Wall clock time and date at job start Tue Mar 31 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48496 * 109.46948 * 240.00008 * 3 2 1 5 5 H 1.48499 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46911 * 120.00018 * 3 2 1 7 7 C 1.38948 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99796 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99734 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00346 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99809 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46972 * 179.97438 * 12 10 9 14 14 C 1.34668 * 117.00102 * 179.97438 * 13 12 10 15 15 O 1.21415 * 119.99727 * 0.02562 * 14 13 12 16 16 C 1.48230 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.32474 * 119.80601 * 354.24186 * 16 14 13 18 18 C 1.31632 * 121.80330 * 179.97438 * 17 16 14 19 19 C 1.38601 * 121.19381 * 359.97438 * 18 17 16 20 20 C 1.38466 * 119.46423 * 0.27277 * 19 18 17 21 21 C 1.39881 * 118.34639 * 359.49139 * 20 19 18 22 22 C 1.47880 * 120.60090 * 180.25958 * 21 20 19 23 23 O 1.21444 * 120.00496 * 124.98955 * 22 21 20 24 24 O 1.34702 * 119.99888 * 304.99321 * 22 21 20 25 25 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00379 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47381 * 59.99618 * 12 10 9 28 28 H 1.08999 * 109.47003 * 299.99588 * 12 10 9 29 29 H 1.08004 * 119.40018 * 180.02562 * 18 17 16 30 30 H 1.08004 * 120.26826 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.82861 * 179.72055 * 20 19 18 32 32 H 0.96696 * 117.00085 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9664 -0.0005 14 6 1.6731 -7.2109 -0.0006 15 8 0.4694 -7.3701 -0.0006 16 6 2.5762 -8.3864 -0.0016 17 7 3.8842 -8.2118 -0.1179 18 6 4.7219 -9.2271 -0.1229 19 6 4.2691 -10.5318 -0.0056 20 6 2.9109 -10.7734 0.1136 21 6 2.0399 -9.6788 0.1218 22 6 0.5806 -9.8790 0.2524 23 8 -0.0331 -9.3155 1.1360 24 8 -0.0682 -10.6866 -0.6086 25 1 -0.4850 0.8400 0.0004 26 1 0.3536 -2.3907 0.0005 27 1 0.6177 -4.9205 -0.8902 28 1 0.6171 -4.9209 0.8897 29 1 5.7812 -9.0401 -0.2195 30 1 4.9697 -11.3538 -0.0119 31 1 2.5337 -11.7815 0.2018 32 1 -1.0219 -10.7860 -0.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605586453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:17 Heat of formation + Delta-G solvation = -156.972607 kcal Electronic energy + Delta-G solvation = -22420.502100 eV Core-core repulsion = 18540.302623 eV Total energy + Delta-G solvation = -3880.199477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40641 -39.91103 -39.58677 -38.06165 -36.37857 -35.97293 -33.95459 -33.31670 -32.24242 -31.32934 -28.53142 -26.04951 -25.04813 -24.39567 -22.29596 -21.31522 -19.53815 -18.63796 -18.23274 -18.03833 -17.64301 -17.11841 -16.42947 -16.40665 -15.89161 -15.30571 -15.24320 -14.63681 -14.50639 -14.20977 -13.92862 -13.71586 -13.62735 -13.13270 -12.73821 -12.28895 -11.98342 -11.75429 -11.57744 -11.09432 -11.07492 -10.63108 -10.51024 -10.45405 -10.38259 -10.25317 -10.00716 -9.76679 -9.54928 -8.46570 -8.03477 -6.45411 -3.87320 -0.08679 0.51619 2.01577 2.27673 2.42663 2.63821 3.19057 3.25678 3.30318 3.35971 3.77523 3.79004 4.12258 4.24171 4.33114 4.35827 4.59978 4.81815 5.05965 5.11574 5.19171 5.30691 5.42409 5.54859 5.72821 5.91879 6.08510 6.24039 6.48048 7.23113 7.52022 7.63703 7.76242 7.98881 8.53668 9.11629 9.44042 9.94508 10.71905 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.003200 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.004204 B = 8747.325502 C = 9616.233503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.440 3.560 11 O -0.571 6.571 12 C 0.058 3.942 13 O -0.296 6.296 14 C 0.508 3.492 15 O -0.482 6.482 16 C 0.153 3.847 17 N -0.423 5.423 18 C 0.122 3.878 19 C -0.148 4.148 20 C -0.040 4.040 21 C -0.106 4.106 22 C 0.531 3.469 23 O -0.467 6.467 24 O -0.511 6.511 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -24.005 -1.159 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.225 3.775 11 O -0.454 6.454 12 C -0.020 4.020 13 O -0.209 6.209 14 C 0.349 3.651 15 O -0.369 6.369 16 C 0.015 3.985 17 N -0.133 5.133 18 C -0.037 4.037 19 C -0.168 4.168 20 C -0.065 4.065 21 C -0.110 4.110 22 C 0.370 3.630 23 O -0.352 6.352 24 O -0.324 6.324 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.193 0.807 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.941 -22.740 -1.031 23.102 hybrid contribution -1.314 -0.053 0.165 1.326 sum 2.627 -22.793 -0.867 22.961 Atomic orbital electron populations 1.69606 1.05993 1.28534 1.49770 1.25303 0.95678 0.99823 0.96952 0.85856 0.78735 0.80093 0.79187 1.19758 1.20908 1.19761 1.19683 0.93471 0.81757 1.48191 0.87645 1.41676 1.09343 1.04000 1.64071 1.19257 0.88345 0.83963 0.85975 1.90578 1.13299 1.86678 1.54859 1.22880 0.90879 0.84475 1.03741 1.86701 1.39268 1.13013 1.81914 1.20727 0.86273 0.83934 0.74197 1.90927 1.14864 1.86500 1.44585 1.20113 0.90616 0.89271 0.98541 1.67897 1.01540 1.35225 1.08649 1.23265 1.00537 0.87604 0.92297 1.22482 0.95942 0.99299 0.99091 1.21716 0.92859 0.98499 0.93465 1.19868 0.91853 0.94105 1.05211 1.20258 0.87422 0.75869 0.79475 1.90968 1.67413 1.43621 1.33148 1.84547 1.28902 1.63266 1.55695 0.91615 0.77163 0.89320 0.89204 0.80676 0.82779 0.82695 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.52 9.68 -14.94 -0.14 -8.66 16 8 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16 9 N -0.55 -14.41 5.29 -10.97 -0.06 -14.46 16 10 C 0.44 11.07 7.86 -10.98 -0.09 10.98 16 11 O -0.57 -16.48 16.08 -14.11 -0.23 -16.70 16 12 C 0.06 1.18 5.95 36.01 0.21 1.39 16 13 O -0.30 -6.16 9.58 -47.08 -0.45 -6.61 16 14 C 0.51 9.32 7.86 34.84 0.27 9.60 16 15 O -0.48 -9.24 12.76 -27.18 -0.35 -9.58 16 16 C 0.15 2.31 6.78 -82.64 -0.56 1.74 16 17 N -0.42 -5.95 10.11 -9.51 -0.10 -6.04 16 18 C 0.12 1.06 11.17 -17.50 -0.20 0.86 16 19 C -0.15 -0.88 10.10 -39.36 -0.40 -1.27 16 20 C -0.04 -0.30 9.94 -38.88 -0.39 -0.68 16 21 C -0.11 -1.28 5.80 -104.49 -0.61 -1.88 16 22 C 0.53 6.76 6.42 34.68 0.22 6.99 16 23 O -0.47 -7.66 15.53 -27.21 -0.42 -8.08 16 24 O -0.51 -4.61 13.44 -40.50 -0.54 -5.16 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 31 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.42 1.99 9.11 45.56 0.42 2.41 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -37.92 306.70 -5.12 -43.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -1.53 Total: 7.13 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: -1.76 Total: 19.63 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.57 Total: -44.33 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.99 Total: -46.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.92 -5.12 -43.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.937 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds