Wall clock time and date at job start Tue Mar 31 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99549 * 2 1 4 4 C 1.50696 * 109.46871 * 274.99724 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 S 1.65600 * 120.00499 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40014 * 23.53705 * 12 2 1 14 14 O 1.42094 * 106.40316 * 156.45730 * 12 2 1 15 15 N 1.65603 * 107.21636 * 270.00218 * 12 2 1 16 16 C 1.46497 * 120.00317 * 64.99895 * 15 12 2 17 17 C 1.52997 * 109.47229 * 164.99786 * 16 15 12 18 18 O 1.42900 * 110.45715 * 300.70411 * 17 16 15 19 19 C 1.54503 * 110.51156 * 178.09271 * 17 16 15 20 20 C 1.54476 * 104.06540 * 241.35600 * 19 17 16 21 21 O 1.44426 * 104.80693 * 336.02314 * 20 19 17 22 22 C 1.44643 * 105.36576 * 40.43001 * 21 20 19 23 23 H 1.09001 * 109.47223 * 90.00610 * 1 2 3 24 24 H 1.09005 * 109.46822 * 210.00043 * 1 2 3 25 25 H 1.08997 * 109.47514 * 329.99866 * 1 2 3 26 26 H 1.09005 * 109.46943 * 155.00044 * 3 2 1 27 27 H 1.09002 * 109.47064 * 35.00307 * 3 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99200 * 244.99446 * 15 12 2 30 30 H 1.09005 * 109.46697 * 284.99881 * 16 15 12 31 31 H 1.09001 * 109.46785 * 44.99765 * 16 15 12 32 32 H 0.96692 * 114.00214 * 59.29795 * 18 17 16 33 33 H 1.09005 * 110.51333 * 0.02562 * 19 17 16 34 34 H 1.09005 * 110.50969 * 122.71317 * 19 17 16 35 35 H 1.09003 * 110.37521 * 94.85280 * 20 19 17 36 36 H 1.09008 * 110.37460 * 217.08090 * 20 19 17 37 37 H 1.08999 * 110.51172 * 200.81592 * 22 21 20 38 38 H 1.09007 * 110.33941 * 78.41200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.1257 3.3844 -2.9016 8 14 3.7157 3.9392 -0.2521 9 1 2.6978 4.8991 0.2455 10 1 4.1077 3.0197 0.8462 11 1 4.9103 4.6847 -0.7237 12 16 2.2931 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5759 -1.1564 -0.5450 15 7 2.5382 -1.8593 1.5810 16 6 1.3948 -2.1789 2.4392 17 6 1.8877 -2.8865 3.7030 18 8 2.5816 -4.0888 3.3638 19 6 0.7047 -3.1925 4.6485 20 6 1.0378 -2.4035 5.9341 21 8 2.4727 -2.2412 5.9062 22 6 2.7987 -1.9500 4.5274 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 3.1857 1.1178 0.4343 27 1 1.6500 2.0043 0.5895 28 1 3.5891 4.2181 -3.0781 29 1 3.4389 -1.8967 1.9391 30 1 0.8795 -1.2589 2.7154 31 1 0.7082 -2.8325 1.9012 32 1 3.3516 -3.9514 2.7952 33 1 -0.2315 -2.8401 4.2154 34 1 0.6506 -4.2606 4.8592 35 1 0.5457 -1.4310 5.9208 36 1 0.7353 -2.9690 6.8156 37 1 3.8477 -2.1694 4.3285 38 1 2.5780 -0.9075 4.2979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341113345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:11 Heat of formation + Delta-G solvation = -195.381735 kcal Electronic energy + Delta-G solvation = -23089.193209 eV Core-core repulsion = 19478.605233 eV Total energy + Delta-G solvation = -3610.587976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99808 -38.35109 -37.63500 -37.29695 -36.89473 -35.43741 -34.49870 -32.37553 -30.27859 -29.77691 -26.86190 -26.48186 -23.86707 -23.81356 -21.58641 -20.49559 -19.20695 -18.85473 -18.53432 -18.07371 -17.52634 -17.04604 -16.93638 -16.24015 -16.19311 -15.77732 -15.28346 -15.09559 -14.63322 -14.40564 -14.20701 -14.15751 -13.93175 -13.49667 -13.40066 -13.23868 -13.16277 -13.12695 -13.00308 -12.69962 -12.39804 -12.33245 -12.22642 -12.00896 -11.74525 -11.71032 -11.24036 -10.77093 -10.63777 -10.58589 -9.81292 -8.28006 -6.34208 -0.41747 1.37639 1.42518 1.51380 1.97580 2.36562 2.58651 2.89725 3.05985 3.10827 3.37020 3.42977 3.68953 3.76405 3.95937 4.13582 4.26164 4.41998 4.52683 4.59949 4.64196 4.67409 4.75566 4.77057 4.83860 4.84440 4.97374 5.07460 5.09682 5.32434 5.49432 5.67372 5.74537 5.98765 6.31173 6.64743 6.69417 7.28973 8.89869 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.004966 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.230801 B = 5637.283256 C = 6258.990918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.998 5.998 3 C 0.233 3.767 4 C -0.545 4.545 5 H 0.024 0.976 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.948 3.052 9 H -0.254 1.254 10 H -0.236 1.236 11 H -0.287 1.287 12 S 2.802 3.198 13 O -1.008 7.008 14 O -1.008 7.008 15 N -1.118 6.118 16 C 0.093 3.907 17 C 0.098 3.902 18 O -0.560 6.560 19 C -0.143 4.143 20 C 0.040 3.960 21 O -0.396 6.396 22 C 0.015 3.985 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.267 0.733 29 H 0.422 0.578 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.387 0.613 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 -10.116 20.552 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.839 5.839 3 C 0.109 3.891 4 C -0.585 4.585 5 H 0.043 0.957 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.159 1.159 11 H -0.213 1.213 12 S 2.809 3.191 13 O -0.991 6.991 14 O -0.992 6.992 15 N -0.882 5.882 16 C -0.033 4.033 17 C 0.055 3.945 18 O -0.368 6.368 19 C -0.181 4.181 20 C -0.036 4.036 21 O -0.315 6.315 22 C -0.062 4.062 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.237 0.763 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.163 -10.756 20.154 23.662 hybrid contribution 1.094 1.020 -0.600 1.612 sum -5.069 -9.735 19.554 22.424 Atomic orbital electron populations 1.21552 0.77707 1.04068 1.01705 1.57330 1.15811 1.21506 1.89268 1.19275 0.92229 0.82427 0.95211 1.21743 1.36256 1.06822 0.93635 0.95717 1.25988 0.95787 0.98706 0.98810 1.70087 1.44174 1.22864 1.21989 0.85729 0.78570 0.79270 0.79515 1.17796 1.15903 1.21330 1.01176 0.72051 0.72410 0.73443 1.93530 1.67787 1.60268 1.77556 1.93591 1.42977 1.85352 1.77273 1.55767 1.15733 1.85626 1.31074 1.22225 0.88096 1.01528 0.91453 1.22813 0.93471 0.85153 0.93033 1.86563 1.46746 1.31231 1.72254 1.23026 0.97344 1.03154 0.94547 1.23669 0.80835 1.00497 0.98636 1.89158 1.23660 1.92136 1.26555 1.24330 1.00833 0.99416 0.81654 0.94870 0.89249 0.89014 0.94273 0.92323 0.92407 0.74209 0.88012 0.89291 0.76314 0.86693 0.89454 0.90108 0.87567 0.88080 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 10.33 127.77 1.32 4.06 16 2 N -1.00 -36.09 3.23 -543.21 -1.75 -37.84 16 3 C 0.23 10.03 4.19 85.63 0.36 10.39 16 4 C -0.55 -30.99 9.94 25.60 0.25 -30.74 16 5 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 6 C 0.00 0.26 5.47 84.66 0.46 0.73 16 7 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 8 Si 0.95 41.44 27.47 68.60 1.88 43.33 16 9 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 10 H -0.24 -9.15 6.54 99.48 0.65 -8.49 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 S 2.80 98.01 6.05 -56.49 -0.34 97.66 16 13 O -1.01 -38.75 16.68 -128.00 -2.14 -40.88 16 14 O -1.01 -45.18 17.11 -128.00 -2.19 -47.37 16 15 N -1.12 -24.41 5.55 -187.49 -1.04 -25.46 16 16 C 0.09 1.56 5.12 86.38 0.44 2.00 16 17 C 0.10 1.55 1.15 -9.78 -0.01 1.54 16 18 O -0.56 -10.62 12.99 -148.98 -1.94 -12.56 16 19 C -0.14 -1.79 6.54 31.61 0.21 -1.58 16 20 C 0.04 0.50 7.64 72.48 0.55 1.05 16 21 O -0.40 -7.71 11.65 -148.98 -1.74 -9.44 16 22 C 0.01 0.24 6.27 72.49 0.45 0.69 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 1.90 7.79 -2.38 -0.02 1.88 16 25 H 0.09 2.20 7.94 -2.39 -0.02 2.18 16 26 H 0.04 1.66 6.66 -2.38 -0.02 1.64 16 27 H 0.06 2.21 7.39 -2.39 -0.02 2.19 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.42 7.44 7.70 -96.75 -0.74 6.70 16 30 H 0.10 1.26 8.12 -2.38 -0.02 1.24 16 31 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 32 H 0.39 5.57 8.24 -74.06 -0.61 4.96 16 33 H 0.11 0.90 7.73 -2.38 -0.02 0.88 16 34 H 0.09 1.23 8.00 -2.38 -0.02 1.21 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.08 1.19 7.85 -2.38 -0.02 1.18 16 Total: -1.00 -82.28 326.16 -5.23 -87.52 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.33 Total: 16.33 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.04 Total: -11.86 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -2.49 Total: -122.72 kcal Atomic # 8 Polarization: -102.26 SS G_CDS: -8.00 Total: -110.25 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Atomic # 16 Polarization: 98.01 SS G_CDS: -0.34 Total: 97.66 kcal Total: -82.28 -5.23 -87.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341113345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.863 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds