Wall clock time and date at job start Tue Mar 31 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35068 * 125.56636 * 2 1 4 4 O 1.21296 * 127.28103 * 359.72110 * 3 2 1 5 5 C 1.49981 * 105.43251 * 179.73661 * 3 2 1 6 6 O 1.21296 * 127.28558 * 179.97438 * 5 3 2 7 7 N 1.35062 * 105.43027 * 0.02562 * 5 3 2 8 8 C 1.46506 * 125.56831 * 179.97438 * 7 5 3 9 9 C 1.50695 * 109.46956 * 90.02340 * 8 7 5 10 10 O 1.21294 * 120.00669 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00183 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00206 * 20.21837 * 12 11 9 14 14 C 1.38952 * 120.00246 * 200.21058 * 12 11 9 15 15 N 1.31407 * 119.99782 * 21.43522 * 14 12 11 16 16 Si 1.86801 * 120.00387 * 201.43920 * 14 12 11 17 17 H 1.48499 * 109.47042 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47273 * 120.00024 * 16 14 12 19 19 H 1.48502 * 109.46889 * 240.00008 * 16 14 12 20 20 C 1.46504 * 120.00058 * 359.97438 * 11 9 8 21 21 C 1.47197 * 109.46973 * 83.95477 * 20 11 9 22 22 N 7.42973 * 165.21452 * 187.47890 * 2 1 3 23 23 C 1.34278 * 108.86937 * 359.97438 * 7 5 3 24 24 O 1.21480 * 124.30042 * 180.02562 * 23 7 5 25 25 H 1.08997 * 109.46630 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46732 * 120.02021 * 1 2 3 27 27 H 1.08999 * 109.46769 * 240.02263 * 1 2 3 28 28 H 1.08998 * 109.47335 * 210.02670 * 8 7 5 29 29 H 1.08998 * 109.46950 * 330.02694 * 8 7 5 30 30 H 0.97001 * 120.00232 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47479 * 203.95663 * 20 11 9 32 32 H 1.08998 * 109.46911 * 323.95565 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2577 -0.0047 5 6 3.6588 0.5825 0.0066 6 8 4.6809 1.2356 0.0083 7 7 3.5480 -0.7636 0.0092 8 6 4.6658 -1.7106 0.0152 9 6 5.0438 -2.0326 1.4380 10 8 4.4387 -1.5218 2.3568 11 7 6.0542 -2.8883 1.6897 12 6 6.3984 -3.1808 2.9841 13 1 5.6927 -3.0075 3.7829 14 6 7.6554 -3.7005 3.2683 15 7 8.6445 -3.5285 2.4204 16 14 7.9391 -4.6438 4.8555 17 1 6.6748 -4.6968 5.6326 18 1 8.3838 -6.0246 4.5380 19 1 8.9845 -3.9593 5.6579 20 6 6.7848 -3.5058 0.5801 21 6 7.8367 -2.5878 0.1139 22 7 8.6487 -1.8799 -0.2468 23 6 2.2461 -1.0922 0.0055 24 8 1.8279 -2.2328 0.0070 25 1 -0.3632 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5135 0.8902 28 1 4.3697 -2.6255 -0.4980 29 1 5.5202 -1.2674 -0.4962 30 1 9.5221 -3.8910 2.6189 31 1 7.2389 -4.4374 0.9177 32 1 6.0951 -3.7135 -0.2380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321783921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:23 Heat of formation + Delta-G solvation = -35.291260 kcal Electronic energy + Delta-G solvation = -23685.141040 eV Core-core repulsion = 19842.510813 eV Total energy + Delta-G solvation = -3842.630226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.084 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.32805 -39.40389 -39.14089 -38.50480 -36.44448 -36.01403 -35.16036 -34.40085 -32.10831 -30.27714 -27.71488 -27.11359 -25.64412 -24.67311 -22.15074 -21.77280 -19.73043 -18.15089 -18.00670 -17.64483 -17.10467 -16.68016 -16.50165 -16.41020 -15.55295 -15.29021 -14.96134 -14.64664 -14.39208 -14.15189 -14.03728 -13.32557 -13.18011 -12.96974 -12.91833 -12.71979 -12.36359 -11.93156 -11.71474 -11.43290 -11.23381 -11.03448 -10.71445 -10.50696 -10.44223 -10.35640 -10.17641 -10.13715 -9.40799 -8.77759 -8.19530 -6.63339 -4.14807 0.28881 1.72267 1.99929 2.49323 2.60841 2.99142 3.16762 3.22833 3.34792 3.60782 3.84003 3.85427 4.01801 4.48436 4.54443 4.75791 4.96319 5.02682 5.03206 5.10324 5.19351 5.32094 5.34474 5.39242 5.62838 5.90514 6.32015 6.51279 6.67135 7.14847 7.35753 7.49438 7.71322 8.11094 8.62025 8.82182 9.01063 9.49377 10.42552 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.004820 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.024847 B = 5807.736166 C = 6268.844204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.576 5.576 3 C 0.515 3.485 4 O -0.420 6.420 5 C 0.510 3.490 6 O -0.404 6.404 7 N -0.551 5.551 8 C 0.103 3.897 9 C 0.437 3.563 10 O -0.564 6.564 11 N -0.431 5.431 12 C -0.315 4.315 13 H 0.110 0.890 14 C 0.036 3.964 15 N -0.871 5.871 16 Si 0.929 3.071 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.282 1.282 20 C 0.217 3.783 21 C 0.237 3.763 22 N -0.460 5.460 23 C 0.717 3.283 24 O -0.485 6.485 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.275 0.725 31 H 0.130 0.870 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -0.460 -7.782 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.326 5.326 3 C 0.296 3.704 4 O -0.285 6.285 5 C 0.290 3.710 6 O -0.268 6.268 7 N -0.299 5.299 8 C -0.021 4.021 9 C 0.224 3.776 10 O -0.446 6.446 11 N -0.151 5.151 12 C -0.442 4.442 13 H 0.128 0.872 14 C -0.169 4.169 15 N -0.509 5.509 16 Si 0.755 3.245 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.208 1.208 20 C 0.089 3.911 21 C -0.082 4.082 22 N -0.140 5.140 23 C 0.420 3.580 24 O -0.353 6.353 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.309 1.138 -7.849 13.813 hybrid contribution 0.233 -0.809 1.023 1.325 sum -11.076 0.329 -6.826 13.015 Atomic orbital electron populations 1.21937 0.73484 1.05006 1.04459 1.46531 1.09836 1.07270 1.68990 1.20913 0.87835 0.85517 0.76140 1.90815 1.79598 1.16675 1.41442 1.20761 0.90684 0.82560 0.76962 1.90864 1.33368 1.62548 1.39992 1.46117 1.07504 1.08452 1.67797 1.21746 0.87605 0.93354 0.99367 1.20062 0.85721 0.82323 0.89510 1.90583 1.55196 1.53201 1.45602 1.43578 1.27937 1.37414 1.06163 1.19752 0.99538 1.41319 0.83593 0.87226 1.25340 0.94181 0.97759 0.99661 1.69842 1.01451 1.41764 1.37794 0.85811 0.78726 0.78970 0.80952 1.18996 1.20281 1.20768 1.18789 0.88567 0.94654 0.89051 1.29211 0.94098 0.93892 0.90967 1.80937 1.10507 1.10129 1.12405 1.15763 0.80718 0.84868 0.76620 1.91003 1.76090 1.18300 1.49929 0.88388 0.89743 0.89650 0.85916 0.86508 0.91406 0.85255 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.95 59.85 0.66 1.35 16 2 N -0.58 -6.98 3.06 -128.66 -0.39 -7.38 16 3 C 0.52 7.20 8.31 -11.20 -0.09 7.11 16 4 O -0.42 -6.34 17.65 5.54 0.10 -6.24 16 5 C 0.51 8.37 8.31 -11.20 -0.09 8.27 16 6 O -0.40 -7.77 17.88 5.54 0.10 -7.67 16 7 N -0.55 -8.77 2.15 -122.51 -0.26 -9.03 16 8 C 0.10 1.66 4.95 -5.19 -0.03 1.64 16 9 C 0.44 9.41 7.63 -10.99 -0.08 9.32 16 10 O -0.56 -14.24 16.10 5.55 0.09 -14.15 16 11 N -0.43 -9.46 2.60 -117.94 -0.31 -9.77 16 12 C -0.32 -7.77 9.27 -14.93 -0.14 -7.91 16 13 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 14 C 0.04 0.84 4.84 -17.47 -0.08 0.75 16 15 N -0.87 -21.11 9.58 55.50 0.53 -20.58 16 16 Si 0.93 18.94 29.60 -169.99 -5.03 13.91 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 C 0.22 3.89 4.91 -6.83 -0.03 3.86 16 21 C 0.24 4.89 12.82 -20.76 -0.27 4.62 16 22 N -0.46 -10.45 18.54 42.15 0.78 -9.67 16 23 C 0.72 10.49 8.32 -87.81 -0.73 9.75 16 24 O -0.48 -7.80 17.38 5.38 0.09 -7.70 16 25 H 0.10 0.61 7.76 -51.93 -0.40 0.21 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.12 1.52 7.25 -51.93 -0.38 1.14 16 29 H 0.12 1.79 7.45 -51.93 -0.39 1.41 16 30 H 0.28 6.46 8.31 -40.82 -0.34 6.13 16 31 H 0.13 2.36 6.63 -51.93 -0.34 2.02 16 32 H 0.09 1.09 6.69 -51.93 -0.35 0.74 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -33.35 303.98 -2.84 -36.19 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.23 Total: -1.26 kcal Atomic # 6 Polarization: 39.67 SS G_CDS: -0.89 Total: 38.77 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.35 Total: -56.43 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: 0.38 Total: -35.77 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.35 -2.84 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321783921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.898 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds