Wall clock time and date at job start Tue Mar 31 2020 03:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35068 * 125.56636 * 2 1 4 4 O 1.21296 * 127.28103 * 359.72110 * 3 2 1 5 5 C 1.49981 * 105.43251 * 179.73661 * 3 2 1 6 6 O 1.21296 * 127.28558 * 179.97438 * 5 3 2 7 7 N 1.35062 * 105.43027 * 0.02562 * 5 3 2 8 8 C 1.46506 * 125.56831 * 179.97438 * 7 5 3 9 9 C 1.50695 * 109.46956 * 90.02340 * 8 7 5 10 10 O 1.21294 * 120.00669 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00183 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00206 * 20.21837 * 12 11 9 14 14 C 1.38952 * 120.00246 * 200.21058 * 12 11 9 15 15 N 1.31407 * 119.99782 * 21.43522 * 14 12 11 16 16 Si 1.86801 * 120.00387 * 201.43920 * 14 12 11 17 17 H 1.48499 * 109.47042 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47273 * 120.00024 * 16 14 12 19 19 H 1.48502 * 109.46889 * 240.00008 * 16 14 12 20 20 C 1.46504 * 120.00058 * 359.97438 * 11 9 8 21 21 C 1.47197 * 109.46973 * 83.95477 * 20 11 9 22 22 N 7.42973 * 165.21452 * 187.47890 * 2 1 3 23 23 C 1.34278 * 108.86937 * 359.97438 * 7 5 3 24 24 O 1.21480 * 124.30042 * 180.02562 * 23 7 5 25 25 H 1.08997 * 109.46630 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46732 * 120.02021 * 1 2 3 27 27 H 1.08999 * 109.46769 * 240.02263 * 1 2 3 28 28 H 1.08998 * 109.47335 * 210.02670 * 8 7 5 29 29 H 1.08998 * 109.46950 * 330.02694 * 8 7 5 30 30 H 0.97001 * 120.00232 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47479 * 203.95663 * 20 11 9 32 32 H 1.08998 * 109.46911 * 323.95565 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2577 -0.0047 5 6 3.6588 0.5825 0.0066 6 8 4.6809 1.2356 0.0083 7 7 3.5480 -0.7636 0.0092 8 6 4.6658 -1.7106 0.0152 9 6 5.0438 -2.0326 1.4380 10 8 4.4387 -1.5218 2.3568 11 7 6.0542 -2.8883 1.6897 12 6 6.3984 -3.1808 2.9841 13 1 5.6927 -3.0075 3.7829 14 6 7.6554 -3.7005 3.2683 15 7 8.6445 -3.5285 2.4204 16 14 7.9391 -4.6438 4.8555 17 1 6.6748 -4.6968 5.6326 18 1 8.3838 -6.0246 4.5380 19 1 8.9845 -3.9593 5.6579 20 6 6.7848 -3.5058 0.5801 21 6 7.8367 -2.5878 0.1139 22 7 8.6487 -1.8799 -0.2468 23 6 2.2461 -1.0922 0.0055 24 8 1.8279 -2.2328 0.0070 25 1 -0.3632 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5135 0.8902 28 1 4.3697 -2.6255 -0.4980 29 1 5.5202 -1.2674 -0.4962 30 1 9.5221 -3.8910 2.6189 31 1 7.2389 -4.4374 0.9177 32 1 6.0951 -3.7135 -0.2380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321783921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:21 Heat of formation + Delta-G solvation = -59.249467 kcal Electronic energy + Delta-G solvation = -23686.179946 eV Core-core repulsion = 19842.510813 eV Total energy + Delta-G solvation = -3843.669132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.084 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -44.51062 -40.86192 -40.44162 -39.88247 -37.74717 -37.59061 -36.46310 -36.06081 -33.88400 -31.45368 -29.25727 -28.30493 -26.82027 -26.30727 -23.37287 -22.94935 -21.26529 -19.84570 -19.25496 -18.89752 -18.36713 -18.15450 -17.93622 -17.71506 -16.81624 -16.54220 -16.51281 -15.90112 -15.77712 -15.75907 -15.54203 -14.79459 -14.54225 -14.14825 -14.00888 -13.95929 -13.57738 -13.50867 -13.32270 -13.13308 -12.90697 -12.39827 -12.24164 -12.18440 -12.06566 -11.74858 -11.41822 -11.17794 -11.11757 -10.45219 -9.98198 -8.45022 -6.02621 -0.93203 0.59228 0.85233 1.32698 1.34727 1.39883 1.49736 1.61278 1.71777 1.99126 2.23873 2.34580 2.65876 2.94737 2.98707 3.44442 3.54027 3.75421 3.95582 4.05743 4.11007 4.24057 4.49547 4.55728 4.65974 4.80435 4.86711 5.34744 5.46085 5.50527 5.90463 5.97981 6.29541 6.38161 7.00167 7.04319 7.24418 7.76362 8.58655 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.004820 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.024847 B = 5807.736166 C = 6268.844204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.563 5.563 3 C 0.529 3.471 4 O -0.429 6.429 5 C 0.506 3.494 6 O -0.442 6.442 7 N -0.556 5.556 8 C 0.109 3.891 9 C 0.430 3.570 10 O -0.610 6.610 11 N -0.442 5.442 12 C -0.340 4.340 13 H 0.082 0.918 14 C 0.011 3.989 15 N -0.887 5.887 16 Si 0.986 3.014 17 H -0.272 1.272 18 H -0.260 1.260 19 H -0.291 1.291 20 C 0.215 3.785 21 C 0.252 3.748 22 N -0.502 5.502 23 C 0.721 3.279 24 O -0.494 6.494 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.126 0.874 30 H 0.276 0.724 31 H 0.129 0.871 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -1.583 -8.823 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.312 5.312 3 C 0.309 3.691 4 O -0.295 6.295 5 C 0.288 3.712 6 O -0.308 6.308 7 N -0.303 5.303 8 C -0.015 4.015 9 C 0.218 3.782 10 O -0.496 6.496 11 N -0.162 5.162 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.193 4.193 15 N -0.524 5.524 16 Si 0.811 3.189 17 H -0.196 1.196 18 H -0.184 1.184 19 H -0.218 1.218 20 C 0.089 3.911 21 C -0.066 4.066 22 N -0.183 5.183 23 C 0.424 3.576 24 O -0.364 6.364 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.186 0.814 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.701 -0.012 -8.922 15.522 hybrid contribution 0.597 -0.447 1.372 1.562 sum -12.104 -0.459 -7.550 14.273 Atomic orbital electron populations 1.22386 0.70472 1.06710 1.06109 1.46584 1.11190 1.05589 1.67793 1.20408 0.86892 0.85642 0.76110 1.90820 1.79414 1.17081 1.42182 1.21242 0.91416 0.82754 0.75809 1.90839 1.34919 1.63299 1.41725 1.46192 1.08189 1.08325 1.67625 1.21784 0.88467 0.95444 0.95767 1.20968 0.84713 0.81125 0.91383 1.90548 1.56603 1.54652 1.47773 1.43737 1.28232 1.37898 1.06310 1.19603 0.99600 1.42881 0.84683 0.90031 1.25899 0.93553 0.97740 1.02065 1.69916 1.01552 1.42030 1.38941 0.84978 0.77764 0.78469 0.77704 1.19600 1.18446 1.21757 1.19239 0.88945 0.93267 0.89695 1.29731 0.93731 0.93297 0.89830 1.80946 1.11917 1.11431 1.13980 1.15788 0.80383 0.85188 0.76221 1.91001 1.76151 1.18790 1.50429 0.86717 0.87292 0.88864 0.81405 0.85573 0.91350 0.85360 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.95 127.77 1.40 2.39 16 2 N -0.56 -12.38 3.06 -797.76 -2.44 -14.83 16 3 C 0.53 14.09 8.31 87.39 0.73 14.81 16 4 O -0.43 -12.39 17.65 -3.08 -0.05 -12.44 16 5 C 0.51 16.32 8.31 87.39 0.73 17.05 16 6 O -0.44 -17.15 17.88 -3.08 -0.06 -17.21 16 7 N -0.56 -16.86 2.15 -778.32 -1.67 -18.53 16 8 C 0.11 3.28 4.95 85.63 0.42 3.71 16 9 C 0.43 18.22 7.63 87.66 0.67 18.89 16 10 O -0.61 -31.27 16.10 -3.07 -0.05 -31.32 16 11 N -0.44 -19.11 2.60 -645.42 -1.68 -20.79 16 12 C -0.34 -16.93 9.27 84.04 0.78 -16.15 16 13 H 0.08 4.45 7.43 -2.91 -0.02 4.43 16 14 C 0.01 0.51 4.84 84.93 0.41 0.92 16 15 N -0.89 -42.54 9.58 21.66 0.21 -42.33 16 16 Si 0.99 38.72 29.60 68.60 2.03 40.75 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.21 7.25 4.91 84.57 0.42 7.67 16 21 C 0.25 10.09 12.82 89.44 1.15 11.23 16 22 N -0.50 -22.59 18.54 20.01 0.37 -22.22 16 23 C 0.72 19.54 8.32 179.37 1.49 21.03 16 24 O -0.49 -14.60 17.38 -3.65 -0.06 -14.66 16 25 H 0.11 1.07 7.76 -2.39 -0.02 1.06 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.17 3.46 7.25 -2.39 -0.02 3.45 16 29 H 0.13 3.63 7.45 -2.39 -0.02 3.61 16 30 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 31 H 0.13 4.45 6.63 -2.39 -0.02 4.43 16 32 H 0.15 3.11 6.69 -2.39 -0.02 3.10 16 Total: -1.00 -74.00 303.98 5.99 -68.01 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.20 Total: 4.02 kcal Atomic # 6 Polarization: 73.36 SS G_CDS: 8.19 Total: 81.55 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -5.21 Total: -118.70 kcal Atomic # 8 Polarization: -75.40 SS G_CDS: -0.22 Total: -75.63 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -74.00 5.99 -68.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321783921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.759 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds