Wall clock time and date at job start Tue Mar 31 2020 03:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46868 * 264.99156 * 3 2 1 5 5 H 1.48491 * 109.46925 * 24.99058 * 3 2 1 6 6 H 1.48493 * 109.47182 * 144.99106 * 3 2 1 7 7 C 1.37882 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99871 * 190.18998 * 7 2 1 9 9 C 1.50699 * 120.00054 * 10.19371 * 7 2 1 10 10 O 1.42905 * 113.27902 * 52.41106 * 9 7 2 11 11 C 1.53492 * 114.20822 * 185.47231 * 9 7 2 12 12 N 1.47068 * 87.98367 * 139.65278 * 11 9 7 13 13 C 1.34782 * 136.05400 * 152.84288 * 12 11 9 14 14 O 1.21615 * 120.00152 * 0.02562 * 13 12 11 15 15 C 1.47377 * 119.99877 * 180.02562 * 13 12 11 16 16 C 1.47026 * 127.19001 * 359.67768 * 15 13 12 17 17 C 1.34176 * 105.94964 * 179.89342 * 16 15 13 18 18 O 1.34217 * 109.12749 * 0.38468 * 17 16 15 19 19 C 1.33646 * 110.90556 * 359.73900 * 18 17 16 20 20 C 1.50704 * 125.80098 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47192 * 270.00637 * 20 19 18 22 22 N 1.34783 * 119.99681 * 179.97438 * 21 20 19 23 23 O 1.21282 * 120.00025 * 359.97438 * 21 20 19 24 24 C 1.47065 * 87.88784 * 333.10312 * 12 11 9 25 25 H 0.97003 * 119.99469 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99926 * 317.06793 * 10 9 7 27 27 H 1.09005 * 113.46652 * 24.87928 * 11 9 7 28 28 H 1.09001 * 113.52642 * 254.44339 * 11 9 7 29 29 H 1.07992 * 127.02639 * 0.02562 * 16 15 13 30 30 H 1.08000 * 125.43555 * 180.12341 * 17 16 15 31 31 H 1.09002 * 109.46770 * 30.00854 * 20 19 18 32 32 H 1.08997 * 109.47248 * 150.00081 * 20 19 18 33 33 H 0.96998 * 120.00185 * 359.97438 * 22 21 20 34 34 H 0.97003 * 119.99482 * 180.02562 * 22 21 20 35 35 H 1.09000 * 113.46573 * 141.67204 * 24 12 11 36 36 H 1.08995 * 113.46863 * 272.11994 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9852 -1.3948 5 1 1.3978 2.6809 0.5915 6 1 3.4898 1.4730 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0718 -1.2014 0.1660 9 6 1.2688 -2.4890 -0.2299 10 8 0.4646 -2.4792 -1.4111 11 6 2.1384 -3.7438 -0.0710 12 7 1.0011 -4.3828 0.6080 13 6 0.5577 -5.6438 0.7805 14 8 1.1721 -6.5758 0.2979 15 6 -0.6717 -5.8933 1.5540 16 6 -1.5287 -4.8933 2.2078 17 6 -2.5253 -5.5823 2.7844 18 8 -2.3478 -6.8918 2.5499 19 6 -1.2491 -7.1007 1.8182 20 6 -0.7354 -8.4420 1.3621 21 6 0.2064 -8.9983 2.3987 22 7 0.7912 -10.1969 2.2038 23 8 0.4382 -8.3673 3.4082 24 6 0.5569 -3.0398 1.0103 25 1 -0.4849 0.8401 -0.0004 26 1 -0.0356 -1.6616 -1.5396 27 1 3.0023 -3.5942 0.5767 28 1 2.3990 -4.2154 -1.0186 29 1 -1.3864 -3.8229 2.2194 30 1 -3.3380 -5.1521 3.3508 31 1 -1.5738 -9.1258 1.2286 32 1 -0.2070 -8.3262 0.4158 33 1 0.6055 -10.7016 1.3966 34 1 1.3972 -10.5550 2.8712 35 1 -0.5253 -2.9132 0.9797 36 1 0.9952 -2.7006 1.9489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447921459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:55 Heat of formation + Delta-G solvation = -65.537085 kcal Electronic energy + Delta-G solvation = -23744.459283 eV Core-core repulsion = 20004.057843 eV Total energy + Delta-G solvation = -3740.401440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36955 -39.44877 -39.31214 -37.27844 -34.04548 -33.76368 -32.74213 -32.30272 -31.89374 -28.85535 -27.25684 -25.43590 -25.14717 -22.68594 -21.43757 -20.59779 -19.67194 -18.49447 -17.67558 -17.36761 -16.98953 -16.63524 -15.74397 -15.66524 -15.37396 -15.15155 -14.83803 -14.44151 -14.22864 -13.84507 -13.56573 -13.16361 -12.86944 -12.66901 -12.46158 -12.19977 -11.98860 -11.75107 -11.62459 -11.05675 -10.89257 -10.50245 -10.26255 -10.11180 -9.78310 -9.64565 -9.50405 -9.11581 -8.89628 -8.47155 -8.32785 -7.79296 -6.40279 -4.49149 1.57573 2.36556 2.61338 2.88113 3.16069 3.23853 3.26125 3.51571 3.63252 3.93315 4.19924 4.53033 4.81907 4.88543 4.97671 5.06974 5.18802 5.43528 5.51529 5.75585 5.85771 5.97387 6.13157 6.22669 6.41785 6.51622 6.58750 6.66867 6.70065 6.78432 7.08549 7.19197 7.23477 7.61261 7.78561 8.18819 8.51717 8.55245 8.81692 9.21640 9.25488 10.66050 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.004050 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.562883 B = 6912.750655 C = 7423.885931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.238 3.762 10 O -0.566 6.566 11 C 0.110 3.890 12 N -0.626 5.626 13 C 0.609 3.391 14 O -0.571 6.571 15 C -0.202 4.202 16 C -0.182 4.182 17 C -0.042 4.042 18 O -0.175 6.175 19 C 0.071 3.929 20 C -0.066 4.066 21 C 0.529 3.471 22 N -0.855 5.855 23 O -0.533 6.533 24 C 0.079 3.921 25 H 0.271 0.729 26 H 0.386 0.614 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.208 0.792 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.402 0.598 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -13.173 3.177 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.197 3.803 10 O -0.374 6.374 11 C -0.012 4.012 12 N -0.357 5.357 13 C 0.401 3.599 14 O -0.454 6.454 15 C -0.206 4.206 16 C -0.201 4.201 17 C -0.107 4.107 18 O -0.071 6.071 19 C 0.017 3.983 20 C -0.105 4.105 21 C 0.313 3.687 22 N -0.419 5.419 23 O -0.408 6.408 24 C -0.043 4.043 25 H 0.081 0.919 26 H 0.237 0.763 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.182 0.818 30 H 0.224 0.776 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.230 0.770 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.468 -13.982 3.588 15.111 hybrid contribution 0.297 1.366 0.115 1.403 sum -4.171 -12.616 3.704 13.795 Atomic orbital electron populations 1.69766 1.06035 1.28101 1.48838 1.25072 0.95012 0.99782 0.93117 0.86416 0.79832 0.82063 0.78645 1.20139 1.21059 1.19611 1.21351 0.95326 0.90097 1.51056 0.90915 1.19489 0.87309 0.91255 0.82267 1.86091 1.63518 1.44298 1.43520 1.23317 0.90370 0.91420 0.96096 1.49489 1.28484 1.04807 1.52957 1.16617 0.83087 0.81085 0.79151 1.90637 1.59661 1.42234 1.52849 1.21145 0.99550 0.92855 1.07089 1.23260 0.95167 1.00939 1.00746 1.23815 1.02453 0.79457 1.05007 1.83660 1.39075 1.27942 1.56413 1.21505 0.86906 0.95043 0.94821 1.20257 0.99198 0.90664 1.00423 1.20235 0.80624 0.80828 0.86991 1.43713 1.50556 1.21438 1.26209 1.90783 1.62300 1.58456 1.29292 1.24162 1.00916 0.77418 1.01853 0.91877 0.76265 0.89567 0.91499 0.81833 0.77567 0.87093 0.83931 0.77006 0.76719 0.91165 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.14 11.81 55.43 0.65 -21.49 16 2 C 0.07 1.82 5.21 -17.82 -0.09 1.72 16 3 Si 0.90 19.26 29.55 -169.99 -5.02 14.24 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -13.45 8.65 -34.44 -0.30 -13.75 16 8 H 0.07 1.77 7.84 -52.48 -0.41 1.36 16 9 C 0.24 5.72 1.40 -91.39 -0.13 5.60 16 10 O -0.57 -14.26 13.56 -35.23 -0.48 -14.74 16 11 C 0.11 2.46 8.04 -8.50 -0.07 2.40 16 12 N -0.63 -14.07 3.69 -186.66 -0.69 -14.76 16 13 C 0.61 13.54 8.06 -12.54 -0.10 13.43 16 14 O -0.57 -13.16 15.62 5.26 0.08 -13.08 16 15 C -0.20 -3.93 6.31 -103.28 -0.65 -4.58 16 16 C -0.18 -3.12 10.14 -37.45 -0.38 -3.50 16 17 C -0.04 -0.59 12.03 29.30 0.35 -0.24 16 18 O -0.17 -2.70 10.52 7.66 0.08 -2.62 16 19 C 0.07 1.19 5.87 -34.96 -0.21 0.98 16 20 C -0.07 -0.86 5.71 -29.03 -0.17 -1.03 16 21 C 0.53 7.50 8.09 -10.98 -0.09 7.42 16 22 N -0.85 -7.71 8.87 31.22 0.28 -7.43 16 23 O -0.53 -10.21 16.87 5.56 0.09 -10.12 16 24 C 0.08 1.76 6.60 -8.63 -0.06 1.71 16 25 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 26 H 0.39 9.67 7.09 45.56 0.32 9.99 16 27 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.16 2.77 5.58 -52.49 -0.29 2.48 16 30 H 0.21 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.14 1.93 6.49 -51.93 -0.34 1.59 16 33 H 0.40 2.18 8.83 -40.82 -0.36 1.82 16 34 H 0.40 3.20 8.93 -40.82 -0.36 2.83 16 35 H 0.07 1.56 6.21 -51.93 -0.32 1.23 16 36 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -33.19 317.72 -5.11 -38.30 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -3.01 Total: 16.76 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -1.88 Total: 10.15 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.24 Total: -43.68 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.22 Total: -40.56 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.19 -5.11 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447921459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.239 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds