Wall clock time and date at job start Tue Mar 31 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00093 * 2 1 4 4 C 1.50702 * 109.46843 * 274.99915 * 3 2 1 5 5 H 1.07997 * 120.00088 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99497 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00440 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99674 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46930 * 59.99837 * 8 6 4 10 10 H 1.48490 * 109.46857 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46787 * 299.99858 * 8 6 4 12 12 S 1.65605 * 119.99967 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40128 * 156.46210 * 12 2 1 14 14 O 1.42100 * 106.40088 * 23.54173 * 12 2 1 15 15 N 1.65597 * 107.21506 * 270.00251 * 12 2 1 16 16 C 1.46501 * 120.00147 * 65.00201 * 15 12 2 17 17 H 1.08995 * 109.57425 * 24.84025 * 16 15 12 18 18 C 1.53089 * 109.52294 * 264.68007 * 16 15 12 19 19 O 1.42897 * 109.41656 * 182.48583 * 18 16 15 20 20 C 1.42898 * 114.10001 * 61.16248 * 19 18 16 21 21 C 1.53094 * 109.41211 * 298.84343 * 20 19 18 22 22 C 1.53175 * 109.16661 * 57.60371 * 21 20 19 23 23 H 1.09004 * 109.53853 * 62.89066 * 22 21 20 24 24 O 1.42899 * 109.54545 * 183.14980 * 22 21 20 25 25 H 1.08998 * 109.47660 * 270.00214 * 1 2 3 26 26 H 1.09002 * 109.47342 * 29.99957 * 1 2 3 27 27 H 1.09004 * 109.47539 * 149.99787 * 1 2 3 28 28 H 1.08999 * 109.47039 * 34.99673 * 3 2 1 29 29 H 1.09003 * 109.46970 * 155.00035 * 3 2 1 30 30 H 0.96997 * 119.99744 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99646 * 244.99369 * 15 12 2 32 32 H 1.09002 * 109.47970 * 302.47352 * 18 16 15 33 33 H 1.09002 * 109.48050 * 62.49834 * 18 16 15 34 34 H 1.09006 * 109.48424 * 58.82186 * 20 19 18 35 35 H 1.09002 * 109.48282 * 178.85030 * 20 19 18 36 36 H 1.09004 * 109.51815 * 297.69832 * 21 20 19 37 37 H 1.09006 * 109.52300 * 177.51290 * 21 20 19 38 38 H 0.96699 * 114.00328 * 299.56156 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9289 1.1933 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5034 3.6469 -0.6707 8 14 3.1797 3.5659 -3.4211 9 1 1.8335 3.7720 -4.0131 10 1 3.9221 4.8519 -3.4210 11 1 3.9253 2.5633 -4.2237 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4068 -0.5434 15 7 2.5379 -1.8580 1.5826 16 6 1.3944 -2.1768 2.4411 17 1 0.5591 -2.5126 1.8268 18 6 0.9821 -0.9300 3.2280 19 8 -0.0957 -1.2579 4.1069 20 6 0.2263 -2.2550 5.0786 21 6 0.6083 -3.5551 4.3661 22 6 1.7853 -3.2850 3.4236 23 1 2.6520 -2.9687 4.0041 24 8 2.1013 -4.4760 2.7000 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1176 0.4343 30 1 3.9669 4.4805 -0.8473 31 1 3.4387 -1.8952 1.9408 32 1 1.8304 -0.5711 3.8110 33 1 0.6622 -0.1520 2.5348 34 1 1.0647 -1.9135 5.6859 35 1 -0.6381 -2.4315 5.7186 36 1 -0.2430 -3.9187 3.7907 37 1 0.8969 -4.3037 5.1040 38 1 2.3581 -5.2206 3.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213479185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:48 Heat of formation + Delta-G solvation = -168.239230 kcal Electronic energy + Delta-G solvation = -23437.169840 eV Core-core repulsion = 19827.758852 eV Total energy + Delta-G solvation = -3609.410988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92694 -36.85793 -36.55340 -35.52815 -35.11659 -34.75390 -32.42518 -31.88498 -29.16189 -27.75635 -25.04774 -24.69940 -23.48166 -22.28152 -20.84258 -18.94081 -17.72182 -17.22938 -17.07140 -16.59240 -16.25837 -16.20762 -15.61746 -15.11873 -14.72698 -14.32080 -14.17199 -13.55961 -13.49997 -13.26719 -13.19040 -12.68777 -12.27253 -12.13837 -11.83204 -11.66755 -11.56364 -11.38216 -11.20326 -11.09125 -11.03342 -10.74886 -10.70071 -10.48841 -10.24161 -10.12123 -9.98387 -9.75967 -9.23256 -8.42795 -8.07069 -6.05232 -4.08934 1.23788 3.35248 3.36614 3.38731 3.43961 3.73096 3.85461 4.18447 4.42319 4.46149 4.48592 4.61121 4.79268 4.94866 5.03634 5.18136 5.27752 5.30447 5.35521 5.45586 5.54002 5.64066 5.71335 5.75186 6.03015 6.08455 6.35605 6.57354 6.94482 7.08742 7.25634 7.41504 7.43612 7.61961 7.92435 8.21778 8.93229 9.56259 11.03376 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.004886 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.375904 B = 5728.881308 C = 6200.326854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.997 5.997 3 C 0.257 3.743 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.782 3.218 13 O -0.963 6.963 14 O -0.993 6.993 15 N -1.119 6.119 16 C 0.129 3.871 17 H 0.104 0.896 18 C 0.040 3.960 19 O -0.374 6.374 20 C 0.059 3.941 21 C -0.189 4.189 22 C 0.101 3.899 23 H 0.062 0.938 24 O -0.552 6.552 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.413 0.587 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -12.479 14.101 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.840 5.840 3 C 0.135 3.865 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.789 3.211 13 O -0.947 6.947 14 O -0.976 6.976 15 N -0.877 5.877 16 C 0.020 3.980 17 H 0.122 0.878 18 C -0.039 4.039 19 O -0.291 6.291 20 C -0.018 4.018 21 C -0.228 4.228 22 C 0.040 3.960 23 H 0.080 0.920 24 O -0.356 6.356 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.573 -12.309 12.774 18.595 hybrid contribution 0.877 0.144 0.139 0.899 sum -4.697 -12.165 12.914 18.353 Atomic orbital electron populations 1.21459 0.80171 1.03742 1.00345 1.57665 1.14300 1.23360 1.88713 1.19056 0.90973 0.78705 0.97733 1.21462 1.36123 1.06313 0.92955 0.92196 1.24923 0.95084 0.96491 0.97463 1.69904 1.37342 1.15349 1.30986 0.86575 0.78303 0.77964 0.84719 1.20174 1.21197 1.20003 1.01984 0.73450 0.72882 0.72769 1.93643 1.40704 1.84897 1.75407 1.93532 1.67535 1.59962 1.76594 1.56165 1.13754 1.85702 1.32056 1.21358 0.89874 0.93652 0.93083 0.87780 1.23371 0.90778 0.96576 0.93154 1.88003 1.37190 1.57937 1.45953 1.22586 1.01452 0.87019 0.90766 1.23017 1.00333 0.99481 0.99928 1.22073 0.95881 0.86172 0.91893 0.91968 1.86672 1.90252 1.21684 1.37023 0.94044 0.90172 0.91474 0.94620 0.94452 0.92659 0.75452 0.91980 0.86614 0.92853 0.88329 0.89644 0.90218 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.45 59.84 0.63 2.16 16 2 N -1.00 -20.47 2.97 -123.05 -0.37 -20.83 16 3 C 0.26 6.35 5.08 -5.19 -0.03 6.32 16 4 C -0.53 -14.86 9.38 -34.44 -0.32 -15.18 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 S 2.78 56.30 6.08 -107.50 -0.65 55.65 16 13 O -0.96 -23.41 17.11 -57.17 -0.98 -24.39 16 14 O -0.99 -21.61 16.08 -57.17 -0.92 -22.53 16 15 N -1.12 -17.06 5.46 -4.78 -0.03 -17.08 16 16 C 0.13 1.71 2.69 -67.79 -0.18 1.53 16 17 H 0.10 1.53 7.51 -51.93 -0.39 1.14 16 18 C 0.04 0.49 6.45 37.20 0.24 0.73 16 19 O -0.37 -4.40 10.76 -35.23 -0.38 -4.78 16 20 C 0.06 0.49 6.84 37.21 0.25 0.74 16 21 C -0.19 -1.50 5.77 -26.59 -0.15 -1.65 16 22 C 0.10 1.03 3.12 -26.55 -0.08 0.94 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 O -0.55 -6.16 13.25 -35.23 -0.47 -6.62 16 25 H 0.04 0.59 6.16 -51.93 -0.32 0.27 16 26 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 27 H 0.07 1.12 7.02 -51.93 -0.36 0.75 16 28 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.41 5.51 8.84 -34.46 -0.30 5.21 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.57 5.58 -51.93 -0.29 1.28 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.38 2.29 9.09 45.56 0.41 2.70 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -35.84 324.06 -7.51 -43.34 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.57 Total: 3.52 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.25 Total: -2.73 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.35 Total: -63.26 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -2.74 Total: -58.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 56.30 SS G_CDS: -0.65 Total: 55.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.84 -7.51 -43.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213479185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.897 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds