Wall clock time and date at job start Tue Mar 31 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47525 * 179.97438 * 13 12 10 15 15 C 1.36056 * 123.28929 * 269.70952 * 14 13 12 16 16 O 1.21227 * 127.00673 * 347.30487 * 15 14 13 17 17 C 1.49659 * 105.91434 * 167.20402 * 15 14 13 18 18 H 1.08995 * 110.32713 * 275.56645 * 17 15 14 19 19 C 1.51035 * 119.59162 * 146.77697 * 17 15 14 20 20 C 1.53981 * 106.71851 * 182.45227 * 19 17 15 21 21 C 1.52473 * 112.11837 * 56.34725 * 20 19 17 22 22 C 1.54191 * 111.87670 * 306.95536 * 21 20 19 23 23 C 1.51313 * 106.18411 * 57.50282 * 22 21 20 24 24 H 1.08997 * 109.94237 * 53.21595 * 23 22 21 25 25 C 1.36056 * 123.28116 * 89.99776 * 14 13 12 26 26 O 1.21224 * 126.99767 * 347.29552 * 25 14 13 27 27 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 30 30 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 31 31 H 1.09000 * 109.47527 * 299.99994 * 13 12 10 32 32 H 1.09007 * 109.47302 * 59.99534 * 13 12 10 33 33 H 1.08998 * 110.00642 * 63.14807 * 19 17 15 34 34 H 1.09012 * 110.08259 * 301.79468 * 19 17 15 35 35 H 1.09000 * 108.95272 * 295.67131 * 20 19 17 36 36 H 1.09002 * 108.89130 * 176.98107 * 20 19 17 37 37 H 1.08996 * 109.00625 * 186.33419 * 21 20 19 38 38 H 1.09010 * 108.93712 * 67.52761 * 21 20 19 39 39 H 1.08996 * 110.09948 * 298.34177 * 22 21 20 40 40 H 1.08993 * 110.20611 * 176.72429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 6 6.0707 -3.8130 -0.0196 14 7 7.5357 -3.8131 -0.0268 15 6 8.2768 -3.8165 -1.1678 16 8 7.8823 -4.0327 -2.2935 17 6 9.6773 -3.4966 -0.7484 18 1 9.8131 -2.4177 -0.6736 19 6 10.8381 -4.1084 -1.4963 20 6 12.1206 -3.6359 -0.7871 21 6 12.1239 -3.9975 0.6942 22 6 10.8498 -3.5041 1.4088 23 6 9.6847 -4.1310 0.6744 24 1 9.8207 -5.2108 0.6144 25 6 8.2879 -3.8154 1.1069 26 8 7.9043 -3.6048 2.2373 27 1 -0.4850 0.8400 0.0004 28 1 3.8649 -0.3633 -0.0014 29 1 5.9200 -1.8545 -0.9044 30 1 5.9282 -1.8591 0.8755 31 1 5.7114 -4.3289 0.8709 32 1 5.7033 -4.3250 -0.9090 33 1 10.8368 -3.7664 -2.5313 34 1 10.7730 -5.1961 -1.4634 35 1 12.2024 -2.5536 -0.8874 36 1 12.9813 -4.1017 -1.2670 37 1 12.9946 -3.5445 1.1682 38 1 12.1896 -5.0810 0.7937 39 1 10.7863 -2.4174 1.3537 40 1 10.8534 -3.8264 2.4500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126884000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:51 Heat of formation + Delta-G solvation = -107.727010 kcal Electronic energy + Delta-G solvation = -23705.706332 eV Core-core repulsion = 20099.308493 eV Total energy + Delta-G solvation = -3606.397838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35767 -38.65861 -38.61673 -37.98873 -35.88453 -34.12313 -32.81460 -31.69613 -31.44149 -29.94339 -25.89305 -25.49184 -24.05465 -22.30481 -22.18142 -20.71959 -19.46786 -19.30223 -18.32428 -17.46167 -17.13711 -16.16454 -15.92222 -15.40230 -15.10277 -14.96234 -14.76578 -14.64627 -14.37186 -13.96398 -13.70269 -13.56061 -13.26455 -12.82255 -12.73077 -12.65723 -12.17772 -12.05896 -11.87643 -11.75995 -11.56427 -11.26515 -11.17815 -10.97884 -10.94627 -10.60826 -10.19631 -10.05378 -9.99789 -9.70457 -9.61441 -8.60892 -8.21919 -6.33761 -3.85399 1.38204 2.35360 2.41149 3.02172 3.06214 3.14217 3.44367 3.67842 3.93112 3.97145 4.08495 4.38269 4.54743 4.57497 4.61601 4.66894 4.80309 4.83415 4.93685 5.11305 5.18610 5.24818 5.29326 5.31574 5.40256 5.55780 5.56858 5.59154 5.64057 5.64548 5.75600 5.86923 5.93651 6.02214 6.18744 6.69891 7.15051 7.53062 7.65474 8.10747 8.54274 8.90605 9.38814 9.76145 10.79106 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.003336 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.174523 B = 8390.641915 C = 8480.900935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.585 5.585 10 C 0.454 3.546 11 O -0.578 6.578 12 C -0.148 4.148 13 C 0.121 3.879 14 N -0.592 5.592 15 C 0.541 3.459 16 O -0.465 6.465 17 C -0.132 4.132 18 H 0.123 0.877 19 C -0.097 4.097 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.098 4.098 23 C -0.133 4.133 24 H 0.123 0.877 25 C 0.539 3.461 26 O -0.465 6.465 27 H 0.274 0.726 28 H 0.372 0.628 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.249 -4.742 -0.120 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.139 0.861 9 N -0.222 5.222 10 C 0.240 3.760 11 O -0.462 6.462 12 C -0.190 4.190 13 C 0.000 4.000 14 N -0.338 5.338 15 C 0.329 3.671 16 O -0.335 6.335 17 C -0.153 4.153 18 H 0.141 0.859 19 C -0.135 4.135 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.136 4.136 23 C -0.154 4.154 24 H 0.140 0.860 25 C 0.328 3.672 26 O -0.334 6.334 27 H 0.085 0.915 28 H 0.205 0.795 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 27.149 -5.327 -0.114 27.667 hybrid contribution 0.330 1.510 0.020 1.546 sum 27.479 -3.817 -0.094 27.743 Atomic orbital electron populations 1.69621 1.05655 1.27605 1.48940 1.25050 0.95513 0.98034 0.97449 0.86672 0.79844 0.83976 0.78963 1.19524 1.20038 1.19455 1.19467 0.79184 0.96740 1.48228 0.86148 1.42211 1.07623 1.06184 1.66228 1.19462 0.87745 0.84612 0.84183 1.90570 1.69804 1.30902 1.54961 1.21815 0.96048 0.97658 1.03484 1.21496 0.74922 0.97518 1.06064 1.48117 1.09625 1.67507 1.08512 1.20620 0.88399 0.74377 0.83678 1.90777 1.78627 1.43794 1.20257 1.22153 0.93369 1.03637 0.96181 0.85946 1.21192 0.91867 1.00929 0.99532 1.21602 0.97283 1.01740 0.95142 1.21643 0.97383 1.01613 0.95099 1.21309 0.91847 1.00805 0.99610 1.22195 0.93405 1.03569 0.96204 0.85955 1.20637 0.88353 0.74456 0.83800 1.90781 1.78961 1.43810 1.19829 0.91525 0.79547 0.90050 0.89687 0.88318 0.87976 0.90094 0.90760 0.91617 0.91170 0.91156 0.91628 0.90684 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 7 C -0.31 -8.85 10.16 -14.93 -0.15 -9.00 16 8 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 9 N -0.58 -14.32 5.09 -10.96 -0.06 -14.37 16 10 C 0.45 10.57 7.78 -10.99 -0.09 10.49 16 11 O -0.58 -15.63 15.56 5.55 0.09 -15.55 16 12 C -0.15 -2.57 6.02 -27.88 -0.17 -2.74 16 13 C 0.12 1.95 5.03 -4.04 -0.02 1.93 16 14 N -0.59 -7.69 2.67 -115.47 -0.31 -8.00 16 15 C 0.54 6.47 7.74 -10.91 -0.08 6.39 16 16 O -0.47 -7.09 17.68 5.60 0.10 -7.00 16 17 C -0.13 -1.02 2.39 -91.77 -0.22 -1.24 16 18 H 0.12 0.81 7.79 -51.93 -0.40 0.41 16 19 C -0.10 -0.56 5.83 -27.21 -0.16 -0.72 16 20 C -0.12 -0.50 5.80 -26.49 -0.15 -0.65 16 21 C -0.12 -0.50 5.80 -26.38 -0.15 -0.65 16 22 C -0.10 -0.57 5.86 -26.96 -0.16 -0.73 16 23 C -0.13 -1.01 2.39 -91.67 -0.22 -1.23 16 24 H 0.12 0.78 7.87 -51.93 -0.41 0.37 16 25 C 0.54 6.45 7.72 -10.94 -0.08 6.36 16 26 O -0.46 -7.09 17.83 5.61 0.10 -6.99 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.37 8.04 5.76 -40.82 -0.24 7.80 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.10 1.68 8.04 -51.93 -0.42 1.26 16 32 H 0.10 1.75 7.84 -51.93 -0.41 1.34 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.41 7.97 -51.92 -0.41 0.00 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 39 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -34.68 333.27 -6.38 -41.07 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.63 Total: 6.70 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.75 Total: 9.30 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.41 Total: -47.49 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: 0.29 Total: -29.54 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.68 -6.38 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126884000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.661 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds