Wall clock time and date at job start Tue Mar 31 2020 03:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47279 * 325.00167 * 14 13 12 16 16 C 1.50694 * 109.47106 * 85.00220 * 14 13 12 17 17 O 1.20829 * 120.00042 * 0.02562 * 16 14 13 18 18 O 1.34232 * 120.00362 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.46893 * 205.00308 * 14 13 12 20 20 C 1.38285 * 119.97163 * 319.99769 * 19 14 13 21 21 C 1.38247 * 120.11233 * 180.02562 * 20 19 14 22 22 C 1.38170 * 120.05380 * 359.95909 * 21 20 19 23 23 C 1.38712 * 119.94081 * 0.02562 * 22 21 20 24 24 O 1.35907 * 120.05364 * 180.02562 * 23 22 21 25 25 C 1.38123 * 119.97109 * 139.72575 * 19 14 13 26 26 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 31 31 H 0.96700 * 117.00257 * 179.97438 * 18 16 14 32 32 H 1.07998 * 119.94670 * 359.97438 * 20 19 14 33 33 H 1.07999 * 119.97675 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.02601 * 180.02562 * 22 21 20 35 35 H 0.96700 * 114.00211 * 89.99469 * 24 23 22 36 36 H 1.08001 * 120.02753 * 359.97438 * 25 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5853 -7.1890 0.5882 16 6 1.1496 -7.6531 -1.4169 17 8 1.4537 -6.9249 -2.3318 18 8 0.5012 -8.8028 -1.6612 19 6 2.3911 -8.3263 0.5985 20 6 3.7423 -8.3367 0.3047 21 6 4.5639 -9.3040 0.8532 22 6 4.0365 -10.2623 1.6972 23 6 2.6815 -10.2537 1.9937 24 8 2.1604 -11.1950 2.8240 25 6 1.8600 -9.2789 1.4459 26 1 -0.4850 0.8401 -0.0004 27 1 0.3535 -2.3906 0.0002 28 1 0.6170 -4.9209 0.8886 29 1 0.6176 -4.9205 -0.8913 30 1 2.8335 -5.9120 -0.7829 31 1 0.2989 -9.0050 -2.5850 32 1 4.1565 -7.5886 -0.3549 33 1 5.6188 -9.3103 0.6219 34 1 4.6788 -11.0175 2.1257 35 1 2.1646 -10.9420 3.7573 36 1 0.8054 -9.2674 1.6788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:57 Heat of formation + Delta-G solvation = -136.803162 kcal Electronic energy + Delta-G solvation = -22818.884476 eV Core-core repulsion = 19075.392707 eV Total energy + Delta-G solvation = -3743.491769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84045 -39.65270 -38.28595 -37.16228 -36.39957 -35.15497 -33.87707 -31.74976 -31.18639 -29.93482 -27.94873 -25.78696 -23.95003 -22.76085 -22.67263 -20.81240 -19.39367 -18.58475 -18.07365 -17.84083 -17.27601 -16.66178 -16.15817 -15.95793 -15.50035 -15.17498 -14.82422 -14.46465 -14.25552 -13.96517 -13.76434 -13.51775 -13.16777 -12.77948 -12.35261 -12.21794 -11.99309 -11.76272 -11.65629 -11.57397 -11.48430 -11.03939 -10.93753 -10.66043 -10.44138 -10.21736 -9.50685 -9.04273 -8.73676 -8.70190 -8.29519 -7.97376 -6.41928 -3.82871 1.05199 1.16653 2.02373 2.86613 3.20497 3.26166 3.30383 3.42347 3.88779 3.97561 4.07341 4.25943 4.48794 4.69229 4.95563 4.98620 5.02103 5.13482 5.21896 5.25913 5.40747 5.66546 5.68522 5.77132 5.87861 6.17452 6.21905 6.28434 6.32255 6.37721 6.62460 6.86101 7.34765 7.45730 7.55026 7.71993 8.04642 8.59809 9.16877 9.52582 10.03562 10.75729 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.023462 B = 0.003222 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.155493 B = 8688.057927 C = 9146.422870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.444 3.556 11 O -0.582 6.582 12 C 0.042 3.958 13 N -0.630 5.630 14 C 0.137 3.863 15 H 0.126 0.874 16 C 0.452 3.548 17 O -0.506 6.506 18 O -0.512 6.512 19 C -0.053 4.053 20 C -0.097 4.097 21 C -0.104 4.104 22 C -0.141 4.141 23 C 0.099 3.901 24 O -0.500 6.500 25 C -0.122 4.122 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.364 0.636 31 H 0.406 0.594 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.389 0.611 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -20.399 2.641 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.229 3.771 11 O -0.466 6.466 12 C -0.090 4.090 13 N -0.264 5.264 14 C 0.024 3.976 15 H 0.144 0.856 16 C 0.291 3.709 17 O -0.394 6.394 18 O -0.323 6.323 19 C -0.054 4.054 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.160 4.160 23 C 0.055 3.945 24 O -0.310 6.310 25 C -0.141 4.141 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.187 0.813 31 H 0.264 0.736 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.245 0.755 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.148 -20.208 2.939 20.453 hybrid contribution -0.712 0.981 -1.107 1.642 sum 0.436 -19.227 1.832 19.319 Atomic orbital electron populations 1.69607 1.05951 1.28303 1.50441 1.25265 0.95641 0.99741 0.97234 0.85903 0.78755 0.80380 0.79101 1.19893 1.20979 1.19845 1.19664 0.93381 0.82164 1.47737 0.87894 1.41814 1.09201 1.04512 1.64214 1.19581 0.88299 0.84478 0.84697 1.90529 1.13630 1.86961 1.55485 1.21852 0.94504 0.90931 1.01696 1.60596 1.17222 0.97685 1.50865 1.20351 0.98206 0.90484 0.88608 0.85621 1.24964 0.73771 0.78219 0.93941 1.90780 1.50589 1.51543 1.46457 1.84597 1.70573 1.40620 1.36469 1.19099 0.93868 0.94619 0.97843 1.21083 0.92814 0.97940 0.99660 1.21026 1.00061 0.94299 0.96868 1.21441 0.94411 0.99693 1.00450 1.18321 0.90944 0.89736 0.95520 1.84826 1.83812 1.41531 1.20858 1.21198 1.00449 0.93874 0.98601 0.91795 0.77429 0.89056 0.92938 0.81252 0.73560 0.85269 0.85333 0.85514 0.75492 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16 11 O -0.58 -15.86 15.78 5.55 0.09 -15.78 16 12 C 0.04 0.76 5.86 -4.97 -0.03 0.73 16 13 N -0.63 -10.25 5.18 -110.45 -0.57 -10.82 16 14 C 0.14 1.73 2.70 -70.02 -0.19 1.55 16 15 H 0.13 1.34 7.66 -51.93 -0.40 0.94 16 16 C 0.45 5.87 7.44 36.00 0.27 6.14 16 17 O -0.51 -8.28 16.06 -18.75 -0.30 -8.58 16 18 O -0.51 -5.13 13.34 -39.26 -0.52 -5.65 16 19 C -0.05 -0.64 4.88 -104.65 -0.51 -1.15 16 20 C -0.10 -1.18 9.32 -39.56 -0.37 -1.55 16 21 C -0.10 -1.09 10.04 -39.60 -0.40 -1.49 16 22 C -0.14 -1.40 9.99 -39.43 -0.39 -1.80 16 23 C 0.10 1.03 6.70 -39.22 -0.26 0.76 16 24 O -0.50 -4.49 13.50 -19.45 -0.26 -4.75 16 25 C -0.12 -1.32 9.61 -39.44 -0.38 -1.69 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 28 H 0.09 1.40 8.06 -51.93 -0.42 0.99 16 29 H 0.05 0.90 7.62 -51.93 -0.40 0.50 16 30 H 0.36 6.50 6.79 -39.29 -0.27 6.24 16 31 H 0.41 2.45 9.10 45.56 0.41 2.86 16 32 H 0.13 1.64 7.24 -52.49 -0.38 1.26 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.39 1.67 9.06 45.56 0.41 2.08 16 36 H 0.13 1.20 8.03 -52.49 -0.42 0.78 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -35.07 325.66 -5.74 -40.82 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -2.13 Total: 18.05 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.59 Total: 3.95 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.09 Total: -49.09 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.00 Total: -34.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.07 -5.74 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.987 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds