Wall clock time and date at job start Tue Mar 31 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00733 * 2 1 4 4 H 1.48500 * 109.47078 * 240.00111 * 3 2 1 5 5 H 1.48505 * 109.46585 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47705 * 119.99730 * 3 2 1 7 7 C 1.38956 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47473 * 34.99539 * 14 13 12 16 16 C 1.50703 * 109.46742 * 274.99779 * 14 13 12 17 17 O 1.20821 * 120.00452 * 359.97438 * 16 14 13 18 18 O 1.34236 * 119.99666 * 180.02562 * 16 14 13 19 19 C 1.50693 * 109.47182 * 155.00014 * 14 13 12 20 20 C 1.38298 * 119.97178 * 39.72302 * 19 14 13 21 21 C 1.38248 * 120.10758 * 179.72750 * 20 19 14 22 22 C 1.38161 * 120.05653 * 0.54407 * 21 20 19 23 23 C 1.38711 * 119.94678 * 359.73348 * 22 21 20 24 24 O 1.35901 * 120.05788 * 179.97438 * 23 22 21 25 25 C 1.38123 * 119.97618 * 220.00015 * 19 14 13 26 26 H 0.97004 * 119.99642 * 0.02562 * 1 2 3 27 27 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 29 29 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 30 30 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 31 31 H 0.96698 * 116.99591 * 180.02562 * 18 16 14 32 32 H 1.08001 * 119.93980 * 359.97438 * 20 19 14 33 33 H 1.07994 * 119.96649 * 180.25781 * 21 20 19 34 34 H 1.08003 * 120.02683 * 179.69891 * 22 21 20 35 35 H 0.96696 * 113.99846 * 270.02462 * 24 23 22 36 36 H 1.08007 * 120.02416 * 0.02562 * 25 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6961 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0031 12 6 1.2434 -4.8629 0.0032 13 7 2.1980 -5.9796 0.0050 14 6 1.4976 -7.2709 0.0050 15 1 0.5850 -7.1893 -0.5855 16 6 1.1477 -7.6525 1.4203 17 8 1.4511 -6.9239 2.3351 18 8 0.4999 -8.8025 1.6647 19 6 2.3906 -8.3267 -0.5938 20 6 3.7427 -8.3338 -0.3035 21 6 4.5636 -9.3045 -0.8468 22 6 4.0367 -10.2635 -1.6904 23 6 2.6818 -10.2551 -1.9877 24 8 2.1612 -11.1970 -2.8177 25 6 1.8591 -9.2832 -1.4367 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3907 0.0016 28 1 0.6171 -4.9213 -0.8870 29 1 0.6164 -4.9201 0.8930 30 1 2.8322 -5.9119 0.7868 31 1 0.2968 -9.0042 2.5883 32 1 4.1573 -7.5822 0.3519 33 1 5.6184 -9.3104 -0.6153 34 1 4.6793 -11.0187 -2.1184 35 1 2.1663 -10.9447 -3.7511 36 1 0.8039 -9.2743 -1.6670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:59 Heat of formation + Delta-G solvation = -166.225815 kcal Electronic energy + Delta-G solvation = -22820.340694 eV Core-core repulsion = 19075.573062 eV Total energy + Delta-G solvation = -3744.767631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84949 -40.46932 -40.11286 -38.04757 -37.35804 -36.39041 -35.80550 -33.32846 -32.66951 -30.78772 -29.13101 -27.36342 -25.58888 -23.65430 -23.50987 -21.73710 -21.19820 -19.97273 -19.46245 -18.88225 -18.47381 -17.60556 -17.46067 -17.06939 -16.59008 -16.45428 -16.20994 -15.88429 -15.78283 -15.27261 -15.01697 -14.62681 -14.38946 -13.93939 -13.70477 -13.48658 -13.32352 -13.14135 -12.88428 -12.75662 -12.64253 -12.45525 -12.43417 -12.12553 -11.99098 -11.51594 -11.41791 -10.43008 -10.03987 -9.89703 -9.73468 -9.54200 -8.47582 -5.96561 0.22453 0.37099 1.02234 1.39665 1.41655 1.52727 1.95344 2.02611 2.27539 2.53140 2.91620 3.19109 3.28535 3.41977 3.60697 3.83237 4.13971 4.17801 4.21733 4.25550 4.35696 4.44101 4.50399 4.62277 4.88723 5.01736 5.37894 5.41669 5.42251 5.47171 5.48371 5.69604 5.87539 5.96775 6.01597 6.57572 6.84976 6.91672 7.10562 7.52927 8.07966 8.69660 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.003222 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.876668 B = 8688.033972 C = 9146.860389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.570 5.570 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.058 3.942 13 N -0.640 5.640 14 C 0.138 3.862 15 H 0.152 0.848 16 C 0.461 3.539 17 O -0.547 6.547 18 O -0.501 6.501 19 C -0.063 4.063 20 C -0.120 4.120 21 C -0.107 4.107 22 C -0.143 4.143 23 C 0.100 3.900 24 O -0.507 6.507 25 C -0.126 4.126 26 H 0.278 0.722 27 H 0.397 0.603 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.352 0.648 31 H 0.425 0.575 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.411 0.589 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 -21.629 -3.533 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.207 5.207 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.074 4.074 13 N -0.272 5.272 14 C 0.026 3.974 15 H 0.169 0.831 16 C 0.302 3.698 17 O -0.437 6.437 18 O -0.313 6.313 19 C -0.064 4.064 20 C -0.138 4.138 21 C -0.125 4.125 22 C -0.161 4.161 23 C 0.056 3.944 24 O -0.320 6.320 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.231 0.769 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.173 0.827 31 H 0.287 0.713 32 H 0.131 0.869 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.270 0.730 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.304 -21.483 -3.851 21.828 hybrid contribution -0.475 1.195 1.360 1.872 sum -0.171 -20.288 -2.491 20.441 Atomic orbital electron populations 1.69665 1.06845 1.29437 1.50081 1.26052 0.96560 1.02428 0.96122 0.84979 0.77773 0.76548 0.78983 1.19532 1.19406 1.19814 1.19652 0.92774 0.83968 1.50179 0.90230 1.41878 1.09340 1.04619 1.64863 1.20627 0.88204 0.85966 0.82486 1.90497 1.15711 1.87874 1.56686 1.21713 0.94083 0.88119 1.03505 1.60568 1.17348 0.98816 1.50478 1.20408 0.99098 0.88923 0.88984 0.83078 1.24867 0.73071 0.78292 0.93539 1.90773 1.52372 1.52969 1.47585 1.84537 1.69545 1.38918 1.38269 1.19061 0.93617 0.94980 0.98736 1.21126 0.93545 0.98586 1.00576 1.21231 1.00810 0.93852 0.96609 1.21695 0.94765 0.99775 0.99881 1.18420 0.91058 0.89493 0.95453 1.84771 1.83638 1.41220 1.22366 1.21349 1.01403 0.93589 0.98089 0.91222 0.76916 0.85977 0.92030 0.82678 0.71325 0.86886 0.83730 0.83473 0.73005 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 8 H 0.08 4.86 7.16 -2.92 -0.02 4.84 16 9 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 10 C 0.44 21.37 7.82 87.66 0.69 22.05 16 11 O -0.62 -35.03 15.78 -3.08 -0.05 -35.08 16 12 C 0.06 2.02 5.86 85.55 0.50 2.52 16 13 N -0.64 -20.75 5.17 -503.38 -2.60 -23.35 16 14 C 0.14 3.33 2.70 43.42 0.12 3.45 16 15 H 0.15 2.81 7.66 -2.39 -0.02 2.80 16 16 C 0.46 11.50 7.44 71.24 0.53 12.03 16 17 O -0.55 -17.87 16.06 21.98 0.35 -17.51 16 18 O -0.50 -8.99 13.34 -51.47 -0.69 -9.68 16 19 C -0.06 -1.44 4.88 -19.88 -0.10 -1.54 16 20 C -0.12 -2.91 9.32 22.29 0.21 -2.70 16 21 C -0.11 -2.12 10.04 22.25 0.22 -1.90 16 22 C -0.14 -2.52 9.99 22.36 0.22 -2.30 16 23 C 0.10 1.83 6.70 22.51 0.15 1.98 16 24 O -0.51 -7.59 13.50 -92.44 -1.25 -8.84 16 25 C -0.13 -2.42 9.61 22.36 0.21 -2.20 16 26 H 0.28 14.14 8.31 -92.71 -0.77 13.36 16 27 H 0.40 19.53 7.90 -92.70 -0.73 18.80 16 28 H 0.12 3.51 8.05 -2.39 -0.02 3.49 16 29 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 30 H 0.35 12.99 6.79 -89.69 -0.61 12.38 16 31 H 0.43 4.25 9.10 -74.06 -0.67 3.57 16 32 H 0.11 3.04 7.23 -2.91 -0.02 3.02 16 33 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.41 2.25 9.06 -74.06 -0.67 1.58 16 36 H 0.15 2.26 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -76.35 325.65 -1.01 -77.36 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -1.50 Total: 40.05 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 4.04 Total: 12.71 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.94 Total: -104.26 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -1.63 Total: -71.11 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.35 -1.01 -77.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.862 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds