Wall clock time and date at job start Tue Mar 31 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48511 * 109.46998 * 239.99667 * 3 2 1 5 5 H 1.48501 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47494 * 119.99513 * 3 2 1 7 7 C 1.38693 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99985 * 180.02562 * 7 2 1 9 9 O 1.34817 * 120.00626 * 0.02562 * 7 2 1 10 10 C 1.35519 * 117.00144 * 185.06457 * 9 7 2 11 11 C 1.38831 * 120.16243 * 354.39671 * 10 9 7 12 12 C 1.38026 * 120.07205 * 180.02562 * 11 10 9 13 13 C 1.38580 * 120.40073 * 0.02562 * 12 11 10 14 14 C 1.37830 * 120.32046 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.92214 * 359.97438 * 14 13 12 16 16 C 1.47535 * 120.19576 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00087 * 179.97438 * 16 15 14 18 18 N 1.34780 * 119.99867 * 359.97438 * 16 15 14 19 19 C 1.46501 * 119.99533 * 179.97438 * 18 16 15 20 20 H 1.09005 * 109.47064 * 35.00714 * 19 18 16 21 21 C 1.53003 * 109.46584 * 155.00266 * 19 18 16 22 22 O 1.42900 * 109.47274 * 65.00272 * 21 19 18 23 23 C 1.50695 * 109.47468 * 275.00084 * 19 18 16 24 24 N 1.34777 * 120.00117 * 180.02562 * 23 19 18 25 25 O 1.21284 * 119.99980 * 0.02562 * 23 19 18 26 26 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.96669 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.80172 * 179.72464 * 12 11 10 29 29 H 1.08001 * 119.83584 * 179.97438 * 13 12 11 30 30 H 1.08003 * 120.03660 * 180.02562 * 14 13 12 31 31 H 0.96994 * 120.00405 * 359.97438 * 18 16 15 32 32 H 1.09002 * 109.46734 * 185.00340 * 21 19 18 33 33 H 1.08998 * 109.47095 * 304.99936 * 21 19 18 34 34 H 0.96698 * 113.99390 * 180.02562 * 22 21 19 35 35 H 0.97008 * 119.99762 * 0.02562 * 24 23 19 36 36 H 0.97004 * 120.00360 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0086 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5029 0.1077 11 6 3.4555 -3.4401 0.0942 12 6 4.2012 -4.5964 0.2029 13 6 3.5744 -5.8263 0.3255 14 6 2.1986 -5.9076 0.3407 15 6 1.4308 -4.7459 0.2327 16 6 -0.0423 -4.8258 0.2489 17 8 -0.7072 -3.8122 0.1551 18 7 -0.6509 -6.0225 0.3677 19 6 -2.1137 -6.1018 0.3843 20 1 -2.5264 -5.3411 -0.2786 21 6 -2.5547 -7.4872 -0.0923 22 8 -2.1120 -8.4750 0.8406 23 6 -2.6135 -5.8704 1.7870 24 7 -3.9362 -5.8978 2.0442 25 8 -1.8254 -5.6596 2.6845 26 1 -0.4850 0.8400 -0.0004 27 1 3.9513 -2.4855 -0.0014 28 1 5.2798 -4.5430 0.1874 29 1 4.1669 -6.7253 0.4095 30 1 1.7148 -6.8684 0.4369 31 1 -0.1206 -6.8311 0.4421 32 1 -3.6419 -7.5173 -0.1648 33 1 -2.1195 -7.6904 -1.0707 34 1 -2.3567 -9.3794 0.6013 35 1 -4.5665 -6.0668 1.3264 36 1 -4.2580 -5.7485 2.9471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323076836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:17 Heat of formation + Delta-G solvation = -112.346381 kcal Electronic energy + Delta-G solvation = -23691.955820 eV Core-core repulsion = 19949.524577 eV Total energy + Delta-G solvation = -3742.431244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06021 -39.10972 -37.67692 -36.96887 -36.25404 -33.87774 -33.47997 -32.28017 -30.85770 -28.92949 -28.74576 -25.32952 -24.17298 -22.97943 -21.45114 -20.30517 -19.83662 -18.07177 -17.97659 -17.52028 -17.37332 -16.44707 -16.10346 -15.46369 -14.79165 -14.58267 -14.41159 -14.16815 -14.10796 -13.93985 -13.72685 -13.56034 -13.09826 -12.67424 -12.43411 -12.23071 -11.71231 -11.65673 -11.26617 -11.05924 -10.83220 -10.72821 -10.51561 -10.43101 -9.85225 -9.52156 -9.49900 -8.84401 -8.81333 -8.55621 -8.19513 -7.23812 -6.38599 -3.98315 1.78973 2.39769 2.91764 3.15155 3.18054 3.19835 3.35627 3.72106 3.89553 3.97244 3.99110 4.71821 4.75565 4.87808 5.00267 5.12776 5.25942 5.33278 5.44683 5.58255 5.66138 5.83310 6.13748 6.19415 6.63753 6.75073 6.81350 6.94418 6.98368 7.13397 7.29181 7.30426 7.35215 7.47713 7.76729 7.97730 8.15778 8.49547 9.00949 9.13345 9.74324 10.75438 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.005100 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.547041 B = 5489.054654 C = 6866.855553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.403 4.403 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.190 3.810 11 C -0.239 4.239 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.036 4.036 15 C -0.223 4.223 16 C 0.562 3.438 17 O -0.501 6.501 18 N -0.717 5.717 19 C 0.133 3.867 20 H 0.125 0.875 21 C 0.074 3.926 22 O -0.565 6.565 23 C 0.514 3.486 24 N -0.859 5.859 25 O -0.520 6.520 26 H 0.271 0.729 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.401 0.599 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.382 0.618 35 H 0.395 0.605 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -15.594 -2.092 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.479 4.479 8 H 0.110 0.890 9 O -0.023 6.023 10 C 0.131 3.869 11 C -0.258 4.258 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.054 4.054 15 C -0.227 4.227 16 C 0.352 3.648 17 O -0.375 6.375 18 N -0.373 5.373 19 C 0.023 3.977 20 H 0.143 0.857 21 C -0.005 4.005 22 O -0.370 6.370 23 C 0.296 3.704 24 N -0.424 5.424 25 O -0.394 6.394 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.237 0.763 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.223 0.777 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.085 -13.895 -1.440 14.866 hybrid contribution 0.035 -0.127 -0.157 0.205 sum -5.050 -14.021 -1.597 14.988 Atomic orbital electron populations 1.70122 1.05973 1.27706 1.42788 1.25373 0.95792 0.98920 0.96229 0.85800 0.78770 0.79711 0.79229 1.19395 1.20209 1.19379 1.21446 0.91848 0.81175 1.53435 0.88956 1.84174 1.33492 1.10938 1.73655 1.19268 0.89880 0.87375 0.90410 1.21141 0.93338 0.99318 1.11975 1.20892 0.98599 0.92317 0.95120 1.20460 0.94028 0.97120 1.13355 1.20777 0.93865 0.95596 0.95205 1.18763 0.91621 0.92205 1.20144 1.18240 0.88006 0.82550 0.76028 1.90929 1.65708 1.33660 1.47220 1.45484 1.04025 1.09984 1.77819 1.20808 0.84692 0.97301 0.94884 0.85717 1.22406 0.98430 0.87052 0.92606 1.86598 1.81361 1.18970 1.50094 1.21001 0.82361 0.75358 0.91634 1.43806 1.07545 1.77062 1.14015 1.90756 1.55123 1.46629 1.46854 0.91911 0.85082 0.87191 0.87253 0.86981 0.76298 0.91894 0.91465 0.77107 0.77705 0.77107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.75 13.67 55.48 0.76 -24.99 16 2 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 3 Si 0.94 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.40 -11.75 9.49 30.90 0.29 -11.46 16 8 H 0.09 2.44 5.21 -52.48 -0.27 2.16 16 9 O -0.12 -3.80 7.84 -21.06 -0.17 -3.97 16 10 C 0.19 4.95 6.66 -38.60 -0.26 4.70 16 11 C -0.24 -5.35 9.16 -39.44 -0.36 -5.71 16 12 C -0.05 -0.94 10.03 -39.53 -0.40 -1.34 16 13 C -0.23 -4.02 10.03 -39.60 -0.40 -4.42 16 14 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 15 C -0.22 -5.16 5.89 -104.81 -0.62 -5.78 16 16 C 0.56 13.17 7.59 -12.47 -0.09 13.07 16 17 O -0.50 -14.19 14.83 -16.57 -0.25 -14.44 16 18 N -0.72 -12.70 4.54 -55.97 -0.25 -12.96 16 19 C 0.13 1.94 2.79 -69.08 -0.19 1.75 16 20 H 0.13 1.85 7.58 -51.93 -0.39 1.46 16 21 C 0.07 0.64 6.65 37.16 0.25 0.89 16 22 O -0.56 -5.23 12.87 -35.23 -0.45 -5.69 16 23 C 0.51 8.57 6.98 -10.99 -0.08 8.49 16 24 N -0.86 -9.59 8.78 31.22 0.27 -9.32 16 25 O -0.52 -11.63 17.16 5.55 0.10 -11.53 16 26 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.68 6.40 -52.48 -0.34 1.34 16 31 H 0.40 6.17 6.41 -40.82 -0.26 5.90 16 32 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.38 1.53 9.12 45.56 0.42 1.95 16 35 H 0.40 2.82 8.34 -40.82 -0.34 2.48 16 36 H 0.40 4.14 8.93 -40.82 -0.36 3.78 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -41.66 318.74 -5.19 -46.84 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -2.65 Total: 14.90 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.32 Total: 0.33 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.78 Total: -47.27 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.77 Total: -35.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -41.66 -5.19 -46.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323076836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.502 kcal (2) G-P(sol) polarization free energy of solvation -41.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds