Wall clock time and date at job start Tue Mar 31 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47314 * 205.25678 * 3 2 1 5 5 C 1.48566 * 110.99415 * 285.41849 * 4 3 2 6 6 C 1.54381 * 104.58976 * 200.95801 * 5 4 3 7 7 C 1.54255 * 105.06122 * 23.85394 * 6 5 4 8 8 C 1.48556 * 110.99922 * 169.99980 * 4 3 2 9 9 H 1.08997 * 110.41330 * 40.26048 * 8 4 3 10 10 C 1.50700 * 110.41271 * 277.81325 * 8 4 3 11 11 O 1.21277 * 119.99612 * 0.02562 * 10 8 4 12 12 N 1.34775 * 119.99781 * 180.02562 * 10 8 4 13 13 C 1.46497 * 120.00152 * 0.02562 * 12 10 8 14 14 C 1.46500 * 119.99595 * 180.02562 * 12 10 8 15 15 C 1.53003 * 109.47263 * 90.00151 * 14 12 10 16 16 N 1.46500 * 109.47263 * 179.97438 * 15 14 12 17 17 C 1.46500 * 119.99857 * 270.00072 * 16 15 14 18 18 C 1.36936 * 119.99900 * 89.99961 * 16 15 14 19 19 H 1.08000 * 120.00466 * 20.36241 * 18 16 15 20 20 C 1.38814 * 119.99799 * 200.36176 * 18 16 15 21 21 N 1.31620 * 120.00318 * 14.99215 * 20 18 16 22 22 Si 1.86799 * 120.00159 * 194.98530 * 20 18 16 23 23 H 1.48501 * 109.46855 * 85.00166 * 22 20 18 24 24 H 1.48494 * 109.47528 * 205.00290 * 22 20 18 25 25 H 1.48500 * 109.47340 * 325.01006 * 22 20 18 26 26 H 4.40888 * 5.52271 * 179.97438 * 4 1 2 27 27 H 1.09007 * 109.46920 * 325.25772 * 3 2 1 28 28 H 1.08996 * 109.46891 * 85.25233 * 3 2 1 29 29 H 1.09001 * 110.41341 * 319.73762 * 5 4 3 30 30 H 1.09001 * 110.41213 * 82.18208 * 5 4 3 31 31 H 1.08996 * 110.32206 * 264.95453 * 6 5 4 32 32 H 1.08999 * 110.40626 * 142.79290 * 6 5 4 33 33 H 1.08999 * 110.32616 * 241.10126 * 7 6 5 34 34 H 1.09004 * 110.32447 * 118.89751 * 7 6 5 35 35 H 1.08999 * 109.46631 * 90.00222 * 13 12 10 36 36 H 1.09001 * 109.46982 * 209.99618 * 13 12 10 37 37 H 1.08995 * 109.47310 * 329.99674 * 13 12 10 38 38 H 1.09003 * 109.47138 * 210.00141 * 14 12 10 39 39 H 1.09001 * 109.47354 * 330.00197 * 14 12 10 40 40 H 1.09004 * 109.46583 * 299.99768 * 15 14 12 41 41 H 1.09001 * 109.46898 * 59.99766 * 15 14 12 42 42 H 1.09003 * 109.46819 * 95.09455 * 17 16 15 43 43 H 1.09001 * 109.46838 * 215.09367 * 17 16 15 44 44 H 1.09000 * 109.46874 * 335.09685 * 17 16 15 45 45 H 0.96994 * 120.00573 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 1.2535 0.5909 5 6 2.9644 2.3889 -0.3518 6 6 3.9646 3.4569 0.1406 7 6 5.0408 2.6705 0.9170 8 6 4.6004 1.1935 0.8286 9 1 5.1004 0.6968 -0.0029 10 6 4.8941 0.4791 2.1226 11 8 3.9832 0.0512 2.7993 12 7 6.1691 0.3158 2.5278 13 6 7.2694 0.8332 1.7105 14 6 6.4547 -0.3792 3.7854 15 6 6.6184 -1.8763 3.5151 16 7 6.9045 -2.5712 4.7727 17 6 8.2906 -2.7486 5.2125 18 6 5.8764 -3.0548 5.5370 19 1 4.9075 -3.2273 5.0921 20 6 6.0795 -3.3235 6.8836 21 7 7.1434 -2.8490 7.4963 22 14 4.8427 -4.3582 7.8265 23 1 5.1559 -5.7976 7.6383 24 1 4.9138 -4.0209 9.2709 25 1 3.4750 -4.0790 7.3197 26 1 -1.0502 -0.0002 -0.0003 27 1 3.0097 -0.8437 0.5857 28 1 3.0093 -0.0842 -1.0241 29 1 3.2084 2.0793 -1.3680 30 1 1.9451 2.7722 -0.3046 31 1 3.4657 4.1675 0.7995 32 1 4.4128 3.9769 -0.7061 33 1 5.0702 2.9952 1.9572 34 1 6.0170 2.8031 0.4505 35 1 7.4965 1.8556 2.0124 36 1 8.1514 0.2084 1.8513 37 1 6.9789 0.8204 0.6601 38 1 7.3746 0.0147 4.2175 39 1 5.6306 -0.2237 4.4817 40 1 5.6983 -2.2701 3.0831 41 1 7.4424 -2.0317 2.8188 42 1 8.5596 -1.9455 5.8987 43 1 8.3909 -3.7084 5.7193 44 1 8.9525 -2.7237 4.3468 45 1 7.2855 -3.0370 8.4371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667580259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:49 Heat of formation + Delta-G solvation = 66.485607 kcal Electronic energy + Delta-G solvation = -24142.804430 eV Core-core repulsion = 20777.512774 eV Total energy + Delta-G solvation = -3365.291656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.32729 -38.15488 -35.92600 -34.90394 -34.07949 -31.53938 -31.28456 -29.94253 -28.10912 -26.51782 -26.11761 -25.79221 -23.79464 -21.84628 -21.29469 -20.36680 -18.85473 -18.28856 -17.10398 -16.62293 -16.30140 -15.84555 -15.19296 -14.73440 -14.55962 -14.45594 -14.36118 -13.62549 -13.42078 -13.14832 -12.90551 -12.79593 -12.62446 -12.48100 -12.25491 -12.10521 -11.83519 -11.70834 -11.37614 -11.24414 -10.86348 -10.83715 -10.76749 -10.46961 -10.46321 -10.15433 -10.09242 -9.86543 -9.72514 -9.40289 -8.63561 -8.55990 -8.28025 -6.71925 -5.66652 -3.09522 2.62684 2.86177 2.94770 3.22565 3.46598 3.51757 3.55129 3.99770 4.25056 4.36671 4.51069 4.59854 4.71647 4.83823 4.92192 5.14642 5.18649 5.24558 5.36608 5.40459 5.44015 5.51337 5.55250 5.64599 5.68815 5.71566 5.82616 5.86961 5.91120 5.95380 6.28896 6.32032 6.50808 6.70005 6.73300 6.73958 6.83432 7.10871 7.39708 7.62890 7.73513 7.75529 7.91168 8.45010 8.58572 9.30509 9.93105 10.40019 11.39100 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003991 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.129830 B = 7013.635787 C = 8188.936116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.154 3.846 4 N -0.483 5.483 5 C 0.033 3.967 6 C -0.123 4.123 7 C -0.113 4.113 8 C 0.045 3.955 9 H 0.077 0.923 10 C 0.514 3.486 11 O -0.509 6.509 12 N -0.614 5.614 13 C 0.079 3.921 14 C 0.095 3.905 15 C 0.145 3.855 16 N -0.599 5.599 17 C 0.163 3.837 18 C -0.250 4.250 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.217 0.783 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.044 0.956 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 12.205 -19.435 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.169 4.169 3 C 0.027 3.973 4 N -0.207 5.207 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.066 4.066 9 H 0.095 0.905 10 C 0.299 3.701 11 O -0.382 6.382 12 N -0.350 5.350 13 C -0.065 4.065 14 C -0.029 4.029 15 C 0.016 3.984 16 N -0.322 5.322 17 C 0.018 3.982 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.197 4.197 21 N -0.556 5.556 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.233 0.767 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.838 11.988 -18.366 22.115 hybrid contribution -0.259 -0.614 -0.094 0.673 sum -3.097 11.374 -18.460 21.902 Atomic orbital electron populations 1.24813 0.95797 1.00033 1.01509 1.22658 0.93940 1.00578 0.99737 1.19164 0.85922 0.93970 0.98269 1.65011 1.12053 1.03057 1.40599 1.23196 1.00748 0.91670 0.93870 1.22296 0.96088 0.97717 0.99971 1.22306 0.98783 0.91780 1.02233 1.22631 0.89853 0.97574 0.96587 0.90549 1.20136 0.82777 0.80177 0.87017 1.90763 1.44078 1.48148 1.55254 1.48053 1.05268 1.57506 1.24153 1.21811 0.90767 0.99191 0.94753 1.22598 1.01764 0.94721 0.83867 1.21097 0.98328 0.89827 0.89133 1.43994 1.03179 1.63304 1.21727 1.20819 0.82516 1.00948 0.93883 1.19275 0.92478 1.35941 0.90287 0.91140 1.24948 0.97901 1.00704 0.96151 1.70076 1.28958 1.46688 1.09887 0.86265 0.81080 0.80299 0.78961 1.21516 1.21770 1.20420 0.76659 0.87833 0.92380 0.93559 0.89743 0.90648 0.90913 0.90281 0.90200 0.92876 0.90934 0.91800 0.91513 0.89696 0.93637 0.94752 0.95267 0.93731 0.98481 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 19.25 29.55 0.57 -1.85 16 2 C -0.17 -2.28 13.25 -37.12 -0.49 -2.77 16 3 C 0.15 1.96 5.13 -6.61 -0.03 1.93 16 4 N -0.48 -6.29 4.57 -226.97 -1.04 -7.33 16 5 C 0.03 0.32 6.10 -2.18 -0.01 0.30 16 6 C -0.12 -0.99 7.00 -25.35 -0.18 -1.17 16 7 C -0.11 -1.04 5.39 -25.35 -0.14 -1.18 16 8 C 0.05 0.54 1.74 -67.22 -0.12 0.42 16 9 H 0.08 0.74 7.16 -51.93 -0.37 0.37 16 10 C 0.51 8.47 6.69 -10.99 -0.07 8.39 16 11 O -0.51 -11.06 15.49 5.56 0.09 -10.97 16 12 N -0.61 -9.44 2.87 -181.57 -0.52 -9.96 16 13 C 0.08 0.80 9.06 59.85 0.54 1.34 16 14 C 0.09 1.86 5.73 -4.04 -0.02 1.84 16 15 C 0.14 3.11 6.03 -4.04 -0.02 3.09 16 16 N -0.60 -15.58 2.93 -181.11 -0.53 -16.11 16 17 C 0.16 4.05 9.02 59.85 0.54 4.59 16 18 C -0.25 -7.23 9.68 -15.06 -0.15 -7.37 16 19 H 0.07 2.06 7.86 -52.49 -0.41 1.65 16 20 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 21 N -0.91 -27.13 10.67 55.49 0.59 -26.54 16 22 Si 0.90 22.91 29.58 -169.99 -5.03 17.88 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H 0.22 1.75 7.80 -54.08 -0.42 1.33 16 27 H 0.10 1.52 7.40 -51.93 -0.38 1.14 16 28 H 0.06 0.58 7.77 -51.93 -0.40 0.18 16 29 H 0.05 0.38 7.75 -51.93 -0.40 -0.03 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.08 0.53 7.26 -51.93 -0.38 0.15 16 35 H 0.05 0.47 7.98 -51.93 -0.41 0.05 16 36 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.06 0.50 5.99 -51.93 -0.31 0.18 16 38 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.08 2.02 7.42 -51.93 -0.39 1.63 16 40 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 41 H 0.03 0.65 7.86 -51.93 -0.41 0.25 16 42 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 43 H 0.04 1.19 7.21 -51.93 -0.37 0.82 16 44 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -34.91 366.02 -8.12 -43.03 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.52 Total: -3.00 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.33 Total: 7.48 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -1.50 Total: -59.94 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.91 -8.12 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667580259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.517 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds