Wall clock time and date at job start Tue Mar 31 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47571 * 2 1 4 4 C 1.50704 * 109.47369 * 239.99487 * 2 1 3 5 5 H 1.07994 * 120.00276 * 264.59040 * 4 2 1 6 6 C 1.37873 * 119.99567 * 84.58827 * 4 2 1 7 7 N 1.31522 * 119.99723 * 186.07766 * 6 4 2 8 8 Si 1.86799 * 120.00326 * 6.07775 * 6 4 2 9 9 H 1.48500 * 109.47271 * 84.68828 * 8 6 4 10 10 H 1.48503 * 109.47048 * 204.68304 * 8 6 4 11 11 H 1.48500 * 109.47259 * 324.68429 * 8 6 4 12 12 N 1.46508 * 109.46955 * 119.99570 * 2 1 3 13 13 C 1.46496 * 119.99811 * 60.00168 * 12 2 1 14 14 S 1.65594 * 119.99856 * 239.99796 * 12 2 1 15 15 O 1.42095 * 106.40497 * 23.54141 * 14 12 2 16 16 O 1.42102 * 106.40041 * 156.46328 * 14 12 2 17 17 N 1.65602 * 107.21884 * 269.99892 * 14 12 2 18 18 C 1.46497 * 120.00189 * 65.00516 * 17 14 12 19 19 H 1.09007 * 110.45182 * 24.29544 * 18 17 14 20 20 C 1.54477 * 110.50950 * 261.69414 * 18 17 14 21 21 O 1.44642 * 104.69483 * 217.47041 * 20 18 17 22 22 C 1.44429 * 105.36825 * 40.34590 * 21 20 18 23 23 C 1.54475 * 104.80252 * 319.56428 * 22 21 20 24 24 H 1.08991 * 110.62684 * 265.27367 * 23 22 21 25 25 O 1.42902 * 110.50973 * 142.62208 * 23 22 21 26 26 H 1.08995 * 109.47721 * 174.33935 * 1 2 3 27 27 H 1.09001 * 109.47216 * 294.34207 * 1 2 3 28 28 H 1.09005 * 109.47310 * 54.33867 * 1 2 3 29 29 H 0.97004 * 119.99812 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47300 * 89.99638 * 13 12 2 31 31 H 1.09000 * 109.47271 * 209.99960 * 13 12 2 32 32 H 1.09001 * 109.47052 * 330.00116 * 13 12 2 33 33 H 0.96999 * 120.00037 * 245.00081 * 17 14 12 34 34 H 1.08992 * 110.37437 * 336.20756 * 20 18 17 35 35 H 1.09006 * 110.37233 * 98.54703 * 20 18 17 36 36 H 1.09004 * 110.37123 * 200.73079 * 22 21 20 37 37 H 1.09007 * 110.46177 * 78.44443 * 22 21 20 38 38 H 0.96699 * 113.99839 * 65.35229 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.2955 -1.7567 -1.1802 6 6 2.1559 -0.0248 -2.4201 7 7 2.4790 -0.6694 -3.5201 8 14 1.8645 1.8196 -2.4699 9 1 3.1124 2.5284 -2.0885 10 1 1.4673 2.2211 -3.8433 11 1 0.7821 2.1756 -1.5175 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9703 0.1143 2.2862 15 8 2.6903 1.4973 2.1192 16 8 2.8226 -0.5644 3.5259 17 7 4.5436 -0.1042 1.8181 18 6 5.0139 0.4529 0.5474 19 1 4.3952 1.2998 0.2506 20 6 5.0113 -0.6313 -0.5529 21 8 6.1913 -0.3556 -1.3426 22 6 7.2163 -0.0019 -0.3885 23 6 6.4955 0.8771 0.6574 24 1 6.6093 1.9336 0.4150 25 8 6.9971 0.6086 1.9683 26 1 -0.3634 -1.0226 -0.1014 27 1 -0.3634 0.4236 0.9363 28 1 -0.3634 0.5991 -0.8350 29 1 2.5657 -0.1871 -4.3572 30 1 2.4155 -2.7376 0.9719 31 1 1.6236 -2.2851 2.5003 32 1 0.6903 -2.3001 0.9847 33 1 5.1539 -0.6010 2.3852 34 1 5.0767 -1.6240 -0.1077 35 1 4.1137 -0.5478 -1.1658 36 1 8.0104 0.5631 -0.8766 37 1 7.6229 -0.8966 0.0832 38 1 7.9237 0.8556 2.0931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622432860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:34 Heat of formation + Delta-G solvation = -183.899392 kcal Electronic energy + Delta-G solvation = -24437.822883 eV Core-core repulsion = 20827.732819 eV Total energy + Delta-G solvation = -3610.090064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73775 -38.41533 -38.01870 -37.13370 -36.95558 -35.48554 -34.50803 -31.63706 -30.27728 -29.08206 -27.32495 -26.93655 -24.00617 -22.47607 -22.08705 -20.59905 -19.25141 -18.89868 -18.44242 -18.23988 -17.54566 -16.93471 -16.62592 -16.25538 -16.11477 -15.68908 -15.36641 -14.86858 -14.49957 -14.39660 -14.22592 -14.07778 -13.61768 -13.54519 -13.40679 -13.21936 -13.07892 -13.01026 -12.84592 -12.63780 -12.52304 -12.21287 -12.12972 -12.09669 -11.69955 -11.20470 -11.18162 -10.81544 -10.52931 -10.36921 -9.71677 -8.25271 -6.24260 -0.36812 1.33547 1.42063 1.47334 1.88385 2.34936 2.48367 2.95582 3.09848 3.25986 3.43071 3.49815 3.78846 3.95503 4.06166 4.19854 4.28340 4.42608 4.50573 4.73012 4.75597 4.80688 4.84061 4.87252 4.97201 5.03022 5.12974 5.33615 5.40542 5.52518 5.58426 5.85551 5.89533 6.16476 6.40011 6.79303 6.87145 7.35938 8.87624 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.010406 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.825175 B = 2690.007910 C = 3918.335391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.235 3.765 3 H 0.040 0.960 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.048 3.952 7 N -0.917 5.917 8 Si 0.880 3.120 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.245 1.245 12 N -0.991 5.991 13 C 0.095 3.905 14 S 2.794 3.206 15 O -1.013 7.013 16 O -1.002 7.002 17 N -1.092 6.092 18 C 0.126 3.874 19 H 0.086 0.914 20 C 0.010 3.990 21 O -0.391 6.391 22 C 0.009 3.991 23 C 0.076 3.924 24 H 0.092 0.908 25 O -0.558 6.558 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.427 0.573 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 1.257 8.495 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.130 3.870 3 H 0.058 0.942 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.153 4.153 7 N -0.556 5.556 8 Si 0.705 3.295 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.168 1.168 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.803 3.197 15 O -0.997 6.997 16 O -0.987 6.987 17 N -0.854 5.854 18 C 0.017 3.983 19 H 0.104 0.896 20 C -0.067 4.067 21 O -0.309 6.309 22 C -0.068 4.068 23 C 0.015 3.985 24 H 0.110 0.890 25 O -0.367 6.367 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.712 1.647 8.832 11.215 hybrid contribution 0.768 0.576 -0.589 1.126 sum 7.480 2.223 8.242 11.350 Atomic orbital electron populations 1.22210 0.96610 1.02042 0.99925 1.18949 0.92978 0.92002 0.83120 0.94172 1.21169 1.42951 0.98141 0.92160 0.91552 1.25324 0.94412 1.00240 0.95363 1.69966 1.48476 1.37225 0.99890 0.86790 0.80561 0.83982 0.78136 1.19256 1.21079 1.16844 1.57553 1.65095 1.22673 1.37890 1.21460 1.02369 0.79899 1.01286 1.01332 0.72946 0.72949 0.72471 1.93528 1.84740 1.34412 1.86986 1.93528 1.86247 1.76019 1.42869 1.55337 1.29380 1.70540 1.30178 1.22139 0.96027 0.96371 0.83811 0.89555 1.24770 0.91063 0.96937 0.93976 1.89247 1.21746 1.89463 1.30486 1.24385 0.92220 0.99315 0.90843 1.23268 0.91677 0.99631 0.83965 0.88971 1.86380 1.33670 1.87585 1.29051 0.91607 0.93726 0.93093 0.92408 0.92977 0.90280 0.89965 0.73627 0.92042 0.85128 0.86342 0.90483 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 8.81 71.98 0.63 -5.11 16 2 C 0.23 9.98 2.18 44.24 0.10 10.08 16 3 H 0.04 1.83 4.67 -2.39 -0.01 1.82 16 4 C -0.50 -24.08 6.07 25.60 0.16 -23.92 16 5 H 0.07 3.42 7.58 -2.91 -0.02 3.40 16 6 C 0.05 2.46 4.59 84.65 0.39 2.85 16 7 N -0.92 -50.79 13.96 21.45 0.30 -50.50 16 8 Si 0.88 40.13 26.28 68.60 1.80 41.94 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.24 -10.61 5.95 99.48 0.59 -10.02 16 12 N -0.99 -37.10 3.12 -520.45 -1.62 -38.72 16 13 C 0.10 3.02 9.75 127.77 1.25 4.27 16 14 S 2.79 103.86 6.13 -56.49 -0.35 103.51 16 15 O -1.01 -43.51 16.08 -128.00 -2.06 -45.57 16 16 O -1.00 -38.55 16.74 -128.00 -2.14 -40.69 16 17 N -1.09 -35.23 5.25 -165.17 -0.87 -36.09 16 18 C 0.13 4.27 3.80 46.01 0.17 4.45 16 19 H 0.09 3.28 7.57 -2.38 -0.02 3.26 16 20 C 0.01 0.38 7.29 72.48 0.53 0.91 16 21 O -0.39 -14.47 11.65 -148.98 -1.74 -16.20 16 22 C 0.01 0.23 7.38 72.48 0.54 0.77 16 23 C 0.08 1.91 4.49 31.61 0.14 2.06 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 O -0.56 -11.40 11.71 -148.98 -1.75 -13.14 16 26 H 0.06 2.38 6.91 -2.39 -0.02 2.36 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 2.00 6.46 -2.38 -0.02 1.99 16 29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.08 2.27 7.02 -2.39 -0.02 2.25 16 32 H 0.08 2.50 6.55 -2.39 -0.02 2.48 16 33 H 0.43 12.03 7.71 -96.75 -0.75 11.28 16 34 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 35 H 0.13 5.99 3.74 -2.38 -0.01 5.98 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 1.71 8.08 -2.38 -0.02 1.69 16 38 H 0.40 3.89 9.12 -74.06 -0.68 3.21 16 Total: -1.00 -65.02 309.74 -4.94 -69.97 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.43 Total: 29.15 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 3.90 Total: -3.65 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -2.19 Total: -125.31 kcal Atomic # 8 Polarization: -107.93 SS G_CDS: -7.68 Total: -115.61 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.80 Total: 41.94 kcal Atomic # 16 Polarization: 103.86 SS G_CDS: -0.35 Total: 103.51 kcal Total: -65.02 -4.94 -69.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622432860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.933 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds