Wall clock time and date at job start Tue Mar 31 2020 04:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34667 * 119.70811 * 2 1 4 4 O 1.21951 * 119.95634 * 359.97438 * 3 2 1 5 5 C 1.41286 * 120.08544 * 180.27660 * 3 2 1 6 6 C 1.36094 * 119.52051 * 359.73786 * 5 3 2 7 7 C 1.40420 * 119.41805 * 0.02562 * 6 5 3 8 8 C 1.36338 * 119.90732 * 359.97438 * 7 6 5 9 9 C 1.47759 * 119.75932 * 179.97438 * 8 7 6 10 10 O 1.21454 * 120.00332 * 174.40646 * 9 8 7 11 11 O 1.34758 * 120.00255 * 354.39882 * 9 8 7 12 12 C 1.45195 * 116.99925 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46894 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00064 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00247 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00442 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47398 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00215 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00418 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47201 * 59.99254 * 21 19 17 23 23 H 1.48502 * 109.47450 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46586 * 299.99808 * 21 19 17 25 25 H 1.08996 * 109.47275 * 244.95727 * 1 2 3 26 26 H 1.09000 * 109.46949 * 4.96240 * 1 2 3 27 27 H 1.08998 * 109.47306 * 124.95640 * 1 2 3 28 28 H 1.08001 * 120.23905 * 179.76680 * 5 3 2 29 29 H 1.07993 * 120.29357 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.04396 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47504 * 60.00304 * 12 11 9 32 32 H 1.09003 * 109.47382 * 300.00141 * 12 11 9 33 33 H 0.97001 * 119.99731 * 359.97438 * 15 13 12 34 34 H 1.09006 * 109.47146 * 299.99580 * 16 15 13 35 35 H 1.09001 * 109.47669 * 59.99105 * 16 15 13 36 36 H 0.97002 * 120.00345 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1697 0.0000 4 8 1.5164 2.2222 -0.0005 5 6 3.5452 1.1790 -0.0059 6 6 4.2236 -0.0008 -0.0062 7 6 3.5070 -1.2084 -0.0011 8 6 2.1438 -1.1900 0.0046 9 6 1.3931 -2.4626 0.0093 10 8 0.1833 -2.4538 0.1168 11 8 2.0506 -3.6333 -0.1058 12 6 1.2487 -4.8436 -0.0941 13 6 2.1492 -6.0441 -0.2315 14 8 3.3487 -5.8943 -0.3301 15 7 1.6216 -7.2843 -0.2458 16 6 2.4970 -8.4513 -0.3788 17 6 1.6648 -9.7076 -0.3668 18 1 0.5911 -9.6431 -0.2693 19 6 2.2740 -10.9392 -0.4801 20 7 3.5815 -11.0177 -0.5993 21 14 1.2424 -12.4965 -0.4659 22 1 0.2830 -12.4650 -1.5990 23 1 2.1297 -13.6794 -0.6019 24 1 0.4942 -12.5828 0.8139 25 1 -0.3633 -0.4350 0.9310 26 1 -0.3633 1.0238 -0.0889 27 1 -0.3634 -0.5888 -0.8422 28 1 4.0829 2.1156 -0.0097 29 1 5.3035 -0.0083 -0.0110 30 1 4.0351 -2.1505 -0.0016 31 1 0.5439 -4.8207 -0.9253 32 1 0.7002 -4.9070 0.8457 33 1 0.6623 -7.4041 -0.1673 34 1 3.0466 -8.3881 -1.3181 35 1 3.2010 -8.4742 0.4530 36 1 4.0101 -11.8842 -0.6787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319731547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:26 Heat of formation + Delta-G solvation = -134.608890 kcal Electronic energy + Delta-G solvation = -22407.058187 eV Core-core repulsion = 18663.661568 eV Total energy + Delta-G solvation = -3743.396619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.80174 -41.50371 -40.33985 -38.23025 -37.74831 -36.16720 -35.53085 -34.39838 -32.08265 -30.58174 -28.74266 -28.50030 -26.21333 -24.62372 -23.77199 -22.79241 -21.63751 -19.62442 -19.13191 -18.53675 -18.38651 -18.14130 -17.73501 -17.35902 -17.12349 -16.92626 -16.45959 -16.13195 -15.88689 -15.63470 -14.75301 -14.70389 -14.21094 -14.19514 -13.97196 -13.81711 -13.63390 -13.47387 -13.25407 -12.94571 -12.93713 -12.67638 -12.23342 -12.01493 -11.80834 -11.50662 -11.24601 -11.19982 -10.89966 -10.78968 -9.90127 -9.26992 -8.28168 -6.44225 -0.88269 0.47344 0.67444 1.23850 1.45785 1.48589 1.56677 1.57906 1.63044 2.30755 2.46932 2.48833 3.07374 3.22221 3.46786 3.67814 3.79792 4.01076 4.05650 4.06233 4.19422 4.33027 4.41742 4.62564 4.78422 4.90670 4.96267 5.11799 5.13323 5.25305 5.30784 5.43699 5.64040 5.75813 5.84406 6.24983 6.64928 6.75609 6.79423 7.22508 7.37754 8.83463 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.043376 B = 0.002515 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.366398 B =11129.709398 C =11745.006766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.482 5.482 3 C 0.501 3.499 4 O -0.591 6.591 5 C -0.207 4.207 6 C -0.016 4.016 7 C -0.119 4.119 8 C 0.095 3.905 9 C 0.515 3.485 10 O -0.500 6.500 11 O -0.326 6.326 12 C 0.063 3.937 13 C 0.500 3.500 14 O -0.580 6.580 15 N -0.699 5.699 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.086 0.914 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.263 1.263 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.176 0.824 29 H 0.190 0.810 30 H 0.176 0.824 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.413 0.587 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 19.465 1.644 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.196 5.196 3 C 0.304 3.696 4 O -0.476 6.476 5 C -0.228 4.228 6 C -0.037 4.037 7 C -0.143 4.143 8 C -0.011 4.011 9 C 0.359 3.641 10 O -0.389 6.389 11 O -0.240 6.240 12 C -0.014 4.014 13 C 0.286 3.714 14 O -0.460 6.460 15 N -0.350 5.350 16 C 0.145 3.855 17 C -0.595 4.595 18 H 0.104 0.896 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.193 0.807 29 H 0.207 0.793 30 H 0.193 0.807 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.249 0.751 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.703 20.026 1.580 20.427 hybrid contribution -0.734 -1.118 -0.005 1.337 sum -4.437 18.908 1.575 19.486 Atomic orbital electron populations 1.22342 0.75934 1.04664 1.04954 1.45400 1.10231 1.04905 1.59079 1.17847 0.90521 0.81866 0.79360 1.90920 1.70796 1.30146 1.55760 1.22718 0.90977 1.02231 1.06922 1.21926 1.03367 0.89547 0.88870 1.21681 0.90338 1.02392 0.99856 1.18858 0.92440 0.83351 1.06473 1.20666 0.85584 0.84260 0.73576 1.90891 1.14800 1.87860 1.45341 1.86554 1.40666 1.13866 1.82892 1.22885 0.91875 0.78847 1.07754 1.20599 0.88770 0.84981 0.77074 1.90698 1.17445 1.86601 1.51237 1.46028 1.12088 1.05014 1.71890 1.18614 0.89914 0.82445 0.94568 1.21588 0.94758 0.90736 1.52392 0.89633 1.26006 0.96195 1.03270 0.93945 1.70115 1.10742 1.26571 1.49352 0.85252 0.78005 0.76820 0.79430 1.18759 1.21319 1.18730 0.89368 0.89054 0.89219 0.80667 0.79260 0.80690 0.85129 0.85086 0.75091 0.98825 0.98801 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.93 127.77 1.14 2.36 16 2 N -0.48 -10.25 3.02 -660.65 -1.99 -12.24 16 3 C 0.50 11.51 7.43 85.01 0.63 12.15 16 4 O -0.59 -17.81 16.39 -5.16 -0.08 -17.90 16 5 C -0.21 -3.10 10.00 22.52 0.23 -2.88 16 6 C -0.02 -0.17 10.08 22.30 0.22 0.06 16 7 C -0.12 -1.75 9.57 22.36 0.21 -1.54 16 8 C 0.10 1.83 6.63 40.41 0.27 2.10 16 9 C 0.52 11.09 7.82 70.34 0.55 11.64 16 10 O -0.50 -11.40 13.01 19.98 0.26 -11.14 16 11 O -0.33 -7.90 8.94 -50.30 -0.45 -8.35 16 12 C 0.06 1.45 5.95 71.24 0.42 1.88 16 13 C 0.50 17.59 7.91 87.66 0.69 18.28 16 14 O -0.58 -26.06 16.50 15.77 0.26 -25.80 16 15 N -0.70 -26.15 5.55 -466.80 -2.59 -28.74 16 16 C 0.27 13.59 5.43 85.63 0.46 14.06 16 17 C -0.56 -28.49 9.28 25.60 0.24 -28.25 16 18 H 0.09 3.90 7.60 -2.91 -0.02 3.88 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 21 Si 0.98 40.54 29.54 68.60 2.03 42.56 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H 0.09 1.66 7.37 -2.39 -0.02 1.65 16 26 H 0.09 1.88 6.88 -2.39 -0.02 1.87 16 27 H 0.09 1.68 7.07 -2.39 -0.02 1.67 16 28 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.18 2.43 7.52 -2.91 -0.02 2.41 16 31 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.41 12.17 8.32 -92.71 -0.77 11.40 16 34 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -75.52 323.79 3.61 -71.91 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.36 Total: 12.66 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 5.54 Total: 30.63 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -4.30 Total: -94.56 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.01 Total: -63.19 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -75.52 3.61 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319731547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.703 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds