Wall clock time and date at job start Tue Mar 31 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47337 * 300.00548 * 3 2 1 6 6 H 1.48505 * 109.46673 * 60.00394 * 3 2 1 7 7 C 1.37881 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99886 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00003 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40357 * 66.45711 * 9 7 2 11 11 O 1.42102 * 106.39914 * 293.54287 * 9 7 2 12 12 N 1.65591 * 107.21876 * 180.02562 * 9 7 2 13 13 C 1.46502 * 120.00092 * 64.99930 * 12 9 7 14 14 C 1.50708 * 109.47341 * 164.99990 * 13 12 9 15 15 C 1.38576 * 120.40773 * 104.99568 * 14 13 12 16 16 C 1.38865 * 118.41484 * 180.02562 * 15 14 13 17 17 F 1.35101 * 120.43296 * 179.97438 * 16 15 14 18 18 C 1.38425 * 119.14058 * 0.02562 * 16 15 14 19 19 N 1.31873 * 120.74297 * 359.97438 * 18 16 15 20 20 C 1.31968 * 121.72961 * 0.02562 * 19 18 16 21 21 Cl 1.73598 * 119.60477 * 179.97438 * 20 19 18 22 22 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 23 23 H 0.97004 * 120.00153 * 244.99767 * 12 9 7 24 24 H 1.09000 * 109.47195 * 45.00223 * 13 12 9 25 25 H 1.08996 * 109.47154 * 284.99879 * 13 12 9 26 26 H 1.07998 * 120.79767 * 0.05369 * 15 14 13 27 27 H 1.07997 * 119.62994 * 179.72396 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1393 -4.1088 1.1493 14 6 3.7947 -5.4640 1.0771 15 6 5.1228 -5.5816 0.6995 16 6 5.6848 -6.8504 0.6464 17 9 6.9759 -7.0122 0.2830 18 6 4.9047 -7.9472 0.9697 19 7 3.6437 -7.7965 1.3248 20 6 3.0775 -6.6060 1.3860 21 17 1.4128 -6.4715 1.8597 22 1 -0.4850 0.8400 0.0004 23 1 2.3170 -4.5325 -0.7619 24 1 2.5622 -4.0330 2.0709 25 1 3.9054 -3.3336 1.1355 26 1 5.7070 -4.7075 0.4529 27 1 5.3325 -8.9379 0.9267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003048.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:29 Heat of formation + Delta-G solvation = -108.984324 kcal Electronic energy + Delta-G solvation = -18917.942203 eV Core-core repulsion = 15356.683371 eV Total energy + Delta-G solvation = -3561.258832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 294.003 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.28905 -40.49726 -36.64889 -35.59108 -35.11318 -33.98136 -33.13633 -32.33718 -30.71800 -26.20466 -26.09014 -24.06421 -22.35644 -19.11714 -17.91726 -17.83510 -17.52388 -17.26330 -16.23687 -16.13489 -15.50710 -14.89936 -14.46916 -14.21332 -14.11041 -13.88008 -13.46603 -13.31161 -13.11379 -12.33795 -12.02887 -11.63025 -11.30833 -11.26824 -11.16262 -10.72422 -10.62122 -10.31840 -10.23041 -10.08753 -9.96902 -9.29691 -9.12317 -8.99579 -8.58552 -6.74284 -5.36916 0.42354 0.66487 1.74358 2.28225 3.02679 3.10528 3.14984 3.18688 3.65231 4.02620 4.05546 4.34254 4.37920 4.60638 4.70582 4.74792 5.05581 5.25625 5.45230 5.69798 5.84137 5.93979 6.12773 6.36433 6.70097 7.26224 7.27646 7.76064 7.91726 8.84833 10.19975 Molecular weight = 294.00amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.005136 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.868950 B = 5450.905620 C = 6346.153374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.022 5.022 8 H 0.103 0.897 9 S 2.713 3.287 10 O -1.003 7.003 11 O -0.999 6.999 12 N -1.131 6.131 13 C 0.167 3.833 14 C -0.094 4.094 15 C -0.084 4.084 16 C 0.048 3.952 17 F -0.126 7.126 18 C 0.090 3.910 19 N -0.452 5.452 20 C 0.171 3.829 21 Cl 0.002 6.998 22 H 0.291 0.709 23 H 0.403 0.597 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -11.085 2.615 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.813 3.187 10 O -0.994 6.994 11 O -0.989 6.989 12 N -0.885 5.885 13 C 0.040 3.960 14 C -0.098 4.098 15 C -0.111 4.111 16 C 0.027 3.973 17 F -0.104 7.104 18 C -0.069 4.069 19 N -0.162 5.162 20 C 0.007 3.993 21 Cl 0.031 6.969 22 H 0.101 0.899 23 H 0.234 0.766 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.180 0.820 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.639 -11.738 3.038 15.490 hybrid contribution 1.688 1.567 -0.610 2.383 sum 11.328 -10.172 2.428 15.417 Atomic orbital electron populations 1.69899 1.06787 1.30703 1.39929 1.24747 0.94465 1.00846 0.88498 0.86134 0.80397 0.80437 0.78605 1.18619 1.19624 1.19574 1.30570 1.06114 1.11812 1.67028 0.87895 1.00533 0.72045 0.73142 0.72989 1.93385 1.72761 1.87537 1.45670 1.93367 1.72523 1.87328 1.45696 1.56079 1.55526 1.51333 1.25544 1.20001 0.93943 0.90582 0.91510 1.20744 0.93317 0.96822 0.98965 1.21679 0.94672 0.97390 0.97371 1.18772 0.80512 0.95237 1.02821 1.91547 1.33555 1.96238 1.89079 1.22800 0.88462 0.98933 0.96732 1.67189 1.10958 1.25043 1.12979 1.21824 0.89831 0.89364 0.98321 1.98482 1.11790 1.97378 1.89255 0.89877 0.76610 0.88408 0.90110 0.82022 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.28 13.19 55.43 0.73 -23.55 15 2 C 0.13 3.59 5.46 -17.82 -0.10 3.50 15 3 Si 0.92 19.93 29.54 -169.99 -5.02 14.91 15 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 7 C -1.02 -26.87 9.72 30.60 0.30 -26.58 15 8 H 0.10 2.43 7.81 -52.49 -0.41 2.02 15 9 S 2.71 68.77 5.02 -107.50 -0.54 68.23 15 10 O -1.00 -28.68 18.02 -57.17 -1.03 -29.71 15 11 O -1.00 -27.68 17.49 -57.17 -1.00 -28.68 15 12 N -1.13 -20.89 5.89 -11.65 -0.07 -20.96 15 13 C 0.17 2.57 5.70 -5.19 -0.03 2.54 15 14 C -0.09 -1.22 5.30 -104.45 -0.55 -1.77 15 15 C -0.08 -0.89 9.80 -39.22 -0.38 -1.27 15 16 C 0.05 0.49 7.34 -39.28 -0.29 0.20 15 17 F -0.13 -1.24 17.28 2.25 0.04 -1.20 15 18 C 0.09 0.91 11.17 -17.46 -0.20 0.71 15 19 N -0.45 -5.80 10.34 -10.31 -0.11 -5.91 15 20 C 0.17 2.39 7.27 -17.45 -0.13 2.26 15 21 Cl 0.00 0.03 27.71 -51.86 -1.44 -1.40 15 22 H 0.29 7.50 8.31 -40.82 -0.34 7.16 15 23 H 0.40 6.59 8.65 -34.46 -0.30 6.30 15 24 H 0.10 1.59 7.20 -51.93 -0.37 1.22 15 25 H 0.08 1.08 8.00 -51.93 -0.42 0.66 15 26 H 0.16 1.37 8.05 -52.49 -0.42 0.94 15 27 H 0.18 1.20 8.06 -52.49 -0.42 0.77 15 LS Contribution 283.62 15.07 4.27 4.27 Total: -1.00 -33.92 283.62 -7.01 -40.93 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -1.48 Total: 3.48 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.38 Total: -20.42 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.56 Total: -50.42 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -2.03 Total: -58.39 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 68.77 SS G_CDS: -0.54 Total: 68.23 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.44 Total: -1.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.92 -7.01 -40.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003048.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.056 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds