Wall clock time and date at job start Tue Mar 31 2020 04:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34225 * 116.99842 * 2 1 4 4 O 1.20825 * 120.00283 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00007 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47112 * 299.99975 * 5 3 2 7 7 C 1.52999 * 109.47023 * 59.99687 * 5 3 2 8 8 C 1.50703 * 109.47243 * 295.00351 * 7 5 3 9 9 H 1.07998 * 119.99920 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00173 * 180.02562 * 8 7 5 11 11 N 1.31515 * 120.00408 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99845 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46935 * 90.00492 * 12 10 8 14 14 H 1.48500 * 109.46966 * 210.00023 * 12 10 8 15 15 H 1.48493 * 109.47267 * 330.00616 * 12 10 8 16 16 C 1.50692 * 109.47224 * 179.97438 * 5 3 2 17 17 C 1.38254 * 119.92917 * 299.99644 * 16 5 3 18 18 C 1.38241 * 120.14846 * 179.97438 * 17 16 5 19 19 C 1.38563 * 119.99911 * 0.02765 * 18 17 16 20 20 O 1.35998 * 120.07188 * 180.02562 * 19 18 17 21 21 C 1.42891 * 117.00128 * 359.97230 * 20 19 18 22 22 C 1.39154 * 119.85519 * 359.97438 * 19 18 17 23 23 O 1.35994 * 120.07375 * 180.02562 * 22 19 18 24 24 C 1.42903 * 116.99970 * 179.97438 * 23 22 19 25 25 C 1.38248 * 119.92826 * 120.29668 * 16 5 3 26 26 H 1.09001 * 109.47004 * 60.00131 * 1 2 3 27 27 H 1.08993 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46845 * 300.00172 * 1 2 3 29 29 H 1.08998 * 109.47329 * 55.00105 * 7 5 3 30 30 H 1.09002 * 109.47391 * 175.00152 * 7 5 3 31 31 H 0.96991 * 120.00458 * 179.97438 * 11 10 8 32 32 H 1.08003 * 119.92661 * 0.02562 * 17 16 5 33 33 H 1.08004 * 120.00294 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47425 * 300.00405 * 21 20 19 35 35 H 1.09002 * 109.47647 * 60.00392 * 21 20 19 36 36 H 1.09001 * 109.47042 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47382 * 300.00030 * 24 23 22 38 38 H 1.09001 * 109.46938 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.46926 * 60.00137 * 24 23 22 40 40 H 1.07998 * 119.99814 * 0.02562 * 25 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9565 0.7806 0.8891 7 6 4.1129 0.5815 -1.2501 8 6 3.7908 -0.8895 -1.1899 9 1 3.2506 -1.2898 -0.3448 10 6 4.1865 -1.7243 -2.2133 11 7 3.9058 -3.0081 -2.1606 12 14 5.1214 -1.0320 -3.6749 13 1 6.5798 -1.0861 -3.4003 14 1 4.8153 -1.8370 -4.8847 15 1 4.7125 0.3774 -3.9016 16 6 3.9936 2.7200 -0.0011 17 6 3.6144 3.5510 -1.0388 18 6 4.0033 4.8776 -1.0436 19 6 4.7755 5.3769 -0.0071 20 8 5.1586 6.6818 -0.0100 21 6 4.7296 7.4813 -1.1139 22 6 5.1573 4.5404 1.0374 23 8 5.9147 5.0259 2.0572 24 6 6.2686 4.1100 3.0955 25 6 4.7692 3.2103 1.0330 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.6545 1.0177 -2.1376 30 1 5.1937 0.7152 -1.2965 31 1 4.1839 -3.5954 -2.8807 32 1 3.0122 3.1632 -1.8472 33 1 3.7054 5.5248 -1.8553 34 1 5.1185 7.0598 -2.0407 35 1 3.6402 7.4959 -1.1504 36 1 5.1029 8.4982 -0.9927 37 1 5.3631 3.7222 3.5622 38 1 6.8709 4.6247 3.8442 39 1 6.8414 3.2848 2.6724 40 1 5.0685 2.5577 1.8398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096517582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:12 Heat of formation + Delta-G solvation = -152.003612 kcal Electronic energy + Delta-G solvation = -24094.512258 eV Core-core repulsion = 20453.901691 eV Total energy + Delta-G solvation = -3640.610567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88716 -41.15788 -39.38286 -38.49405 -37.14560 -35.70821 -33.86883 -31.38227 -30.86070 -28.90261 -28.35220 -28.04830 -26.76281 -23.80797 -23.35723 -22.92400 -21.12769 -19.48370 -18.96189 -18.53519 -17.97884 -17.70353 -17.14834 -17.05013 -16.90766 -16.12503 -16.11296 -15.71578 -15.43826 -15.28346 -14.79830 -14.71431 -14.19179 -14.02502 -13.71024 -13.46576 -13.37805 -13.15524 -12.94372 -12.75912 -12.47423 -12.36736 -12.08852 -12.05532 -12.03095 -11.71907 -11.62723 -11.48943 -11.26928 -11.22810 -10.67601 -9.70197 -8.76072 -8.18339 -6.19995 0.25068 0.39788 1.29429 1.38273 1.41237 1.49892 1.99855 2.35429 2.37223 2.41507 2.74479 3.15649 3.60677 3.77088 4.00390 4.05132 4.20411 4.29207 4.33158 4.37656 4.38053 4.42484 4.44052 4.44267 4.51532 4.54336 4.69497 4.72404 4.74785 4.77078 5.04453 5.14583 5.20348 5.28475 5.51930 5.61180 5.63631 5.67907 6.10658 6.37463 6.60623 6.89596 6.94079 7.41836 8.97202 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.005006 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.422996 B = 5591.926904 C = 6077.596375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.479 3.521 4 O -0.537 6.537 5 C -0.025 4.025 6 H 0.118 0.882 7 C 0.005 3.995 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.016 3.984 11 N -0.944 5.944 12 Si 0.926 3.074 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.252 1.252 16 C -0.076 4.076 17 C -0.096 4.096 18 C -0.169 4.169 19 C 0.086 3.914 20 O -0.326 6.326 21 C 0.017 3.983 22 C 0.085 3.915 23 O -0.325 6.325 24 C 0.016 3.984 25 C -0.161 4.161 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 16.889 5.395 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.324 3.676 4 O -0.428 6.428 5 C -0.044 4.044 6 H 0.136 0.864 7 C -0.032 4.032 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.181 4.181 11 N -0.585 5.585 12 Si 0.751 3.249 13 H -0.192 1.192 14 H -0.214 1.214 15 H -0.176 1.176 16 C -0.076 4.076 17 C -0.115 4.115 18 C -0.187 4.187 19 C 0.041 3.959 20 O -0.240 6.240 21 C -0.078 4.078 22 C 0.040 3.960 23 O -0.239 6.239 24 C -0.078 4.078 25 C -0.179 4.179 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.176 0.824 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.172 17.307 5.475 18.190 hybrid contribution -0.197 -0.605 -0.960 1.151 sum 0.976 16.702 4.515 17.329 Atomic orbital electron populations 1.23441 0.76314 1.04716 1.02190 1.86834 1.23772 1.32496 1.82807 1.23719 0.92215 0.80969 0.70682 1.90568 1.67728 1.36841 1.47674 1.19919 0.87365 0.93453 1.03650 0.86450 1.19513 0.97131 0.94587 0.91962 1.21400 1.35015 0.91618 1.06941 0.91850 1.25703 0.96834 0.94888 1.00698 1.70027 1.49049 1.05006 1.34446 0.86021 0.79828 0.79535 0.79524 1.19208 1.21449 1.17564 1.19210 0.99086 0.93795 0.95542 1.20739 0.99172 0.93331 0.98217 1.21178 1.01559 0.96532 0.99450 1.18386 0.98700 0.84472 0.94341 1.86113 1.72652 1.17811 1.47461 1.23355 1.00829 0.95525 0.88050 1.18262 0.96910 0.91351 0.89513 1.86112 1.66329 1.39688 1.31782 1.23362 1.01205 0.94386 0.88895 1.21050 1.02276 0.93824 1.00755 0.92409 0.86731 0.91311 0.96309 0.94235 0.92798 0.86639 0.82369 0.91794 0.91934 0.86065 0.92028 0.85925 0.91885 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.05 16 2 O -0.34 -14.44 8.17 -51.36 -0.42 -14.86 16 3 C 0.48 19.67 7.10 71.24 0.51 20.18 16 4 O -0.54 -22.44 14.85 21.97 0.33 -22.12 16 5 C -0.02 -0.97 2.45 -12.29 -0.03 -1.00 16 6 H 0.12 4.28 7.87 -2.39 -0.02 4.26 16 7 C 0.01 0.25 3.24 29.85 0.10 0.34 16 8 C -0.51 -27.52 8.61 25.60 0.22 -27.30 16 9 H 0.06 3.70 6.61 -2.91 -0.02 3.69 16 10 C 0.02 0.89 5.47 84.65 0.46 1.35 16 11 N -0.94 -57.01 13.96 21.45 0.30 -56.72 16 12 Si 0.93 42.88 27.47 68.60 1.88 44.77 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 16 C -0.08 -2.67 4.40 -19.86 -0.09 -2.75 16 17 C -0.10 -3.28 7.97 22.27 0.18 -3.10 16 18 C -0.17 -4.91 9.04 22.35 0.20 -4.70 16 19 C 0.09 2.62 6.70 22.57 0.15 2.77 16 20 O -0.33 -8.91 10.28 -79.67 -0.82 -9.73 16 21 C 0.02 0.29 9.81 113.37 1.11 1.40 16 22 C 0.09 2.63 6.70 22.57 0.15 2.78 16 23 O -0.32 -9.16 10.28 -79.61 -0.82 -9.98 16 24 C 0.02 0.30 9.81 113.37 1.11 1.41 16 25 C -0.16 -4.95 8.66 22.35 0.19 -4.76 16 26 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 27 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 29 H 0.02 0.85 6.62 -2.39 -0.02 0.84 16 30 H 0.04 1.71 7.57 -2.39 -0.02 1.70 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.12 4.08 7.56 -2.91 -0.02 4.06 16 33 H 0.16 3.57 6.30 -2.91 -0.02 3.55 16 34 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 35 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.07 7.68 -2.39 -0.02 1.05 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.11 7.65 -2.38 -0.02 1.09 16 40 H 0.15 3.97 6.18 -2.91 -0.02 3.95 16 Total: -1.00 -70.88 334.65 6.91 -63.97 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.99 Total: 16.00 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.47 Total: -11.33 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.72 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.73 Total: -56.69 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Total: -70.88 6.91 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096517582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.036 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds