Wall clock time and date at job start Tue Mar 31 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48500 * 109.47211 * 239.99741 * 3 2 1 5 5 H 1.48498 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47042 * 119.99963 * 3 2 1 7 7 C 1.37875 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00310 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99738 * 0.27946 * 7 2 1 10 10 O 1.42096 * 106.40283 * 304.73846 * 9 7 2 11 11 O 1.42105 * 106.40493 * 77.65891 * 9 7 2 12 12 N 1.65606 * 107.21885 * 191.19772 * 9 7 2 13 13 C 1.39186 * 120.00141 * 298.32005 * 12 9 7 14 14 C 1.39644 * 120.83239 * 313.66230 * 13 12 9 15 15 C 1.37757 * 119.19128 * 179.77286 * 14 13 12 16 16 N 1.32076 * 120.91088 * 0.51015 * 15 14 13 17 17 C 1.32374 * 121.83350 * 359.73915 * 16 15 14 18 18 O 1.35690 * 119.64458 * 179.97438 * 17 16 15 19 19 C 1.42887 * 117.00037 * 0.02562 * 18 17 16 20 20 F 1.39904 * 109.47130 * 300.00019 * 19 18 17 21 21 F 1.39901 * 109.47723 * 59.99900 * 19 18 17 22 22 C 1.38604 * 120.70840 * 359.97438 * 17 16 15 23 23 H 0.97000 * 120.00183 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99733 * 118.31557 * 12 9 7 25 25 H 1.07998 * 120.40249 * 0.02562 * 14 13 12 26 26 H 1.08000 * 119.54202 * 180.24345 * 15 14 13 27 27 H 1.09004 * 109.47317 * 180.02562 * 19 18 17 28 28 H 1.08000 * 120.49210 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7199 -0.0062 10 8 0.2456 -2.6813 1.1103 11 8 0.6763 -2.9192 -1.3402 12 7 2.2211 -3.9209 0.3032 13 6 3.2819 -4.1367 -0.5717 14 6 3.0725 -4.1883 -1.9514 15 6 4.1476 -4.3990 -2.7866 16 7 5.3641 -4.5615 -2.2988 17 6 5.6054 -4.5248 -0.9978 18 8 6.8728 -4.6978 -0.5450 19 6 7.8885 -4.9130 -1.5266 20 9 7.5909 -6.0662 -2.2607 21 9 7.9444 -3.8129 -2.3890 22 6 4.5773 -4.3115 -0.0930 23 1 -0.4850 0.8400 -0.0004 24 1 2.1246 -4.4740 1.0942 25 1 2.0806 -4.0605 -2.3589 26 1 3.9927 -4.4360 -3.8548 27 1 8.8519 -5.0365 -1.0317 28 1 4.7780 -4.2826 0.9678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943490.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:41 Heat of formation + Delta-G solvation = -197.682533 kcal Electronic energy + Delta-G solvation = -21528.227644 eV Core-core repulsion = 17534.786193 eV Total energy + Delta-G solvation = -3993.441450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.01188 -47.13692 -40.40361 -37.99991 -35.56835 -35.09231 -34.23860 -33.21824 -30.62999 -29.83062 -26.27926 -26.19754 -23.40099 -22.53513 -19.50299 -19.16296 -18.35248 -17.80237 -17.59505 -16.89121 -16.45047 -15.55213 -15.49510 -15.19808 -14.95555 -14.79556 -14.12459 -13.88444 -13.83981 -13.61191 -13.45854 -12.99313 -12.45160 -12.26969 -12.14563 -11.91881 -11.45287 -11.27724 -11.18442 -10.70343 -10.55221 -10.47709 -10.30011 -9.50979 -9.34591 -9.12499 -8.64661 -8.44793 -6.82424 -5.47412 1.31961 1.38417 1.99975 2.52143 3.03593 3.07931 3.14085 3.53276 3.90650 3.95778 4.24627 4.34811 4.54186 4.54799 4.74749 5.11974 5.26531 5.36122 5.51478 5.71091 5.93262 6.15892 6.26411 6.53082 6.69766 7.06677 7.19375 7.51042 7.82565 7.97451 8.75607 10.11238 Molecular weight = 294.03amu Principal moments of inertia in cm(-1) A = 0.021224 B = 0.005190 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.947633 B = 5393.874823 C = 6112.755043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.014 5.014 8 H 0.103 0.897 9 S 2.700 3.300 10 O -0.983 6.983 11 O -0.996 6.996 12 N -1.068 6.068 13 C 0.253 3.747 14 C -0.221 4.221 15 C 0.156 3.844 16 N -0.542 5.542 17 C 0.313 3.687 18 O -0.320 6.320 19 C 0.426 3.574 20 F -0.196 7.196 21 F -0.194 7.194 22 C -0.204 4.204 23 H 0.293 0.707 24 H 0.418 0.582 25 H 0.173 0.827 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 -8.176 -1.330 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.148 5.148 8 H 0.121 0.879 9 S 2.801 3.199 10 O -0.974 6.974 11 O -0.986 6.986 12 N -0.811 5.811 13 C 0.146 3.854 14 C -0.244 4.244 15 C 0.001 3.999 16 N -0.265 5.265 17 C 0.135 3.865 18 O -0.233 6.233 19 C 0.335 3.665 20 F -0.177 7.177 21 F -0.175 7.175 22 C -0.229 4.229 23 H 0.104 0.896 24 H 0.252 0.748 25 H 0.191 0.809 26 H 0.184 0.816 27 H 0.190 0.810 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.489 -8.286 -1.931 15.111 hybrid contribution 0.352 1.131 0.802 1.431 sum 12.841 -7.154 -1.129 14.742 Atomic orbital electron populations 1.69895 1.06713 1.31090 1.39166 1.24735 0.94524 1.00849 0.88373 0.86153 0.79881 0.79321 0.80030 1.18663 1.19956 1.18739 1.30329 1.06044 1.10932 1.67537 0.87851 1.01146 0.72061 0.73329 0.73348 1.93408 1.63147 1.86880 1.53932 1.93342 1.79635 1.86614 1.39022 1.54175 1.41047 1.51894 1.33976 1.17315 0.86758 0.91661 0.89654 1.22877 1.03858 1.05103 0.92573 1.22211 0.85305 0.92172 1.00211 1.67336 1.26099 1.20531 1.12570 1.19224 0.83697 0.94337 0.89264 1.86750 1.14713 1.86202 1.35611 1.23036 0.91938 0.72724 0.78769 1.93092 1.94495 1.50639 1.79512 1.93107 1.96597 1.55085 1.72740 1.20948 0.89963 1.10969 1.00973 0.89611 0.74781 0.80926 0.81627 0.81046 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.75 12.84 55.43 0.71 -23.04 15 2 C 0.13 3.62 5.46 -17.82 -0.10 3.53 15 3 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 15 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 7 C -1.01 -26.95 9.61 30.60 0.29 -26.66 15 8 H 0.10 2.58 7.81 -52.49 -0.41 2.17 15 9 S 2.70 67.32 5.06 -107.50 -0.54 66.77 15 10 O -0.98 -27.28 17.58 -57.17 -1.01 -28.28 15 11 O -1.00 -26.39 15.23 -57.17 -0.87 -27.26 15 12 N -1.07 -20.19 5.78 32.52 0.19 -20.01 15 13 C 0.25 4.59 6.17 -83.64 -0.52 4.07 15 14 C -0.22 -3.96 9.29 -39.23 -0.36 -4.32 15 15 C 0.16 2.48 11.17 -17.62 -0.20 2.28 15 16 N -0.54 -9.04 8.07 -13.43 -0.11 -9.15 15 17 C 0.31 5.08 7.18 -17.18 -0.12 4.95 15 18 O -0.32 -4.36 10.41 -18.77 -0.20 -4.55 15 19 C 0.43 4.66 6.05 101.05 0.61 5.27 15 20 F -0.20 -2.50 16.57 2.25 0.04 -2.46 15 21 F -0.19 -2.62 16.57 2.25 0.04 -2.58 15 22 C -0.20 -3.30 9.99 -39.09 -0.39 -3.70 15 23 H 0.29 7.47 8.31 -40.82 -0.34 7.14 15 24 H 0.42 6.46 8.95 -34.47 -0.31 6.15 15 25 H 0.17 3.29 5.84 -52.49 -0.31 2.98 15 26 H 0.17 2.07 8.06 -52.49 -0.42 1.65 15 27 H 0.17 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.15 2.02 8.06 -52.49 -0.42 1.59 15 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -34.56 279.04 -4.77 -39.33 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -1.43 Total: 6.43 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.78 Total: -14.57 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.79 Total: -52.19 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -2.07 Total: -60.09 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 67.32 SS G_CDS: -0.54 Total: 66.77 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.56 -4.77 -39.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943490.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.352 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds