 31 2020 03:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47187 * 270.00059 * 3 2 1 5 5 H 1.48499 * 109.47269 * 30.00312 * 3 2 1 6 6 H 1.48511 * 109.46757 * 150.00137 * 3 2 1 7 7 C 1.37877 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00618 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99677 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40021 * 66.46073 * 9 7 2 11 11 O 1.42096 * 106.40149 * 293.54036 * 9 7 2 12 12 N 1.65598 * 107.21829 * 179.97438 * 9 7 2 13 13 C 1.39129 * 119.99996 * 64.99886 * 12 9 7 14 14 C 1.36157 * 126.28833 * 0.03935 * 13 12 9 15 15 C 1.39813 * 107.86911 * 179.97438 * 14 13 12 16 16 N 1.30842 * 108.49839 * 359.72578 * 15 14 13 17 17 N 1.36160 * 126.28997 * 180.02562 * 13 12 9 18 18 C 1.39857 * 126.11522 * 0.03050 * 17 13 12 19 19 C 1.39348 * 120.85831 * 144.99919 * 18 17 13 20 20 C 1.37980 * 119.08008 * 180.02562 * 19 18 17 21 21 N 1.31954 * 120.83370 * 0.02562 * 20 19 18 22 22 C 1.31944 * 121.88848 * 359.97438 * 21 20 19 23 23 C 1.37987 * 120.83066 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99448 * 359.97438 * 1 2 3 25 25 H 0.96994 * 119.99942 * 245.00558 * 12 9 7 26 26 H 1.07998 * 126.06368 * 359.97438 * 14 13 12 27 27 H 1.08004 * 125.74969 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.45997 * 0.02562 * 19 18 17 29 29 H 1.08004 * 119.58514 * 180.02562 * 20 19 18 30 30 H 1.07997 * 119.58728 * 179.97438 * 22 21 20 31 31 H 1.08008 * 120.45792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4518 -2.7944 -1.2520 11 8 0.4509 -2.7961 1.2475 12 7 2.2482 -3.9354 -0.0030 13 6 3.0944 -4.1011 1.0889 14 6 3.1087 -3.3429 2.2197 15 6 4.1067 -3.8451 3.0603 16 7 4.6708 -4.8676 2.4702 17 7 4.0602 -5.0515 1.2230 18 6 4.3812 -6.0386 0.2857 19 6 5.6979 -6.4621 0.1162 20 6 5.9733 -7.4380 -0.8196 21 7 5.0091 -7.9677 -1.5482 22 6 3.7506 -7.5934 -1.4172 23 6 3.3926 -6.6240 -0.5028 24 1 -0.4849 0.8401 0.0004 25 1 2.3170 -4.5318 -0.7649 26 1 2.4637 -2.5026 2.4299 27 1 4.3648 -3.4576 4.0348 28 1 6.4918 -6.0325 0.7090 29 1 6.9909 -7.7726 -0.9574 30 1 2.9911 -8.0516 -2.0334 31 1 2.3606 -6.3225 -0.4003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192942879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:12 Heat of formation + Delta-G solvation = 10.482684 kcal Electronic energy + Delta-G solvation = -21140.904952 eV Core-core repulsion = 17743.012504 eV Total energy + Delta-G solvation = -3397.892448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77591 -40.91479 -37.70101 -36.54508 -36.37974 -35.29011 -35.21500 -32.40252 -31.04310 -29.83266 -28.33429 -25.13745 -24.87484 -22.60647 -22.26281 -20.92771 -20.10757 -19.50407 -18.31965 -17.68202 -17.35366 -17.03846 -16.68498 -16.31527 -16.02440 -15.82014 -15.69478 -14.89670 -14.80275 -14.72045 -14.22791 -14.04638 -13.48145 -13.19861 -13.05114 -12.98655 -12.79059 -12.67142 -12.57140 -12.30790 -11.99617 -11.68507 -11.27733 -11.04854 -10.74555 -10.36453 -9.84014 -9.36496 -8.81679 -7.56330 -0.36983 -0.18955 -0.02673 0.89587 1.13935 1.35536 1.37122 1.53286 1.73776 2.16431 2.43995 2.53929 2.63935 3.35584 3.41785 3.45523 3.65395 3.78673 3.85871 3.98967 4.06991 4.28559 4.45881 4.53860 4.68848 4.71146 4.96944 5.05422 5.21623 5.35027 5.47979 5.64685 5.82632 6.03493 6.47493 6.71841 6.81685 8.15434 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.005331 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.570497 B = 5251.057984 C = 5651.016341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.248 1.248 7 C -1.024 5.024 8 H 0.120 0.880 9 S 2.712 3.288 10 O -1.020 7.020 11 O -1.008 7.008 12 N -1.035 6.035 13 C 0.341 3.659 14 C -0.316 4.316 15 C 0.103 3.897 16 N -0.304 5.304 17 N -0.355 5.355 18 C 0.184 3.816 19 C -0.171 4.171 20 C 0.130 3.870 21 N -0.504 5.504 22 C 0.133 3.867 23 C -0.218 4.218 24 H 0.303 0.697 25 H 0.423 0.577 26 H 0.159 0.841 27 H 0.238 0.762 28 H 0.155 0.845 29 H 0.201 0.799 30 H 0.196 0.804 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 -8.904 1.029 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.136 4.136 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.171 1.171 7 C -1.159 5.159 8 H 0.138 0.862 9 S 2.814 3.186 10 O -1.010 7.010 11 O -0.997 6.997 12 N -0.782 5.782 13 C 0.121 3.879 14 C -0.349 4.349 15 C -0.084 4.084 16 N -0.123 5.123 17 N -0.138 5.138 18 C 0.084 3.916 19 C -0.193 4.193 20 C -0.026 4.026 21 N -0.213 5.213 22 C -0.024 4.024 23 C -0.241 4.241 24 H 0.113 0.887 25 H 0.261 0.739 26 H 0.176 0.824 27 H 0.254 0.746 28 H 0.173 0.827 29 H 0.218 0.782 30 H 0.213 0.787 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.462 -10.484 0.537 15.543 hybrid contribution -0.625 2.160 0.140 2.253 sum 10.838 -8.324 0.677 13.682 Atomic orbital electron populations 1.69953 1.08593 1.32741 1.40534 1.25922 0.95361 1.04972 0.87335 0.85102 0.79252 0.74722 0.80000 1.18169 1.18356 1.17073 1.30536 1.06912 1.10873 1.67558 0.86229 1.00641 0.72059 0.73730 0.72217 1.93372 1.73353 1.87755 1.46491 1.93370 1.73148 1.87299 1.45932 1.53785 1.50477 1.50158 1.23762 1.17975 0.88284 0.91945 0.89657 1.21507 1.09782 1.08480 0.95138 1.24405 0.91773 0.91393 1.00806 1.77452 1.21831 1.21941 0.91079 1.45986 1.28347 1.24316 1.15111 1.18185 0.95492 0.88800 0.89167 1.22213 0.94473 1.00943 1.01671 1.23314 1.00399 0.90217 0.88706 1.67835 1.01245 1.27278 1.24987 1.23130 0.94114 0.91408 0.93703 1.22297 0.99846 1.00908 1.01008 0.88703 0.73946 0.82365 0.74557 0.82726 0.78182 0.78747 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.89 13.19 21.45 0.28 -49.61 16 2 C 0.08 4.12 5.46 84.65 0.46 4.58 16 3 Si 0.99 39.16 29.54 68.60 2.03 41.18 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 7 C -1.02 -53.42 8.97 67.73 0.61 -52.82 16 8 H 0.12 5.75 7.81 -2.91 -0.02 5.73 16 9 S 2.71 139.55 4.58 -56.49 -0.26 139.29 16 10 O -1.02 -57.77 18.02 -128.00 -2.31 -60.08 16 11 O -1.01 -56.59 16.20 -128.00 -2.07 -58.66 16 12 N -1.03 -41.96 5.51 -55.03 -0.30 -42.27 16 13 C 0.34 13.27 7.35 131.16 0.96 14.24 16 14 C -0.32 -12.11 9.28 22.17 0.21 -11.91 16 15 C 0.10 3.09 12.00 85.22 1.02 4.12 16 16 N -0.30 -9.71 12.36 -57.06 -0.71 -10.42 16 17 N -0.35 -12.10 3.77 -184.32 -0.69 -12.79 16 18 C 0.18 5.35 6.43 38.39 0.25 5.60 16 19 C -0.17 -3.96 9.89 22.48 0.22 -3.74 16 20 C 0.13 2.47 11.17 84.61 0.95 3.42 16 21 N -0.50 -10.99 10.36 -196.08 -2.03 -13.02 16 22 C 0.13 2.84 11.17 84.62 0.95 3.78 16 23 C -0.22 -5.67 8.53 22.48 0.19 -5.48 16 24 H 0.30 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.42 14.76 6.24 -96.75 -0.60 14.16 16 26 H 0.16 6.71 6.49 -2.91 -0.02 6.69 16 27 H 0.24 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 3.62 6.41 -2.91 -0.02 3.60 16 Total: -1.00 -73.97 292.61 0.34 -73.63 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.59 Total: 30.98 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 5.81 Total: -38.22 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -3.45 Total: -128.11 kcal Atomic # 8 Polarization: -114.36 SS G_CDS: -4.38 Total: -118.74 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 139.55 SS G_CDS: -0.26 Total: 139.29 kcal Total: -73.97 0.34 -73.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.109 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds