Wall clock time and date at job start Tue Mar 31 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37069 * 119.70912 * 2 1 4 4 C 1.47543 * 119.78224 * 359.97438 * 3 2 1 5 5 O 1.21642 * 119.99710 * 320.96522 * 4 3 2 6 6 N 1.34779 * 120.00144 * 140.69114 * 4 3 2 7 7 C 1.36462 * 119.99919 * 127.49418 * 6 4 3 8 8 H 1.08005 * 120.00028 * 158.76056 * 7 6 4 9 9 C 1.39318 * 120.00249 * 338.75586 * 7 6 4 10 10 N 1.31197 * 119.99877 * 348.60400 * 9 7 6 11 11 Si 1.86798 * 120.00077 * 168.60070 * 9 7 6 12 12 H 1.48496 * 109.47175 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47133 * 120.00287 * 11 9 7 14 14 H 1.48504 * 109.47134 * 240.00071 * 11 9 7 15 15 C 1.46499 * 119.99928 * 307.49127 * 6 4 3 16 16 C 1.52998 * 109.46767 * 95.78756 * 15 6 4 17 17 C 1.50703 * 109.47212 * 174.46299 * 16 15 6 18 18 O 1.20828 * 119.99341 * 0.02562 * 17 16 15 19 19 O 1.34225 * 120.00360 * 179.97438 * 17 16 15 20 20 C 1.36559 * 120.43822 * 179.70732 * 3 2 1 21 21 C 1.40205 * 119.88265 * 0.26973 * 20 3 2 22 22 C 1.36262 * 119.43778 * 0.02562 * 21 20 3 23 23 C 1.34672 * 119.71645 * 180.25323 * 2 1 3 24 24 O 1.21976 * 119.94237 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47365 * 86.85019 * 1 2 3 26 26 H 1.09002 * 109.46601 * 206.85520 * 1 2 3 27 27 H 1.08997 * 109.46787 * 326.84782 * 1 2 3 28 28 H 0.96996 * 119.99742 * 185.01912 * 10 9 7 29 29 H 1.08996 * 109.47296 * 215.78640 * 15 6 4 30 30 H 1.09003 * 109.46886 * 335.79246 * 15 6 4 31 31 H 1.09002 * 109.47670 * 294.46108 * 16 15 6 32 32 H 1.09005 * 109.47432 * 54.46730 * 16 15 6 33 33 H 0.96699 * 116.99924 * 180.02562 * 19 17 16 34 34 H 1.08005 * 120.06082 * 180.29102 * 20 3 2 35 35 H 1.08004 * 120.28603 * 180.02562 * 21 20 3 36 36 H 1.08004 * 120.22169 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1444 1.1905 0.0000 4 6 1.3953 2.4617 -0.0006 5 8 0.3818 2.5701 -0.6645 6 7 1.8310 3.5009 0.7388 7 6 2.0077 4.7238 0.1595 8 1 2.0174 5.6144 0.7705 9 6 2.1755 4.8236 -1.2199 10 7 2.3877 3.7440 -1.9346 11 14 2.0984 6.4943 -2.0518 12 1 1.8504 7.5443 -1.0315 13 1 3.3873 6.7657 -2.7377 14 1 0.9968 6.5010 -3.0477 15 6 2.1148 3.3177 2.1643 16 6 3.6087 3.0489 2.3563 17 6 3.9243 2.9955 3.8290 18 8 3.0444 3.1556 4.6415 19 8 5.1825 2.7691 4.2380 20 6 3.5098 1.2079 0.0060 21 6 4.2238 0.0012 0.0065 22 6 3.5435 -1.1794 0.0004 23 6 2.1326 -1.1696 -0.0052 24 8 1.5165 -2.2223 -0.0103 25 1 -0.3633 0.0565 -1.0260 26 1 -0.3632 -0.9169 0.4643 27 1 -0.3633 0.8604 0.5620 28 1 2.5769 3.8197 -2.8829 29 1 1.8349 4.2192 2.7093 30 1 1.5417 2.4714 2.5430 31 1 3.8689 2.0965 1.8943 32 1 4.1847 3.8483 1.8902 33 1 5.3359 2.7434 5.1924 34 1 4.0389 2.1495 0.0107 35 1 5.3038 0.0074 0.0117 36 1 4.0807 -2.1164 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608080347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:12 Heat of formation + Delta-G solvation = -123.642622 kcal Electronic energy + Delta-G solvation = -24642.911195 eV Core-core repulsion = 20899.990110 eV Total energy + Delta-G solvation = -3742.921086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.43009 -41.18031 -40.22947 -37.69908 -37.21105 -36.75424 -35.28558 -34.26349 -31.76707 -31.16059 -28.61664 -27.36110 -26.01882 -24.84923 -23.52760 -22.21082 -21.45868 -19.29304 -19.12957 -18.35327 -18.26388 -17.67908 -17.23217 -17.05683 -16.92051 -16.82658 -16.10848 -15.82856 -15.47352 -15.37783 -14.46528 -14.43302 -14.30430 -13.91656 -13.57536 -13.39652 -13.27579 -13.24948 -12.90247 -12.74896 -12.55505 -12.52345 -12.44139 -12.13300 -11.88922 -11.52719 -11.29471 -11.15475 -10.97314 -10.48827 -9.51706 -8.93933 -8.32466 -5.79595 -0.32249 0.78902 1.30890 1.42947 1.50661 1.56883 1.60327 1.95318 2.17017 2.40491 2.69952 2.90954 3.19895 3.70013 3.88694 3.99679 4.06669 4.11597 4.22432 4.30532 4.37716 4.52963 4.54572 4.63222 4.71591 4.86368 5.05668 5.08656 5.23036 5.32608 5.44149 5.56231 5.70182 5.91921 6.11828 6.83589 6.93539 7.09714 7.15006 7.44089 7.88972 8.79307 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.008246 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.295994 B = 3394.911241 C = 5025.750385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.488 5.488 3 C 0.126 3.874 4 C 0.572 3.428 5 O -0.558 6.558 6 N -0.504 5.504 7 C -0.311 4.311 8 H 0.101 0.899 9 C -0.012 4.012 10 N -0.884 5.884 11 Si 0.985 3.015 12 H -0.258 1.258 13 H -0.274 1.274 14 H -0.301 1.301 15 C 0.136 3.864 16 C -0.137 4.137 17 C 0.494 3.506 18 O -0.553 6.553 19 O -0.509 6.509 20 C -0.174 4.174 21 C 0.001 3.999 22 C -0.249 4.249 23 C 0.495 3.505 24 O -0.606 6.606 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.270 0.730 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.426 0.574 34 H 0.157 0.843 35 H 0.186 0.814 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -1.638 7.734 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.199 5.199 3 C 0.015 3.985 4 C 0.362 3.638 5 O -0.437 6.437 6 N -0.228 5.228 7 C -0.438 4.438 8 H 0.119 0.881 9 C -0.215 4.215 10 N -0.523 5.523 11 Si 0.811 3.189 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.229 1.229 15 C 0.012 3.988 16 C -0.176 4.176 17 C 0.338 3.662 18 O -0.445 6.445 19 O -0.322 6.322 20 C -0.198 4.198 21 C -0.020 4.020 22 C -0.271 4.271 23 C 0.300 3.700 24 O -0.494 6.494 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.287 0.713 34 H 0.175 0.825 35 H 0.203 0.797 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.896 -2.189 7.013 10.785 hybrid contribution -0.304 0.790 -0.278 0.891 sum 7.592 -1.399 6.736 10.245 Atomic orbital electron populations 1.22016 0.77316 1.03933 1.03598 1.45607 1.09619 1.06055 1.58626 1.21114 0.94208 0.85839 0.97351 1.17140 0.83413 0.82085 0.81120 1.90564 1.24566 1.83051 1.45503 1.42741 1.64292 1.08399 1.07405 1.19775 1.47651 0.84876 0.91461 0.88102 1.25934 0.96702 1.01318 0.97514 1.69405 1.45234 1.29662 1.08042 0.84973 0.77184 0.78624 0.78168 1.18141 1.19933 1.22881 1.21231 0.93503 1.01998 0.82045 1.22276 0.99309 1.07383 0.88596 1.23508 0.79772 0.70458 0.92432 1.90703 1.48880 1.47868 1.57034 1.84517 1.30095 1.83144 1.34423 1.21128 0.90559 1.00999 1.07088 1.21837 1.02715 0.89744 0.87734 1.22378 0.90840 1.01659 1.12210 1.17892 0.90749 0.81892 0.79446 1.90841 1.71138 1.30431 1.57036 0.91595 0.88663 0.90195 0.91982 0.90053 0.92215 0.86260 0.85794 0.71252 0.82508 0.79685 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.81 9.11 127.77 1.16 3.97 16 2 N -0.49 -19.43 3.02 -660.79 -2.00 -21.42 16 3 C 0.13 5.05 6.13 40.39 0.25 5.30 16 4 C 0.57 26.61 3.26 86.70 0.28 26.89 16 5 O -0.56 -30.33 14.48 -4.16 -0.06 -30.39 16 6 N -0.50 -21.72 2.33 -639.22 -1.49 -23.21 16 7 C -0.31 -14.35 9.54 84.23 0.80 -13.55 16 8 H 0.10 4.38 7.86 -2.91 -0.02 4.35 16 9 C -0.01 -0.56 5.05 85.05 0.43 -0.13 16 10 N -0.88 -45.15 10.88 21.72 0.24 -44.91 16 11 Si 0.98 39.65 29.57 68.60 2.03 41.68 16 12 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 H -0.30 -13.07 7.11 99.48 0.71 -12.37 16 15 C 0.14 4.70 4.65 86.38 0.40 5.10 16 16 C -0.14 -3.73 5.17 29.85 0.15 -3.58 16 17 C 0.49 12.44 8.33 71.24 0.59 13.04 16 18 O -0.55 -17.28 16.67 21.96 0.37 -16.92 16 19 O -0.51 -9.15 13.42 -51.37 -0.69 -9.84 16 20 C -0.17 -5.73 6.67 22.36 0.15 -5.58 16 21 C 0.00 0.03 10.08 22.29 0.22 0.25 16 22 C -0.25 -7.35 10.00 22.51 0.23 -7.12 16 23 C 0.50 19.14 7.43 84.96 0.63 19.77 16 24 O -0.61 -26.66 16.60 -5.24 -0.09 -26.75 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.09 3.35 7.31 -2.39 -0.02 3.33 16 27 H 0.08 3.12 6.45 -2.39 -0.02 3.10 16 28 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.08 2.79 7.88 -2.39 -0.02 2.77 16 30 H 0.06 2.06 7.99 -2.39 -0.02 2.04 16 31 H 0.12 3.10 4.71 -2.39 -0.01 3.09 16 32 H 0.12 3.28 8.14 -2.38 -0.02 3.26 16 33 H 0.43 3.83 9.10 -74.06 -0.67 3.15 16 34 H 0.16 5.18 6.89 -2.91 -0.02 5.16 16 35 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -70.22 312.60 4.08 -66.14 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.47 Total: 21.26 kcal Atomic # 6 Polarization: 39.05 SS G_CDS: 5.31 Total: 44.35 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -3.25 Total: -89.54 kcal Atomic # 8 Polarization: -83.43 SS G_CDS: -0.47 Total: -83.90 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -70.22 4.08 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608080347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.505 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds