Wall clock time and date at job start Tue Mar 31 2020 03:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48496 * 109.46948 * 240.00008 * 3 2 1 5 5 H 1.48499 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46911 * 120.00018 * 3 2 1 7 7 C 1.38948 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99796 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99734 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00346 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99809 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46972 * 179.97438 * 12 10 9 14 14 C 1.34668 * 117.00102 * 179.97438 * 13 12 10 15 15 O 1.21415 * 119.99727 * 0.02562 * 14 13 12 16 16 C 1.48230 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.32474 * 119.80601 * 354.24186 * 16 14 13 18 18 C 1.31632 * 121.80330 * 179.97438 * 17 16 14 19 19 C 1.38601 * 121.19381 * 359.97438 * 18 17 16 20 20 C 1.38466 * 119.46423 * 0.27277 * 19 18 17 21 21 C 1.39881 * 118.34639 * 359.49139 * 20 19 18 22 22 C 1.47880 * 120.60090 * 180.25958 * 21 20 19 23 23 O 1.21444 * 120.00496 * 124.98955 * 22 21 20 24 24 O 1.34702 * 119.99888 * 304.99321 * 22 21 20 25 25 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00379 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47381 * 59.99618 * 12 10 9 28 28 H 1.08999 * 109.47003 * 299.99588 * 12 10 9 29 29 H 1.08004 * 119.40018 * 180.02562 * 18 17 16 30 30 H 1.08004 * 120.26826 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.82861 * 179.72055 * 20 19 18 32 32 H 0.96696 * 117.00085 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9664 -0.0005 14 6 1.6731 -7.2109 -0.0006 15 8 0.4694 -7.3701 -0.0006 16 6 2.5762 -8.3864 -0.0016 17 7 3.8842 -8.2118 -0.1179 18 6 4.7219 -9.2271 -0.1229 19 6 4.2691 -10.5318 -0.0056 20 6 2.9109 -10.7734 0.1136 21 6 2.0399 -9.6788 0.1218 22 6 0.5806 -9.8790 0.2524 23 8 -0.0331 -9.3155 1.1360 24 8 -0.0682 -10.6866 -0.6086 25 1 -0.4850 0.8400 0.0004 26 1 0.3536 -2.3907 0.0005 27 1 0.6177 -4.9205 -0.8902 28 1 0.6171 -4.9209 0.8897 29 1 5.7812 -9.0401 -0.2195 30 1 4.9697 -11.3538 -0.0119 31 1 2.5337 -11.7815 0.2018 32 1 -1.0219 -10.7860 -0.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605586453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:16 Heat of formation + Delta-G solvation = -186.462990 kcal Electronic energy + Delta-G solvation = -22421.780899 eV Core-core repulsion = 18540.302623 eV Total energy + Delta-G solvation = -3881.478276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41484 -41.20819 -40.49287 -39.99360 -37.72520 -37.05043 -36.06402 -34.07275 -33.45451 -33.05669 -30.22048 -27.25218 -26.37026 -25.69550 -23.28533 -22.35429 -21.49264 -20.10918 -19.71262 -19.22767 -18.60568 -18.16754 -17.89667 -17.67901 -17.46649 -16.70187 -16.22833 -16.06603 -15.95643 -15.78936 -15.15524 -14.93604 -14.68941 -14.29440 -13.97249 -13.84771 -13.57278 -13.45757 -12.94680 -12.70050 -12.50599 -12.19185 -12.12667 -11.99307 -11.76688 -11.59458 -11.24677 -10.82373 -10.55450 -10.52874 -10.14492 -8.53841 -6.05128 -0.96082 -0.15922 1.02554 1.11912 1.18794 1.36493 1.42284 1.54283 1.83515 1.84300 2.26734 2.53276 2.71741 3.10964 3.13509 3.46877 3.61206 3.78521 3.83414 3.93829 4.06250 4.16077 4.26663 4.43539 4.73520 4.86739 5.00908 5.34863 5.35812 5.48836 5.85568 6.21541 6.45790 6.63454 6.85962 7.00079 7.36010 7.89860 8.63134 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.003200 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.004204 B = 8747.325502 C = 9616.233503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.341 4.341 8 H 0.085 0.915 9 N -0.555 5.555 10 C 0.437 3.563 11 O -0.614 6.614 12 C 0.068 3.932 13 O -0.321 6.321 14 C 0.502 3.498 15 O -0.500 6.500 16 C 0.113 3.887 17 N -0.469 5.469 18 C 0.113 3.887 19 C -0.109 4.109 20 C -0.031 4.031 21 C -0.116 4.116 22 C 0.534 3.466 23 O -0.515 6.515 24 O -0.497 6.497 25 H 0.282 0.718 26 H 0.400 0.600 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.207 0.793 30 H 0.211 0.789 31 H 0.197 0.803 32 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -26.242 -1.493 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.223 3.777 11 O -0.500 6.500 12 C -0.009 4.009 13 O -0.234 6.234 14 C 0.345 3.655 15 O -0.388 6.388 16 C -0.024 4.024 17 N -0.180 5.180 18 C -0.046 4.046 19 C -0.128 4.128 20 C -0.056 4.056 21 C -0.121 4.121 22 C 0.376 3.624 23 O -0.403 6.403 24 O -0.312 6.312 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.214 0.786 32 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 4.930 -25.014 -1.386 25.532 hybrid contribution -1.585 0.460 0.232 1.667 sum 3.345 -24.553 -1.154 24.807 Atomic orbital electron populations 1.69670 1.07025 1.29891 1.48963 1.26170 0.96611 1.02660 0.95479 0.84883 0.77732 0.75876 0.79209 1.19350 1.19236 1.19445 1.19721 0.93016 0.83315 1.50925 0.89695 1.41706 1.09520 1.04073 1.63985 1.19961 0.88061 0.85209 0.84426 1.90533 1.15334 1.87579 1.56597 1.22637 0.90224 0.82597 1.05426 1.86693 1.39898 1.14136 1.82717 1.21515 0.87010 0.83799 0.73186 1.90889 1.15706 1.86582 1.45641 1.19742 0.90964 0.88651 1.03030 1.67753 1.01655 1.38225 1.10361 1.23965 1.01250 0.88031 0.91332 1.23085 0.96066 0.99421 0.94217 1.22290 0.92911 0.98741 0.91630 1.20018 0.92057 0.94215 1.05773 1.20515 0.87946 0.75149 0.78827 1.90944 1.68508 1.45642 1.35252 1.84509 1.30478 1.61918 1.54258 0.90876 0.76567 0.87272 0.87680 0.77647 0.77167 0.78637 0.70310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.34 -19.81 9.68 84.04 0.81 -19.00 16 8 H 0.09 5.20 7.16 -2.91 -0.02 5.18 16 9 N -0.56 -29.96 5.29 -306.99 -1.62 -31.58 16 10 C 0.44 22.95 7.86 87.66 0.69 23.64 16 11 O -0.61 -37.20 16.08 15.75 0.25 -36.94 16 12 C 0.07 2.90 5.95 71.24 0.42 3.33 16 13 O -0.32 -14.05 9.58 -49.38 -0.47 -14.52 16 14 C 0.50 19.35 7.86 70.48 0.55 19.91 16 15 O -0.50 -20.03 12.76 27.74 0.35 -19.68 16 16 C 0.11 3.47 6.78 42.25 0.29 3.75 16 17 N -0.47 -13.15 10.11 -184.00 -1.86 -15.01 16 18 C 0.11 1.65 11.17 84.81 0.95 2.60 16 19 C -0.11 -0.74 10.10 22.41 0.23 -0.51 16 20 C -0.03 -0.33 9.94 22.72 0.23 -0.11 16 21 C -0.12 -2.66 5.80 -19.78 -0.11 -2.77 16 22 C 0.53 13.38 6.42 70.38 0.45 13.83 16 23 O -0.52 -17.35 15.53 27.65 0.43 -16.92 16 24 O -0.50 -8.18 13.44 -56.11 -0.75 -8.94 16 25 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.40 20.33 7.90 -92.71 -0.73 19.60 16 27 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 28 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 29 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.21 -0.86 8.06 -2.91 -0.02 -0.88 16 31 H 0.20 0.50 8.06 -2.91 -0.02 0.47 16 32 H 0.43 3.56 9.11 -74.06 -0.67 2.88 16 Total: -1.00 -87.94 306.70 3.42 -84.52 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.19 Total: 19.00 kcal Atomic # 6 Polarization: 39.70 SS G_CDS: 4.97 Total: 44.67 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.20 Total: -96.23 kcal Atomic # 8 Polarization: -96.81 SS G_CDS: -0.19 Total: -97.00 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -87.94 3.42 -84.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.943 kcal (2) G-P(sol) polarization free energy of solvation -87.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds