Wall clock time and date at job start Tue Mar 31 2020 04:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00093 * 2 1 4 4 C 1.50702 * 109.46843 * 274.99915 * 3 2 1 5 5 H 1.07997 * 120.00088 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99497 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00440 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99674 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46930 * 59.99837 * 8 6 4 10 10 H 1.48490 * 109.46857 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46787 * 299.99858 * 8 6 4 12 12 S 1.65605 * 119.99967 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40128 * 156.46210 * 12 2 1 14 14 O 1.42100 * 106.40088 * 23.54173 * 12 2 1 15 15 N 1.65597 * 107.21506 * 270.00251 * 12 2 1 16 16 C 1.46501 * 120.00147 * 65.00201 * 15 12 2 17 17 H 1.08995 * 109.57425 * 24.84025 * 16 15 12 18 18 C 1.53089 * 109.52294 * 264.68007 * 16 15 12 19 19 O 1.42897 * 109.41656 * 182.48583 * 18 16 15 20 20 C 1.42898 * 114.10001 * 61.16248 * 19 18 16 21 21 C 1.53094 * 109.41211 * 298.84343 * 20 19 18 22 22 C 1.53175 * 109.16661 * 57.60371 * 21 20 19 23 23 H 1.09004 * 109.53853 * 62.89066 * 22 21 20 24 24 O 1.42899 * 109.54545 * 183.14980 * 22 21 20 25 25 H 1.08998 * 109.47660 * 270.00214 * 1 2 3 26 26 H 1.09002 * 109.47342 * 29.99957 * 1 2 3 27 27 H 1.09004 * 109.47539 * 149.99787 * 1 2 3 28 28 H 1.08999 * 109.47039 * 34.99673 * 3 2 1 29 29 H 1.09003 * 109.46970 * 155.00035 * 3 2 1 30 30 H 0.96997 * 119.99744 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99646 * 244.99369 * 15 12 2 32 32 H 1.09002 * 109.47970 * 302.47352 * 18 16 15 33 33 H 1.09002 * 109.48050 * 62.49834 * 18 16 15 34 34 H 1.09006 * 109.48424 * 58.82186 * 20 19 18 35 35 H 1.09002 * 109.48282 * 178.85030 * 20 19 18 36 36 H 1.09004 * 109.51815 * 297.69832 * 21 20 19 37 37 H 1.09006 * 109.52300 * 177.51290 * 21 20 19 38 38 H 0.96699 * 114.00328 * 299.56156 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9289 1.1933 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5034 3.6469 -0.6707 8 14 3.1797 3.5659 -3.4211 9 1 1.8335 3.7720 -4.0131 10 1 3.9221 4.8519 -3.4210 11 1 3.9253 2.5633 -4.2237 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4068 -0.5434 15 7 2.5379 -1.8580 1.5826 16 6 1.3944 -2.1768 2.4411 17 1 0.5591 -2.5126 1.8268 18 6 0.9821 -0.9300 3.2280 19 8 -0.0957 -1.2579 4.1069 20 6 0.2263 -2.2550 5.0786 21 6 0.6083 -3.5551 4.3661 22 6 1.7853 -3.2850 3.4236 23 1 2.6520 -2.9687 4.0041 24 8 2.1013 -4.4760 2.7000 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1176 0.4343 30 1 3.9669 4.4805 -0.8473 31 1 3.4387 -1.8952 1.9408 32 1 1.8304 -0.5711 3.8110 33 1 0.6622 -0.1520 2.5348 34 1 1.0647 -1.9135 5.6859 35 1 -0.6381 -2.4315 5.7186 36 1 -0.2430 -3.9187 3.7907 37 1 0.8969 -4.3037 5.1040 38 1 2.3581 -5.2206 3.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213479185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:47 Heat of formation + Delta-G solvation = -200.516273 kcal Electronic energy + Delta-G solvation = -23438.569478 eV Core-core repulsion = 19827.758852 eV Total energy + Delta-G solvation = -3610.810626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77345 -38.30139 -37.66917 -37.25530 -36.87488 -35.88849 -34.50060 -32.60824 -30.22240 -29.63791 -26.79069 -25.51831 -24.31677 -24.21155 -21.72911 -20.41428 -19.05294 -18.49427 -18.45223 -18.21861 -17.80457 -17.14204 -16.95500 -16.46600 -16.12021 -15.57404 -15.21285 -15.08027 -14.94520 -14.23156 -14.16631 -14.10601 -13.88069 -13.61857 -13.32758 -13.15383 -13.13089 -13.01452 -12.92841 -12.56794 -12.47263 -12.36337 -12.04151 -11.92259 -11.75795 -11.67672 -11.04031 -10.90293 -10.58329 -10.31813 -9.81312 -8.19695 -6.30936 -0.36407 1.39955 1.43217 1.50355 1.96937 2.40627 2.56141 2.91998 3.08294 3.11604 3.42964 3.59844 3.76615 3.84935 3.96508 4.10345 4.16384 4.38062 4.51557 4.54060 4.55912 4.75247 4.78212 4.81835 4.87499 4.99940 5.11021 5.20826 5.23603 5.46165 5.69173 5.84026 6.05714 6.12618 6.18842 6.76645 6.89857 7.37660 8.87641 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.004886 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.375904 B = 5728.881308 C = 6200.326854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.000 6.000 3 C 0.273 3.727 4 C -0.552 4.552 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.279 1.279 12 S 2.798 3.202 13 O -1.009 7.009 14 O -1.010 7.010 15 N -1.104 6.104 16 C 0.120 3.880 17 H 0.086 0.914 18 C 0.045 3.955 19 O -0.390 6.390 20 C 0.050 3.950 21 C -0.179 4.179 22 C 0.101 3.899 23 H 0.083 0.917 24 O -0.577 6.577 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.423 0.577 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -13.164 15.521 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.842 5.842 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.205 1.205 12 S 2.806 3.194 13 O -0.993 6.993 14 O -0.994 6.994 15 N -0.866 5.866 16 C 0.012 3.988 17 H 0.104 0.896 18 C -0.034 4.034 19 O -0.308 6.308 20 C -0.026 4.026 21 C -0.218 4.218 22 C 0.040 3.960 23 H 0.101 0.899 24 O -0.386 6.386 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.259 0.741 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.056 -13.017 14.210 20.200 hybrid contribution 0.976 0.255 -0.198 1.028 sum -5.080 -12.762 14.012 19.622 Atomic orbital electron populations 1.21645 0.78263 1.03722 1.02413 1.57492 1.15547 1.21944 1.89263 1.18636 0.90488 0.80056 0.95890 1.21821 1.36320 1.06670 0.94283 0.93151 1.25698 0.94779 0.96730 1.01305 1.69987 1.37794 1.15726 1.32717 0.85675 0.78771 0.77558 0.80106 1.18913 1.20041 1.20459 1.01217 0.72143 0.72488 0.73573 1.93573 1.42847 1.85471 1.77392 1.93504 1.67802 1.60269 1.77784 1.55654 1.15206 1.85112 1.30667 1.21616 0.88398 0.95588 0.93223 0.89585 1.23194 0.91383 0.95593 0.93235 1.87983 1.37169 1.59167 1.46485 1.22895 1.03145 0.86279 0.90316 1.22963 0.98780 1.00165 0.99885 1.22109 0.97690 0.85015 0.91150 0.89895 1.86614 1.90534 1.22779 1.38684 0.90995 0.90625 0.90987 0.94877 0.96298 0.92353 0.74136 0.90736 0.88349 0.91199 0.86346 0.90905 0.86829 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.91 10.45 127.77 1.34 4.24 16 2 N -1.00 -41.58 2.97 -543.23 -1.61 -43.20 16 3 C 0.27 13.73 5.08 85.63 0.43 14.16 16 4 C -0.55 -31.45 9.38 25.60 0.24 -31.21 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.83 5.46 84.66 0.46 1.29 16 7 N -0.92 -53.94 13.29 21.45 0.28 -53.66 16 8 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 S 2.80 114.79 6.08 -56.49 -0.34 114.45 16 13 O -1.01 -50.32 17.11 -128.00 -2.19 -52.51 16 14 O -1.01 -44.31 16.08 -128.00 -2.06 -46.37 16 15 N -1.10 -33.17 5.46 -169.02 -0.92 -34.09 16 16 C 0.12 3.03 2.69 45.08 0.12 3.15 16 17 H 0.09 2.49 7.51 -2.39 -0.02 2.48 16 18 C 0.04 1.04 6.45 72.01 0.46 1.51 16 19 O -0.39 -8.44 10.76 -148.98 -1.60 -10.04 16 20 C 0.05 0.66 6.84 72.01 0.49 1.16 16 21 C -0.18 -2.27 5.77 30.68 0.18 -2.10 16 22 C 0.10 1.81 3.12 30.71 0.10 1.91 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 O -0.58 -11.69 13.25 -148.98 -1.97 -13.67 16 25 H 0.07 2.01 6.16 -2.39 -0.01 2.00 16 26 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 27 H 0.07 2.39 7.02 -2.39 -0.02 2.37 16 28 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 29 H 0.02 1.02 7.61 -2.39 -0.02 1.00 16 30 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.42 11.01 8.84 -96.75 -0.86 10.15 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.60 5.58 -2.39 -0.01 2.59 16 34 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.40 3.78 9.09 -74.06 -0.67 3.11 16 Total: -1.00 -77.31 324.06 -5.01 -82.32 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.44 Total: 15.69 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 3.82 Total: -5.88 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -2.25 Total: -130.95 kcal Atomic # 8 Polarization: -114.77 SS G_CDS: -7.83 Total: -122.60 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 114.79 SS G_CDS: -0.34 Total: 114.45 kcal Total: -77.31 -5.01 -82.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213479185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.199 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds