Wall clock time and date at job start Tue Mar 31 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34644 * 116.99852 * 2 1 4 4 O 1.21511 * 119.99917 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99995 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99796 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.46675 * 180.02562 * 6 5 3 8 8 O 1.21287 * 120.00463 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99640 * 180.02562 * 7 6 5 10 10 C 1.39921 * 119.99604 * 174.77915 * 9 7 6 11 11 C 1.38964 * 120.04023 * 326.32607 * 10 9 7 12 12 C 1.38159 * 120.06557 * 180.02562 * 11 10 9 13 13 C 1.38166 * 120.13636 * 359.69525 * 12 11 10 14 14 C 1.38904 * 120.07777 * 0.55855 * 13 12 11 15 15 O 1.35746 * 120.04003 * 179.74157 * 14 13 12 16 16 C 1.34834 * 117.00326 * 173.82630 * 15 14 13 17 17 H 1.07998 * 119.99812 * 354.58573 * 16 15 14 18 18 C 1.38651 * 120.00179 * 174.59583 * 16 15 14 19 19 N 1.31558 * 119.99950 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00133 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47147 * 90.00028 * 20 18 16 22 22 H 1.48496 * 109.47078 * 210.00015 * 20 18 16 23 23 H 1.48500 * 109.46874 * 329.99681 * 20 18 16 24 24 C 1.38716 * 120.03185 * 146.34622 * 10 9 7 25 25 H 1.09001 * 109.46912 * 60.00280 * 1 2 3 26 26 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47535 * 299.99943 * 1 2 3 28 28 H 0.96997 * 119.99870 * 0.02562 * 5 3 2 29 29 H 1.09000 * 109.47010 * 60.00296 * 6 5 3 30 30 H 1.09001 * 109.47544 * 300.00087 * 6 5 3 31 31 H 0.96996 * 119.99935 * 354.77803 * 9 7 6 32 32 H 1.07991 * 119.96495 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.92973 * 179.97438 * 12 11 10 34 34 H 1.08005 * 119.96067 * 180.29648 * 13 12 11 35 35 H 0.97000 * 120.00184 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.06855 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0000 7 6 5.5682 2.3781 0.0001 8 8 6.0318 1.2574 0.0011 9 7 6.3892 3.4471 0.0001 10 6 7.7723 3.2668 0.1105 11 6 8.2790 2.2229 0.8752 12 6 9.6446 2.0447 0.9850 13 6 10.5105 2.8994 0.3302 14 6 10.0105 3.9479 -0.4314 15 8 10.8621 4.7903 -1.0700 16 6 10.3140 5.7065 -1.8936 17 1 9.2519 5.6904 -2.0887 18 6 11.1139 6.6691 -2.4901 19 7 12.4077 6.6890 -2.2522 20 14 10.3547 7.9380 -3.6316 21 1 9.9401 9.1268 -2.8444 22 1 11.3526 8.3444 -4.6535 23 1 9.1680 7.3512 -4.3045 24 6 8.6393 4.1302 -0.5429 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9374 0.4568 0.0005 29 1 3.7809 3.1332 0.8895 30 1 3.7816 3.1321 -0.8905 31 1 6.0211 4.3413 -0.0763 32 1 7.6045 1.5503 1.3841 33 1 10.0360 1.2330 1.5801 34 1 11.5775 2.7546 0.4141 35 1 12.9673 7.3626 -2.6692 36 1 8.2481 4.9427 -1.1372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048937221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:16 Heat of formation + Delta-G solvation = -133.334382 kcal Electronic energy + Delta-G solvation = -22271.617849 eV Core-core repulsion = 18528.276497 eV Total energy + Delta-G solvation = -3743.341352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90056 -41.32692 -40.36835 -38.30849 -37.66157 -35.88501 -35.65716 -34.22703 -31.36453 -30.58037 -29.35965 -27.76208 -27.20274 -23.81623 -23.50651 -22.38331 -21.61735 -20.38654 -19.68828 -19.33912 -18.09503 -17.84242 -17.76703 -17.18192 -16.92004 -16.62226 -16.21891 -15.94121 -15.69656 -15.49382 -15.09968 -14.81152 -14.61021 -14.38745 -14.18344 -13.72108 -13.52174 -13.24128 -12.95751 -12.77162 -12.69204 -12.40795 -12.10457 -11.89661 -11.81079 -11.55360 -11.29421 -11.06597 -10.71963 -10.47037 -9.37239 -8.89226 -8.45611 -6.14316 0.35245 0.69437 0.96036 1.37559 1.41002 1.48116 1.54569 1.63075 1.98678 2.18894 2.83895 3.16783 3.20639 3.43145 3.50771 4.12734 4.22329 4.24027 4.33194 4.36005 4.39295 4.43948 4.62837 4.69722 4.70401 4.94310 5.02993 5.11708 5.28653 5.36876 5.43008 5.65640 5.67759 6.02367 6.14177 6.20311 6.34234 6.93502 6.99016 7.14692 7.78573 8.77329 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002956 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.574965 B = 9470.388089 C =10632.347587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.651 3.349 4 O -0.599 6.599 5 N -0.696 5.696 6 C 0.127 3.873 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.653 5.653 10 C 0.186 3.814 11 C -0.197 4.197 12 C -0.052 4.052 13 C -0.213 4.213 14 C 0.132 3.868 15 O -0.227 6.227 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.252 1.252 24 C -0.257 4.257 25 H 0.063 0.937 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.421 0.579 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.428 0.572 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.118 0.882 35 H 0.272 0.728 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.594 -9.119 5.016 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.404 3.596 4 O -0.490 6.490 5 N -0.358 5.358 6 C 0.002 3.998 7 C 0.302 3.698 8 O -0.422 6.422 9 N -0.299 5.299 10 C 0.092 3.908 11 C -0.218 4.218 12 C -0.071 4.071 13 C -0.233 4.233 14 C 0.081 3.919 15 O -0.133 6.133 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.176 1.176 24 C -0.279 4.279 25 H 0.082 0.918 26 H 0.153 0.847 27 H 0.083 0.917 28 H 0.259 0.741 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.172 0.828 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.308 -9.330 4.973 23.787 hybrid contribution 0.222 0.836 -0.597 1.051 sum -21.086 -8.494 4.376 23.150 Atomic orbital electron populations 1.23546 0.72363 1.05734 1.02848 1.86272 1.26098 1.29868 1.86627 1.18031 0.83099 0.82440 0.75989 1.90998 1.65215 1.35696 1.57130 1.44219 1.03148 1.10781 1.77670 1.21063 0.86135 0.84994 1.07650 1.20866 0.89492 0.84311 0.75140 1.90737 1.77661 1.24676 1.49131 1.43242 1.03805 1.11111 1.71757 1.17373 0.82484 0.95931 0.95027 1.20874 0.95654 1.01090 1.04133 1.20928 0.92181 0.97369 0.96581 1.20505 1.00552 0.97468 1.04756 1.19628 0.89735 0.90752 0.91806 1.83988 1.34193 1.41781 1.53331 1.21791 0.95327 1.08788 1.22853 0.87889 1.26578 0.95788 0.99798 0.99848 1.70184 1.05812 1.35629 1.44131 0.84592 0.78061 0.76848 0.76776 1.18649 1.20002 1.17567 1.20863 0.92387 1.05951 1.08682 0.91809 0.84733 0.91673 0.74058 0.85299 0.85795 0.73255 0.84719 0.82830 0.86422 0.91866 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.38 -6.81 10.62 -55.53 -0.59 -7.40 16 3 C 0.65 13.77 8.75 129.79 1.14 14.91 16 4 O -0.60 -15.39 16.13 19.81 0.32 -15.07 16 5 N -0.70 -12.94 5.53 -594.60 -3.29 -16.23 16 6 C 0.13 2.01 6.16 85.63 0.53 2.54 16 7 C 0.51 11.46 7.64 87.66 0.67 12.13 16 8 O -0.55 -15.83 13.37 -3.05 -0.04 -15.87 16 9 N -0.65 -15.49 5.34 -303.54 -1.62 -17.11 16 10 C 0.19 6.27 6.27 38.14 0.24 6.51 16 11 C -0.20 -6.58 8.66 22.43 0.19 -6.38 16 12 C -0.05 -1.77 10.03 22.23 0.22 -1.55 16 13 C -0.21 -8.89 9.99 22.41 0.22 -8.67 16 14 C 0.13 6.36 6.64 22.56 0.15 6.51 16 15 O -0.23 -13.22 9.76 -22.74 -0.22 -13.44 16 16 C -0.41 -23.04 9.44 67.92 0.64 -22.40 16 17 H 0.10 5.20 5.30 -2.91 -0.02 5.18 16 18 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 19 N -0.92 -55.30 13.67 21.61 0.30 -55.00 16 20 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 24 C -0.26 -10.54 9.04 22.51 0.20 -10.33 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.13 0.62 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.42 7.90 7.55 -92.71 -0.70 7.20 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.43 7.21 8.82 -92.71 -0.82 6.40 16 32 H 0.14 4.16 6.43 -2.92 -0.02 4.14 16 33 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.13 5.26 5.72 -2.91 -0.02 5.24 16 Total: -1.00 -76.76 322.89 2.39 -74.37 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.36 Total: 28.15 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.87 Total: -5.76 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -4.61 Total: -88.34 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.53 Total: -51.77 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -76.76 2.39 -74.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048937221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.967 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds