Wall clock time and date at job start Tue Mar 31 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34599 * 119.48084 * 2 1 4 4 C 1.38076 * 120.44632 * 180.30669 * 3 2 1 5 5 C 1.47368 * 120.26749 * 179.68513 * 4 3 2 6 6 O 1.21636 * 119.99710 * 324.89106 * 5 4 3 7 7 N 1.34775 * 120.00125 * 145.16071 * 5 4 3 8 8 C 1.36935 * 119.99836 * 5.65915 * 7 5 4 9 9 H 1.07997 * 120.00534 * 323.48658 * 8 7 5 10 10 C 1.39002 * 119.99792 * 143.48817 * 8 7 5 11 11 N 1.31394 * 120.00104 * 157.34478 * 10 8 7 12 12 Si 1.86799 * 119.99668 * 337.34179 * 10 8 7 13 13 H 1.48505 * 109.46961 * 95.34792 * 12 10 8 14 14 H 1.48497 * 109.47088 * 215.34326 * 12 10 8 15 15 H 1.48498 * 109.47426 * 335.34641 * 12 10 8 16 16 C 1.46503 * 119.99984 * 185.66142 * 7 5 4 17 17 C 1.52999 * 109.46815 * 89.99900 * 16 7 5 18 18 C 1.50707 * 109.46617 * 179.97438 * 17 16 7 19 19 O 1.20819 * 120.00380 * 0.02562 * 18 17 16 20 20 O 1.34236 * 119.99830 * 180.02562 * 18 17 16 21 21 C 1.41630 * 119.47519 * 359.41929 * 4 3 2 22 22 C 1.35964 * 119.00425 * 0.27069 * 21 4 3 23 23 C 1.34541 * 119.47241 * 179.69321 * 2 1 3 24 24 O 1.21966 * 119.74251 * 0.02562 * 23 2 1 25 25 H 1.08994 * 109.47873 * 180.30660 * 1 2 3 26 26 H 1.09010 * 109.46896 * 300.30617 * 1 2 3 27 27 H 1.09004 * 109.47361 * 60.29741 * 1 2 3 28 28 H 1.07999 * 119.77804 * 0.02562 * 3 2 1 29 29 H 0.97003 * 120.00170 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.46603 * 210.00091 * 16 7 5 31 31 H 1.08998 * 109.47143 * 330.00213 * 16 7 5 32 32 H 1.08991 * 109.47740 * 299.99687 * 17 16 7 33 33 H 1.09004 * 109.47412 * 60.00200 * 17 16 7 34 34 H 0.96698 * 117.00166 * 180.02562 * 20 18 17 35 35 H 1.07998 * 120.49867 * 180.30077 * 21 4 3 36 36 H 1.08004 * 120.24257 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5079 1.1950 -0.0064 5 6 4.2291 2.4801 -0.0133 6 8 3.7725 3.4304 -0.6198 7 7 5.3974 2.6009 0.6478 8 6 5.9724 1.5019 1.2281 9 1 5.3517 0.7462 1.6863 10 6 7.3550 1.3591 1.2275 11 7 7.9369 0.5942 2.1235 12 14 8.3859 2.2545 -0.0473 13 1 8.8805 3.5324 0.5250 14 1 9.5411 1.4056 -0.4347 15 1 7.5555 2.5372 -1.2455 16 6 6.0520 3.9078 0.7455 17 6 5.5609 4.6315 2.0009 18 6 6.2349 5.9757 2.1017 19 8 7.0263 6.3197 1.2561 20 8 5.9559 6.7909 3.1311 21 6 4.2255 -0.0260 -0.0004 22 6 3.5344 -1.1969 0.0058 23 6 2.1269 -1.1713 0.0063 24 8 1.5027 -2.2191 0.0114 25 1 -0.3634 -1.0275 0.0055 26 1 -0.3633 0.5186 0.8873 27 1 -0.3634 0.5092 -0.8927 28 1 1.5753 2.0999 0.0004 29 1 8.9018 0.4942 2.1229 30 1 7.1317 3.7698 0.8045 31 1 5.8093 4.5025 -0.1351 32 1 4.4814 4.7695 1.9419 33 1 5.8037 4.0368 2.8816 34 1 6.4126 7.6429 3.1527 35 1 5.3055 -0.0271 -0.0004 36 1 4.0614 -2.1396 0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600929400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:02 Heat of formation + Delta-G solvation = -127.312564 kcal Electronic energy + Delta-G solvation = -23803.329622 eV Core-core repulsion = 20060.249395 eV Total energy + Delta-G solvation = -3743.080226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43262 -41.40103 -40.55655 -37.89994 -37.27841 -36.93147 -35.61664 -34.19688 -32.55568 -30.89038 -28.69057 -27.06904 -26.56134 -24.69338 -23.83293 -22.26963 -21.24539 -19.67651 -19.11320 -18.49348 -18.23122 -17.79052 -17.73641 -17.10220 -17.06500 -16.72470 -16.47316 -15.66956 -15.58587 -15.16695 -14.92140 -14.61833 -14.24742 -14.22315 -14.18805 -13.76257 -13.47015 -13.36172 -13.07971 -12.82299 -12.74700 -12.58277 -12.46713 -12.05892 -11.79065 -11.66321 -11.21143 -11.04392 -10.91015 -10.60323 -9.83505 -8.96404 -8.53774 -6.11605 -0.09250 0.50764 1.16150 1.21920 1.35136 1.42271 1.58743 1.89315 2.05651 2.16125 2.67972 2.70821 3.01088 3.69101 3.77492 3.83136 3.90920 4.10058 4.17492 4.29876 4.37234 4.48129 4.50710 4.59404 4.68100 4.81570 4.88401 5.06974 5.18813 5.33273 5.40138 5.56089 5.56902 5.95419 6.05209 6.20386 6.89852 6.91817 6.97427 7.34172 7.67921 8.57242 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.005505 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.290878 B = 5084.696628 C = 6200.618407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.488 5.488 3 C 0.203 3.797 4 C -0.234 4.234 5 C 0.541 3.459 6 O -0.607 6.607 7 N -0.464 5.464 8 C -0.342 4.342 9 H 0.107 0.893 10 C 0.047 3.953 11 N -0.877 5.877 12 Si 0.902 3.098 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.110 3.890 17 C -0.117 4.117 18 C 0.495 3.505 19 O -0.553 6.553 20 O -0.505 6.505 21 C 0.031 3.969 22 C -0.282 4.282 23 C 0.508 3.492 24 O -0.595 6.595 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.203 0.797 29 H 0.281 0.719 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.428 0.572 35 H 0.154 0.846 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 6.431 0.681 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.195 5.195 3 C 0.071 3.929 4 C -0.242 4.242 5 C 0.333 3.667 6 O -0.493 6.493 7 N -0.183 5.183 8 C -0.469 4.469 9 H 0.124 0.876 10 C -0.160 4.160 11 N -0.512 5.512 12 Si 0.729 3.271 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.192 1.192 16 C -0.013 4.013 17 C -0.156 4.156 18 C 0.339 3.661 19 O -0.445 6.445 20 O -0.319 6.319 21 C 0.010 3.990 22 C -0.304 4.304 23 C 0.313 3.687 24 O -0.483 6.483 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.220 0.780 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.290 0.710 35 H 0.171 0.829 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.659 5.847 0.261 11.294 hybrid contribution 1.628 0.686 -0.403 1.812 sum -8.031 6.533 -0.143 10.354 Atomic orbital electron populations 1.22568 0.74491 1.06297 1.06127 1.45121 1.11056 1.05932 1.57406 1.22392 0.91965 0.90370 0.88176 1.19345 0.92953 0.94052 1.17885 1.17909 0.82675 0.87128 0.79022 1.90660 1.70260 1.41830 1.46581 1.43544 1.20436 1.06678 1.47661 1.19091 0.90940 1.01220 1.35683 0.87612 1.25570 0.97524 0.96585 0.96317 1.69787 1.11882 1.38644 1.30921 0.86538 0.79783 0.78598 0.82139 1.19837 1.21078 1.19171 1.21374 0.96915 0.85334 0.97656 1.21578 1.02873 0.89594 1.01510 1.23361 0.78437 0.86682 0.77662 1.90706 1.35557 1.76174 1.42038 1.84501 1.67450 1.33300 1.46614 1.22235 1.02733 0.90424 0.83643 1.21962 0.92222 1.00232 1.15942 1.17339 0.89664 0.82936 0.78714 1.90841 1.70187 1.31306 1.55920 0.89137 0.87295 0.87372 0.77989 0.90865 0.92075 0.90718 0.85935 0.86237 0.71001 0.82869 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.55 127.77 1.35 2.12 16 2 N -0.49 -13.04 2.95 -673.01 -1.99 -15.03 16 3 C 0.20 5.47 9.92 84.23 0.84 6.30 16 4 C -0.23 -8.21 5.48 -20.08 -0.11 -8.32 16 5 C 0.54 21.71 7.36 86.65 0.64 22.35 16 6 O -0.61 -25.74 16.35 -4.15 -0.07 -25.81 16 7 N -0.46 -19.55 2.19 -639.31 -1.40 -20.95 16 8 C -0.34 -15.55 6.87 84.08 0.58 -14.97 16 9 H 0.11 5.02 6.02 -2.91 -0.02 5.00 16 10 C 0.05 2.23 5.31 84.94 0.45 2.69 16 11 N -0.88 -44.31 13.96 21.67 0.30 -44.01 16 12 Si 0.90 40.05 25.02 68.60 1.72 41.77 16 13 H -0.27 -12.16 6.66 99.48 0.66 -11.49 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 C 0.11 4.46 3.56 86.38 0.31 4.77 16 17 C -0.12 -3.80 6.14 29.85 0.18 -3.62 16 18 C 0.49 15.16 8.33 71.24 0.59 15.75 16 19 O -0.55 -20.67 16.74 21.98 0.37 -20.31 16 20 O -0.51 -11.14 13.42 -51.47 -0.69 -11.83 16 21 C 0.03 1.14 7.67 22.58 0.17 1.32 16 22 C -0.28 -9.98 9.97 22.36 0.22 -9.75 16 23 C 0.51 17.59 7.40 84.90 0.63 18.22 16 24 O -0.60 -23.58 16.33 -5.21 -0.09 -23.67 16 25 H 0.09 1.86 6.83 -2.39 -0.02 1.84 16 26 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.20 4.03 7.96 -2.91 -0.02 4.01 16 29 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.06 2.67 3.11 -2.39 -0.01 2.67 16 31 H 0.07 3.13 7.31 -2.39 -0.02 3.12 16 32 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 34 H 0.43 5.28 9.10 -74.06 -0.67 4.61 16 35 H 0.15 6.21 5.61 -2.91 -0.02 6.20 16 36 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -67.08 311.26 4.44 -62.64 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.43 Total: 20.33 kcal Atomic # 6 Polarization: 31.01 SS G_CDS: 5.85 Total: 36.85 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -3.08 Total: -79.99 kcal Atomic # 8 Polarization: -81.14 SS G_CDS: -0.48 Total: -81.61 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.72 Total: 41.77 kcal Total: -67.08 4.44 -62.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600929400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.669 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds