Wall clock time and date at job start Tue Mar 31 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48511 * 109.46905 * 270.00063 * 3 2 1 5 5 H 1.48505 * 109.47140 * 29.99595 * 3 2 1 6 6 H 1.48495 * 109.47168 * 150.00293 * 3 2 1 7 7 C 1.37877 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99925 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40518 * 66.46243 * 9 7 2 11 11 O 1.42108 * 106.39999 * 293.53701 * 9 7 2 12 12 N 1.65599 * 107.21820 * 180.02562 * 9 7 2 13 13 C 1.39248 * 120.00104 * 64.99576 * 12 9 7 14 14 N 1.32304 * 119.73505 * 0.02562 * 13 12 9 15 15 C 1.32014 * 121.68069 * 179.72043 * 14 13 12 16 16 C 1.38016 * 120.95282 * 0.02562 * 15 14 13 17 17 C 1.38853 * 119.36759 * 359.97438 * 16 15 14 18 18 C 1.38697 * 118.46330 * 0.02562 * 17 16 15 19 19 O 1.36006 * 120.50203 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99471 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47097 * 299.99463 * 20 19 18 22 22 F 1.39894 * 109.47421 * 60.00153 * 20 19 18 23 23 H 0.97003 * 119.99559 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00375 * 245.00139 * 12 9 7 25 25 H 1.07993 * 119.52676 * 179.97438 * 15 14 13 26 26 H 1.08000 * 120.31288 * 180.02562 * 16 15 14 27 27 H 1.07998 * 120.76729 * 180.02562 * 17 16 15 28 28 H 1.09006 * 109.46691 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4518 -2.7945 -1.2519 11 8 0.4509 -2.7961 1.2476 12 7 2.2482 -3.9354 -0.0016 13 6 3.0943 -4.1008 1.0919 14 7 2.9948 -3.2841 2.1280 15 6 3.7735 -3.4092 3.1867 16 6 4.7280 -4.4039 3.2523 17 6 4.8682 -5.2844 2.1878 18 6 4.0370 -5.1299 1.0883 19 8 4.1382 -5.9693 0.0230 20 6 5.1277 -6.9976 0.0992 21 9 6.3927 -6.4178 0.2424 22 9 4.8634 -7.8184 1.2007 23 1 -0.4850 0.8401 -0.0004 24 1 2.3176 -4.5322 -0.7631 25 1 3.6626 -2.7228 4.0131 26 1 5.3592 -4.4971 4.1237 27 1 5.6074 -6.0713 2.2154 28 1 5.1029 -7.5938 -0.8130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:17 Heat of formation + Delta-G solvation = -190.486547 kcal Electronic energy + Delta-G solvation = -21893.090103 eV Core-core repulsion = 17899.960694 eV Total energy + Delta-G solvation = -3993.129409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.032 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.51106 -47.51000 -40.47580 -38.01776 -35.25472 -34.74936 -33.95546 -33.01211 -31.65567 -29.15602 -26.39097 -26.06207 -23.32687 -22.85186 -19.28179 -18.96888 -18.68548 -18.08363 -17.90676 -17.15544 -16.37789 -15.83525 -15.25682 -15.04115 -15.02544 -14.57873 -14.28606 -13.95366 -13.84345 -13.62723 -13.47180 -13.07681 -12.93950 -12.27146 -11.99977 -11.98751 -11.28949 -11.16262 -11.00560 -10.78332 -10.55004 -10.26375 -10.15835 -9.41408 -9.21127 -9.16290 -8.76501 -7.79669 -6.64384 -5.22390 1.32632 1.44145 2.14791 2.42189 3.11526 3.17272 3.25030 3.27706 3.93619 4.00007 4.11882 4.20043 4.47264 4.66846 4.73725 4.83627 5.10719 5.24343 5.45784 5.75994 5.88182 6.15878 6.27627 6.32575 6.63538 6.95700 7.38281 7.50994 8.03283 8.30610 8.95223 10.30697 Molecular weight = 294.03amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.005497 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.746995 B = 5092.355059 C = 5422.408311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.993 4.993 8 H 0.100 0.900 9 S 2.700 3.300 10 O -0.999 6.999 11 O -0.973 6.973 12 N -1.040 6.040 13 C 0.408 3.592 14 N -0.464 5.464 15 C 0.129 3.871 16 C -0.190 4.190 17 C -0.115 4.115 18 C 0.001 3.999 19 O -0.316 6.316 20 C 0.411 3.589 21 F -0.201 7.201 22 F -0.201 7.201 23 H 0.290 0.710 24 H 0.423 0.577 25 H 0.166 0.834 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 -11.757 2.545 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.083 4.083 3 Si 0.747 3.253 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.128 5.128 8 H 0.119 0.881 9 S 2.801 3.199 10 O -0.989 6.989 11 O -0.963 6.963 12 N -0.780 5.780 13 C 0.171 3.829 14 N -0.179 5.179 15 C -0.029 4.029 16 C -0.211 4.211 17 C -0.142 4.142 18 C -0.050 4.050 19 O -0.233 6.233 20 C 0.321 3.679 21 F -0.182 7.182 22 F -0.183 7.183 23 H 0.100 0.900 24 H 0.257 0.743 25 H 0.183 0.817 26 H 0.157 0.843 27 H 0.159 0.841 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.595 -11.051 2.430 15.501 hybrid contribution 1.926 0.098 -0.132 1.933 sum 12.520 -10.954 2.298 16.793 Atomic orbital electron populations 1.69894 1.06721 1.30640 1.40607 1.24704 0.94454 1.00651 0.88530 0.86130 0.80189 0.79980 0.78988 1.19361 1.20002 1.18685 1.30195 1.05739 1.10675 1.66190 0.88134 1.01136 0.72091 0.73601 0.73087 1.93408 1.72191 1.87399 1.45927 1.93391 1.71663 1.86535 1.44720 1.54426 1.50820 1.50000 1.22791 1.17479 0.88149 0.88884 0.88375 1.67560 1.25687 1.24593 1.00061 1.22552 0.89821 0.95875 0.94606 1.21772 1.02040 0.97561 0.99773 1.21678 0.98747 1.00808 0.92966 1.19297 1.01172 0.95095 0.89393 1.86578 1.55022 1.41446 1.40249 1.23370 0.73727 0.81438 0.89390 1.93091 1.42990 1.85512 1.96646 1.93089 1.93344 1.72946 1.58895 0.89955 0.74338 0.81653 0.84347 0.84140 0.80233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.17 13.19 55.43 0.73 -24.44 15 2 C 0.13 3.79 5.46 -17.82 -0.10 3.69 15 3 Si 0.92 21.00 29.54 -169.99 -5.02 15.98 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.99 -27.99 9.34 30.60 0.29 -27.71 15 8 H 0.10 2.66 7.81 -52.49 -0.41 2.25 15 9 S 2.70 73.86 4.66 -107.50 -0.50 73.36 15 10 O -1.00 -29.41 18.02 -57.17 -1.03 -30.44 15 11 O -0.97 -29.17 16.89 -57.17 -0.97 -30.14 15 12 N -1.04 -22.35 5.85 31.25 0.18 -22.17 15 13 C 0.41 8.28 7.35 -154.70 -1.14 7.14 15 14 N -0.46 -9.85 8.34 -12.28 -0.10 -9.95 15 15 C 0.13 2.09 11.17 -17.55 -0.20 1.89 15 16 C -0.19 -2.50 10.10 -39.44 -0.40 -2.90 15 17 C -0.12 -1.62 8.35 -39.18 -0.33 -1.95 15 18 C 0.00 0.01 6.52 -38.92 -0.25 -0.24 15 19 O -0.32 -4.31 9.68 -19.76 -0.19 -4.50 15 20 C 0.41 3.85 5.97 101.05 0.60 4.45 15 21 F -0.20 -2.12 15.62 2.25 0.04 -2.08 15 22 F -0.20 -2.11 15.62 2.25 0.04 -2.07 15 23 H 0.29 7.73 8.31 -40.82 -0.34 7.39 15 24 H 0.42 7.63 8.17 -34.47 -0.28 7.35 15 25 H 0.17 2.16 8.06 -52.49 -0.42 1.74 15 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.14 1.66 5.25 -52.49 -0.28 1.39 15 28 H 0.18 0.75 8.14 -51.93 -0.42 0.33 15 LS Contribution 276.80 15.07 4.17 4.17 Total: -1.00 -37.50 276.80 -5.55 -43.05 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -1.37 Total: 4.85 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.52 Total: -15.62 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.81 Total: -56.56 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -2.19 Total: -65.08 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.07 Total: -4.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 73.86 SS G_CDS: -0.50 Total: 73.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -37.50 -5.55 -43.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.437 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds