Wall clock time and date at job start Tue Mar 31 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00114 * 2 1 4 4 C 1.50703 * 109.47026 * 275.00521 * 3 2 1 5 5 H 1.07997 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00088 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99948 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46660 * 90.00247 * 8 6 4 10 10 H 1.48501 * 109.47108 * 210.00069 * 8 6 4 11 11 H 1.48495 * 109.47167 * 330.00482 * 8 6 4 12 12 S 1.65604 * 120.00044 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40148 * 336.46032 * 12 2 1 14 14 O 1.42102 * 106.39788 * 203.53567 * 12 2 1 15 15 N 1.65602 * 107.21487 * 89.99824 * 12 2 1 16 16 C 1.47019 * 125.65011 * 270.01988 * 15 12 2 17 17 C 1.54322 * 107.27223 * 181.03872 * 16 15 12 18 18 H 1.09002 * 110.72203 * 263.83177 * 17 16 15 19 19 O 1.42900 * 110.71905 * 140.73324 * 17 16 15 20 20 C 1.55154 * 102.94204 * 22.19795 * 17 16 15 21 21 H 1.08999 * 111.00353 * 82.56825 * 20 17 16 22 22 C 1.52999 * 111.00486 * 206.41955 * 20 17 16 23 23 O 1.42900 * 109.47214 * 178.64527 * 22 20 17 24 24 C 1.47426 * 125.64780 * 90.00069 * 15 12 2 25 25 H 1.09005 * 109.46864 * 269.99852 * 1 2 3 26 26 H 1.09000 * 109.47196 * 29.99752 * 1 2 3 27 27 H 1.09000 * 109.47353 * 150.00180 * 1 2 3 28 28 H 1.09006 * 109.46956 * 34.99693 * 3 2 1 29 29 H 1.09000 * 109.47274 * 155.00230 * 3 2 1 30 30 H 0.97000 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.88389 * 300.46373 * 16 15 12 32 32 H 1.09004 * 109.87600 * 61.47331 * 16 15 12 33 33 H 0.96711 * 113.99811 * 61.45858 * 19 17 16 34 34 H 1.08993 * 109.47274 * 298.64896 * 22 20 17 35 35 H 1.09005 * 109.47002 * 58.65139 * 22 20 17 36 36 H 0.96703 * 114.00461 * 179.97438 * 23 22 20 37 37 H 1.08998 * 110.36718 * 274.72894 * 24 15 12 38 38 H 1.09005 * 110.36600 * 37.05455 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9287 1.1935 -2.2332 6 6 2.9996 2.9509 -1.6664 7 7 3.5025 3.6474 -0.6706 8 14 3.1785 3.5666 -3.4209 9 1 2.0176 4.4266 -3.7644 10 1 4.4315 4.3541 -3.5439 11 1 3.2285 2.4086 -4.3492 12 16 2.2930 -1.4342 0.0006 13 8 1.4114 -2.4063 0.5455 14 8 3.5760 -1.1564 0.5449 15 7 2.5380 -1.8593 -1.5810 16 6 1.6300 -2.6763 -2.3992 17 6 2.2807 -2.8313 -3.7899 18 1 1.8859 -2.0905 -4.4852 19 8 2.0831 -4.1530 -4.2961 20 6 3.7825 -2.5686 -3.5021 21 1 4.2717 -3.4678 -3.1277 22 6 4.4949 -2.0375 -4.7476 23 8 5.8655 -1.7775 -4.4380 24 6 3.7026 -1.4809 -2.4019 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6501 2.0043 0.5894 29 1 3.1858 1.1177 0.4343 30 1 3.9653 4.4814 -0.8471 31 1 1.4979 -3.6562 -1.9403 32 1 0.6652 -2.1776 -2.4924 33 1 1.1542 -4.3917 -4.4204 34 1 4.4367 -2.7797 -5.5437 35 1 4.0151 -1.1151 -5.0750 36 1 6.3796 -1.4379 -5.1833 37 1 3.5483 -0.4992 -2.8495 38 1 4.6100 -1.4851 -1.7978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333161947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:45 Heat of formation + Delta-G solvation = -199.747905 kcal Electronic energy + Delta-G solvation = -23596.490707 eV Core-core repulsion = 19985.713400 eV Total energy + Delta-G solvation = -3610.777307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30078 -38.40488 -37.49390 -37.23697 -36.97280 -36.53125 -34.48470 -32.27541 -29.72417 -29.35794 -26.79953 -26.32137 -24.22066 -23.27934 -21.51684 -20.06266 -19.01318 -18.71657 -18.36594 -18.17241 -18.00187 -17.37241 -16.80543 -16.22890 -15.84750 -15.28983 -15.22462 -14.85199 -14.61706 -14.43675 -14.20310 -13.98942 -13.95439 -13.47568 -13.44341 -13.31303 -13.13680 -13.02587 -12.91726 -12.69346 -12.47398 -12.42364 -12.04300 -11.93608 -11.72715 -11.62410 -11.07121 -10.86336 -10.58353 -10.05845 -9.78654 -8.16337 -6.30875 -0.42959 1.43821 1.45117 1.55311 1.90147 2.42807 2.50770 3.01785 3.10431 3.16418 3.24775 3.67623 3.91359 3.99971 4.04893 4.22111 4.33040 4.41866 4.46976 4.62634 4.67766 4.74803 4.78486 4.84258 4.89524 5.02533 5.06845 5.22193 5.24165 5.32960 5.49234 5.73980 5.91508 6.09069 6.80728 6.88283 6.94595 7.39372 8.92235 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.008415 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.343729 B = 3326.548293 C = 4771.289552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.002 6.002 3 C 0.257 3.743 4 C -0.539 4.539 5 H 0.075 0.925 6 C 0.007 3.993 7 N -0.931 5.931 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.252 1.252 12 S 2.813 3.187 13 O -1.000 7.000 14 O -1.014 7.014 15 N -1.015 6.015 16 C 0.084 3.916 17 C 0.119 3.881 18 H 0.100 0.900 19 O -0.564 6.564 20 C -0.090 4.090 21 H 0.086 0.914 22 C 0.090 3.910 23 O -0.594 6.594 24 C 0.130 3.870 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.021 0.979 29 H 0.014 0.986 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 -11.552 -11.765 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.843 5.843 3 C 0.133 3.867 4 C -0.578 4.578 5 H 0.093 0.907 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.176 1.176 12 S 2.823 3.177 13 O -0.984 6.984 14 O -0.998 6.998 15 N -0.856 5.856 16 C -0.042 4.042 17 C 0.058 3.942 18 H 0.118 0.882 19 O -0.373 6.373 20 C -0.111 4.111 21 H 0.104 0.896 22 C 0.012 3.988 23 O -0.403 6.403 24 C 0.005 3.995 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.448 -12.085 -10.234 16.449 hybrid contribution -0.160 1.266 -0.978 1.608 sum -4.609 -10.819 -11.212 16.248 Atomic orbital electron populations 1.21484 0.77785 1.03482 1.01980 1.57610 1.15797 1.22033 1.88873 1.18800 0.90705 0.80060 0.97131 1.21792 1.36008 1.06701 0.93286 0.90688 1.25890 0.94862 0.96893 1.01530 1.70080 1.37897 1.15670 1.33438 0.85500 0.77342 0.78841 0.79717 1.19938 1.21567 1.17600 1.00731 0.72092 0.72320 0.72581 1.93513 1.67282 1.60324 1.77250 1.93521 1.43029 1.85747 1.77517 1.58755 1.31249 1.65559 1.30018 1.22684 0.93464 0.95759 0.92263 1.22612 0.93260 0.85753 0.92571 0.88230 1.86497 1.33589 1.30565 1.86640 1.22327 0.95392 0.98218 0.95119 0.89607 1.22094 0.81883 0.99726 0.95057 1.86469 1.22295 1.88539 1.42948 1.21973 0.87193 0.98300 0.92032 0.92622 0.90454 0.90273 0.96078 0.96748 0.92612 0.90225 0.89319 0.74642 0.90820 0.92385 0.75152 0.91042 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.21 10.31 127.77 1.32 4.53 16 2 N -1.00 -41.96 3.23 -543.20 -1.75 -43.71 16 3 C 0.26 13.17 5.41 85.63 0.46 13.63 16 4 C -0.54 -27.77 9.38 25.60 0.24 -27.53 16 5 H 0.08 3.59 7.81 -2.91 -0.02 3.56 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 8 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 12 S 2.81 116.73 6.31 -56.49 -0.36 116.38 16 13 O -1.00 -41.10 16.79 -128.00 -2.15 -43.25 16 14 O -1.01 -50.84 16.01 -128.00 -2.05 -52.89 16 15 N -1.01 -34.74 3.76 -506.42 -1.90 -36.64 16 16 C 0.08 2.06 6.76 86.73 0.59 2.65 16 17 C 0.12 2.43 3.79 31.78 0.12 2.55 16 18 H 0.10 1.66 8.04 -2.39 -0.02 1.64 16 19 O -0.56 -9.72 13.40 -148.98 -2.00 -11.71 16 20 C -0.09 -2.38 3.06 -9.40 -0.03 -2.40 16 21 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 22 C 0.09 1.98 6.49 71.98 0.47 2.45 16 23 O -0.59 -14.63 13.51 -148.98 -2.01 -16.64 16 24 C 0.13 4.50 6.44 86.86 0.56 5.06 16 25 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.08 2.47 8.07 -2.39 -0.02 2.46 16 27 H 0.08 2.13 7.79 -2.39 -0.02 2.11 16 28 H 0.02 1.14 8.11 -2.38 -0.02 1.12 16 29 H 0.01 0.84 6.91 -2.39 -0.02 0.83 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.40 3.01 9.11 -74.05 -0.67 2.34 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.40 5.79 9.12 -74.05 -0.68 5.11 16 37 H 0.07 2.61 8.00 -2.39 -0.02 2.59 16 38 H 0.06 2.40 7.78 -2.38 -0.02 2.38 16 Total: -1.00 -74.88 332.04 -5.99 -80.87 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.27 Total: 16.78 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.19 Total: 1.79 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -3.37 Total: -134.19 kcal Atomic # 8 Polarization: -116.28 SS G_CDS: -8.21 Total: -124.49 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 116.73 SS G_CDS: -0.36 Total: 116.38 kcal Total: -74.88 -5.99 -80.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333161947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.875 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds