Wall clock time and date at job start Tue Mar 31 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47337 * 300.00548 * 3 2 1 6 6 H 1.48505 * 109.46673 * 60.00394 * 3 2 1 7 7 C 1.37881 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99886 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00003 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40357 * 66.45711 * 9 7 2 11 11 O 1.42102 * 106.39914 * 293.54287 * 9 7 2 12 12 N 1.65591 * 107.21876 * 180.02562 * 9 7 2 13 13 C 1.46502 * 120.00092 * 64.99930 * 12 9 7 14 14 C 1.50708 * 109.47341 * 164.99990 * 13 12 9 15 15 C 1.38576 * 120.40773 * 104.99568 * 14 13 12 16 16 C 1.38865 * 118.41484 * 180.02562 * 15 14 13 17 17 F 1.35101 * 120.43296 * 179.97438 * 16 15 14 18 18 C 1.38425 * 119.14058 * 0.02562 * 16 15 14 19 19 N 1.31873 * 120.74297 * 359.97438 * 18 16 15 20 20 C 1.31968 * 121.72961 * 0.02562 * 19 18 16 21 21 Cl 1.73598 * 119.60477 * 179.97438 * 20 19 18 22 22 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 23 23 H 0.97004 * 120.00153 * 244.99767 * 12 9 7 24 24 H 1.09000 * 109.47195 * 45.00223 * 13 12 9 25 25 H 1.08996 * 109.47154 * 284.99879 * 13 12 9 26 26 H 1.07998 * 120.79767 * 0.05369 * 15 14 13 27 27 H 1.07997 * 119.62994 * 179.72396 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1393 -4.1088 1.1493 14 6 3.7947 -5.4640 1.0771 15 6 5.1228 -5.5816 0.6995 16 6 5.6848 -6.8504 0.6464 17 9 6.9759 -7.0122 0.2830 18 6 4.9047 -7.9472 0.9697 19 7 3.6437 -7.7965 1.3248 20 6 3.0775 -6.6060 1.3860 21 17 1.4128 -6.4715 1.8597 22 1 -0.4850 0.8400 0.0004 23 1 2.3170 -4.5325 -0.7619 24 1 2.5622 -4.0330 2.0709 25 1 3.9054 -3.3336 1.1355 26 1 5.7070 -4.7075 0.4529 27 1 5.3325 -8.9379 0.9267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193003048.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:27 Heat of formation + Delta-G solvation = -136.195752 kcal Electronic energy + Delta-G solvation = -18919.122179 eV Core-core repulsion = 15356.683371 eV Total energy + Delta-G solvation = -3562.438808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 294.003 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.09037 -41.44188 -37.75010 -37.40075 -36.68187 -36.08729 -35.14475 -33.41262 -31.73453 -28.23028 -27.26549 -24.99222 -23.38418 -21.04550 -19.39886 -18.85166 -18.75118 -18.32978 -18.00886 -17.09762 -16.99816 -16.61876 -15.93770 -15.42845 -15.27299 -15.18001 -14.83266 -14.53775 -14.19459 -13.95760 -13.50865 -13.17916 -13.00324 -12.71419 -12.50238 -12.45603 -12.37198 -12.32463 -12.23899 -11.24023 -11.10692 -10.98455 -10.93328 -10.24202 -9.93564 -8.72609 -7.45324 -0.51827 -0.23075 0.41918 0.70571 1.36817 1.38422 1.55297 2.19726 2.26500 2.61530 2.77666 3.04366 3.12619 3.44235 3.54207 3.76096 3.86188 4.04453 4.26098 4.55456 4.61240 4.67400 4.83742 5.00354 5.29033 5.32676 5.93682 6.29947 6.36139 6.81925 8.23930 Molecular weight = 294.00amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.005136 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.868950 B = 5450.905620 C = 6346.153374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.990 3.010 4 H -0.241 1.241 5 H -0.264 1.264 6 H -0.262 1.262 7 C -1.038 5.038 8 H 0.128 0.872 9 S 2.719 3.281 10 O -1.046 7.046 11 O -1.034 7.034 12 N -1.116 6.116 13 C 0.160 3.840 14 C -0.101 4.101 15 C -0.071 4.071 16 C 0.058 3.942 17 F -0.119 7.119 18 C 0.101 3.899 19 N -0.470 5.470 20 C 0.158 3.842 21 Cl -0.027 7.027 22 H 0.298 0.702 23 H 0.414 0.586 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.188 0.812 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -10.997 2.437 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.164 1.164 5 H -0.189 1.189 6 H -0.186 1.186 7 C -1.171 5.171 8 H 0.146 0.854 9 S 2.820 3.180 10 O -1.036 7.036 11 O -1.023 7.023 12 N -0.874 5.874 13 C 0.034 3.966 14 C -0.106 4.106 15 C -0.098 4.098 16 C 0.036 3.964 17 F -0.097 7.097 18 C -0.058 4.058 19 N -0.180 5.180 20 C -0.006 4.006 21 Cl 0.001 6.999 22 H 0.108 0.892 23 H 0.247 0.753 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.206 0.794 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.900 -11.679 2.859 17.635 hybrid contribution 0.810 1.367 -0.556 1.684 sum 13.710 -10.312 2.302 17.309 Atomic orbital electron populations 1.70005 1.08890 1.32229 1.41574 1.26030 0.95324 1.05472 0.87602 0.85093 0.79827 0.75115 0.79088 1.16382 1.18891 1.18602 1.30944 1.07528 1.12193 1.66457 0.85392 0.99952 0.72549 0.73893 0.71574 1.93318 1.74724 1.88402 1.47186 1.93318 1.74176 1.88060 1.46771 1.55389 1.55053 1.49900 1.27095 1.20189 0.93825 0.93092 0.89471 1.20432 0.94225 0.95011 1.00926 1.21896 0.93551 0.98727 0.95646 1.18715 0.80627 0.94968 1.02053 1.91578 1.33081 1.96173 1.88883 1.23370 0.87309 1.00579 0.94544 1.67187 1.12294 1.24528 1.13947 1.21814 0.88900 0.90319 0.99554 1.98470 1.14216 1.97488 1.89705 0.89220 0.75265 0.89901 0.87535 0.79432 0.77354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.47 13.19 21.45 0.28 -52.19 15 2 C 0.07 3.68 5.46 84.66 0.46 4.14 15 3 Si 0.99 39.59 29.54 68.60 2.03 41.62 15 4 H -0.24 -8.72 7.11 99.48 0.71 -8.01 15 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 7 C -1.04 -53.99 9.72 67.74 0.66 -53.33 15 8 H 0.13 5.76 7.81 -2.91 -0.02 5.74 15 9 S 2.72 140.24 5.02 -56.49 -0.28 139.95 15 10 O -1.05 -61.54 18.02 -128.00 -2.31 -63.85 15 11 O -1.03 -59.11 17.49 -128.00 -2.24 -61.34 15 12 N -1.12 -40.88 5.89 -190.78 -1.12 -42.01 15 13 C 0.16 4.75 5.70 85.64 0.49 5.24 15 14 C -0.10 -2.45 5.30 -19.76 -0.10 -2.56 15 15 C -0.07 -1.27 9.80 22.50 0.22 -1.05 15 16 C 0.06 0.96 7.34 22.46 0.16 1.12 15 17 F -0.12 -1.85 17.28 44.97 0.78 -1.08 15 18 C 0.10 1.72 11.17 84.73 0.95 2.66 15 19 N -0.47 -11.23 10.34 -186.53 -1.93 -13.16 15 20 C 0.16 4.27 7.27 84.70 0.62 4.89 15 21 Cl -0.03 -0.87 27.71 -2.72 -0.08 -0.95 15 22 H 0.30 15.67 8.31 -92.71 -0.77 14.90 15 23 H 0.41 13.39 8.65 -96.74 -0.84 12.55 15 24 H 0.08 2.72 7.20 -2.39 -0.02 2.70 15 25 H 0.11 2.58 8.00 -2.39 -0.02 2.56 15 26 H 0.19 2.33 8.05 -2.91 -0.02 2.31 15 27 H 0.21 1.98 8.06 -2.91 -0.02 1.96 15 Total: -1.00 -74.90 283.62 -1.01 -75.90 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.41 Total: 15.98 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.45 Total: -38.89 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -2.77 Total: -107.35 kcal Atomic # 8 Polarization: -120.65 SS G_CDS: -4.54 Total: -125.19 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 16 Polarization: 140.24 SS G_CDS: -0.28 Total: 139.95 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -74.90 -1.01 -75.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003048.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.292 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds