Wall clock time and date at job start Tue Mar 31 2020 04:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99549 * 2 1 4 4 C 1.50696 * 109.46871 * 274.99724 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 S 1.65600 * 120.00499 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40014 * 23.53705 * 12 2 1 14 14 O 1.42094 * 106.40316 * 156.45730 * 12 2 1 15 15 N 1.65603 * 107.21636 * 270.00218 * 12 2 1 16 16 C 1.46497 * 120.00317 * 64.99895 * 15 12 2 17 17 C 1.52997 * 109.47229 * 164.99786 * 16 15 12 18 18 O 1.42900 * 110.45715 * 300.70411 * 17 16 15 19 19 C 1.54503 * 110.51156 * 178.09271 * 17 16 15 20 20 C 1.54476 * 104.06540 * 241.35600 * 19 17 16 21 21 O 1.44426 * 104.80693 * 336.02314 * 20 19 17 22 22 C 1.44643 * 105.36576 * 40.43001 * 21 20 19 23 23 H 1.09001 * 109.47223 * 90.00610 * 1 2 3 24 24 H 1.09005 * 109.46822 * 210.00043 * 1 2 3 25 25 H 1.08997 * 109.47514 * 329.99866 * 1 2 3 26 26 H 1.09005 * 109.46943 * 155.00044 * 3 2 1 27 27 H 1.09002 * 109.47064 * 35.00307 * 3 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99200 * 244.99446 * 15 12 2 30 30 H 1.09005 * 109.46697 * 284.99881 * 16 15 12 31 31 H 1.09001 * 109.46785 * 44.99765 * 16 15 12 32 32 H 0.96692 * 114.00214 * 59.29795 * 18 17 16 33 33 H 1.09005 * 110.51333 * 0.02562 * 19 17 16 34 34 H 1.09005 * 110.50969 * 122.71317 * 19 17 16 35 35 H 1.09003 * 110.37521 * 94.85280 * 20 19 17 36 36 H 1.09008 * 110.37460 * 217.08090 * 20 19 17 37 37 H 1.08999 * 110.51172 * 200.81592 * 22 21 20 38 38 H 1.09007 * 110.33941 * 78.41200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.1257 3.3844 -2.9016 8 14 3.7157 3.9392 -0.2521 9 1 2.6978 4.8991 0.2455 10 1 4.1077 3.0197 0.8462 11 1 4.9103 4.6847 -0.7237 12 16 2.2931 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5759 -1.1564 -0.5450 15 7 2.5382 -1.8593 1.5810 16 6 1.3948 -2.1789 2.4392 17 6 1.8877 -2.8865 3.7030 18 8 2.5816 -4.0888 3.3638 19 6 0.7047 -3.1925 4.6485 20 6 1.0378 -2.4035 5.9341 21 8 2.4727 -2.2412 5.9062 22 6 2.7987 -1.9500 4.5274 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 3.1857 1.1178 0.4343 27 1 1.6500 2.0043 0.5895 28 1 3.5891 4.2181 -3.0781 29 1 3.4389 -1.8967 1.9391 30 1 0.8795 -1.2589 2.7154 31 1 0.7082 -2.8325 1.9012 32 1 3.3516 -3.9514 2.7952 33 1 -0.2315 -2.8401 4.2154 34 1 0.6506 -4.2606 4.8592 35 1 0.5457 -1.4310 5.9208 36 1 0.7353 -2.9690 6.8156 37 1 3.8477 -2.1694 4.3285 38 1 2.5780 -0.9075 4.2979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341113345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:12 Heat of formation + Delta-G solvation = -161.297283 kcal Electronic energy + Delta-G solvation = -23087.715196 eV Core-core repulsion = 19478.605233 eV Total energy + Delta-G solvation = -3609.109963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30652 -36.96360 -36.69727 -35.73945 -35.33004 -34.49948 -32.43769 -31.67598 -29.08504 -28.47986 -25.76871 -25.23454 -23.19792 -22.01781 -20.87638 -19.22082 -17.86603 -17.34731 -17.06762 -16.88197 -16.58063 -16.17262 -15.57326 -15.48995 -14.87469 -14.38056 -14.27245 -13.76952 -13.49365 -13.22492 -13.05166 -12.75807 -12.68808 -12.47191 -12.08952 -11.95285 -11.87812 -11.80440 -11.59453 -11.41131 -11.35857 -11.03209 -10.68686 -10.60622 -10.51249 -10.27392 -9.90893 -9.69218 -9.57739 -8.64413 -8.22794 -6.12665 -4.12441 0.99388 3.21201 3.23861 3.28736 3.32655 3.52757 3.74565 3.91131 4.16938 4.28725 4.33404 4.42629 4.73871 4.81401 4.86920 5.09773 5.16431 5.21340 5.28592 5.33060 5.35453 5.41271 5.48738 5.59709 5.74841 5.86865 6.13769 6.33515 6.35705 6.59993 6.78139 6.99133 7.27627 7.31008 7.52096 8.43784 8.92100 9.45826 11.00952 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.004966 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.230801 B = 5637.283256 C = 6258.990918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.991 5.991 3 C 0.228 3.772 4 C -0.534 4.534 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.265 1.265 11 H -0.283 1.283 12 S 2.784 3.216 13 O -0.988 6.988 14 O -0.958 6.958 15 N -1.138 6.138 16 C 0.099 3.901 17 C 0.097 3.903 18 O -0.544 6.544 19 C -0.143 4.143 20 C 0.045 3.955 21 O -0.369 6.369 22 C 0.019 3.981 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.380 0.620 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -10.413 17.203 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.833 5.833 3 C 0.104 3.896 4 C -0.573 4.573 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.208 1.208 12 S 2.791 3.209 13 O -0.971 6.971 14 O -0.942 6.942 15 N -0.897 5.897 16 C -0.028 4.028 17 C 0.054 3.946 18 O -0.350 6.350 19 C -0.181 4.181 20 C -0.032 4.032 21 O -0.288 6.288 22 C -0.059 4.059 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.228 0.772 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.463 -11.022 16.796 20.819 hybrid contribution 0.958 1.237 0.481 1.637 sum -4.504 -9.785 17.277 20.360 Atomic orbital electron populations 1.21283 0.79592 1.01079 1.02157 1.57411 1.14448 1.22658 1.88805 1.19471 0.90918 0.80516 0.98648 1.21364 1.36898 1.07150 0.91855 0.90429 1.24882 0.95341 0.97205 0.95561 1.69895 1.42467 1.21930 1.18897 0.86893 0.79372 0.80642 0.82995 1.20058 1.18984 1.20818 1.01991 0.73474 0.72828 0.72596 1.93561 1.67480 1.59840 1.76241 1.93662 1.40603 1.84733 1.75161 1.56388 1.14108 1.86423 1.32816 1.21934 0.88982 1.00173 0.91739 1.22747 0.92927 0.85567 0.93364 1.86573 1.46190 1.30292 1.71940 1.22956 0.97009 1.03379 0.94771 1.23462 0.82166 0.99410 0.98196 1.89185 1.21798 1.91937 1.25837 1.24241 1.00517 0.99013 0.82098 0.92549 0.92861 0.91366 0.94857 0.95299 0.92466 0.75784 0.90552 0.89074 0.77182 0.88915 0.88782 0.91755 0.88620 0.88401 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.63 10.33 59.85 0.62 2.24 16 2 N -0.99 -18.67 3.23 -123.05 -0.40 -19.07 16 3 C 0.23 5.11 4.19 -5.19 -0.02 5.08 16 4 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 8 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 S 2.78 50.00 6.05 -107.50 -0.65 49.35 16 13 O -0.99 -19.32 16.68 -57.17 -0.95 -20.28 16 14 O -0.96 -21.32 17.11 -57.17 -0.98 -22.30 16 15 N -1.14 -13.81 5.55 -10.61 -0.06 -13.87 16 16 C 0.10 1.00 5.12 -4.04 -0.02 0.98 16 17 C 0.10 0.90 1.15 -89.05 -0.10 0.80 16 18 O -0.54 -5.68 12.99 -35.23 -0.46 -6.14 16 19 C -0.14 -1.12 6.54 -25.17 -0.16 -1.28 16 20 C 0.04 0.35 7.64 37.93 0.29 0.64 16 21 O -0.37 -4.04 11.65 -35.23 -0.41 -4.45 16 22 C 0.02 0.18 6.27 37.94 0.24 0.41 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 25 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 26 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 27 H 0.03 0.60 7.39 -51.93 -0.38 0.22 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.41 4.09 7.70 -34.47 -0.27 3.83 16 30 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 31 H 0.09 0.96 7.75 -51.93 -0.40 0.56 16 32 H 0.38 3.04 8.24 45.56 0.38 3.42 16 33 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 34 H 0.09 0.77 8.00 -51.93 -0.42 0.36 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.08 0.67 7.85 -51.93 -0.41 0.27 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -36.61 326.16 -7.25 -43.86 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.76 Total: 2.82 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 0.40 Total: -4.39 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.32 Total: -59.35 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.80 Total: -53.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 50.00 SS G_CDS: -0.65 Total: 49.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.61 -7.25 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341113345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.437 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds