Wall clock time and date at job start Tue Mar 31 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 120.00195 * 2 1 4 4 C 1.50701 * 109.46784 * 270.00490 * 3 2 1 5 5 H 1.07990 * 120.00481 * 359.97438 * 4 3 2 6 6 C 1.37887 * 119.99121 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99116 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00526 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46716 * 89.99859 * 8 6 4 10 10 H 1.48500 * 109.47042 * 210.00130 * 8 6 4 11 11 H 1.48504 * 109.46917 * 329.99943 * 8 6 4 12 12 C 1.34771 * 120.00044 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00306 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00035 * 359.97438 * 12 2 1 15 15 N 1.46502 * 109.47479 * 179.97438 * 14 12 2 16 16 C 1.34773 * 120.00061 * 179.97438 * 15 14 12 17 17 O 1.21568 * 120.00167 * 0.02562 * 16 15 14 18 18 C 1.47733 * 119.99821 * 180.02562 * 16 15 14 19 19 C 1.39646 * 120.11740 * 0.27389 * 18 16 15 20 20 C 1.37838 * 119.88070 * 180.23285 * 19 18 16 21 21 C 1.38658 * 120.11710 * 359.49180 * 20 19 18 22 22 F 1.35093 * 119.88405 * 180.27876 * 21 20 19 23 23 C 1.38657 * 120.23712 * 0.25791 * 21 20 19 24 24 C 1.37840 * 120.11828 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.46737 * 269.99661 * 1 2 3 26 26 H 1.09006 * 109.47223 * 29.99440 * 1 2 3 27 27 H 1.09000 * 109.47420 * 149.99990 * 1 2 3 28 28 H 1.08999 * 109.46783 * 30.00244 * 3 2 1 29 29 H 1.08998 * 109.47068 * 150.00418 * 3 2 1 30 30 H 0.96998 * 119.99179 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47187 * 60.00285 * 14 12 2 32 32 H 1.09000 * 109.47096 * 300.00003 * 14 12 2 33 33 H 0.97006 * 119.99574 * 0.02562 * 15 14 12 34 34 H 1.08004 * 120.06390 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.94593 * 179.77526 * 20 19 18 36 36 H 1.08003 * 119.94100 * 180.02562 * 23 21 20 37 37 H 1.08004 * 120.05787 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0959 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.3446 3.2580 -2.9127 8 14 3.7318 3.9300 -0.2529 9 1 5.1051 3.5092 0.1240 10 1 3.7467 5.3566 -0.6649 11 1 2.8251 3.7603 0.9109 12 6 2.1388 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 7 2.3373 -3.5858 -0.0018 16 6 1.8880 -4.8564 -0.0015 17 8 0.6928 -5.0786 -0.0006 18 6 2.8480 -5.9793 -0.0021 19 6 4.2215 -5.7270 0.0027 20 6 5.1129 -6.7783 -0.0028 21 6 4.6480 -8.0847 -0.0025 22 9 5.5258 -9.1115 -0.0022 23 6 3.2853 -8.3409 -0.0020 24 6 2.3852 -7.2969 -0.0013 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 3.8208 4.0843 -3.0898 31 1 0.7584 -2.5298 -0.8903 32 1 0.7591 -2.5302 0.8897 33 1 3.2910 -3.4085 -0.0020 34 1 4.5847 -4.7099 0.0073 35 1 6.1753 -6.5844 -0.0028 36 1 2.9284 -9.3602 -0.0014 37 1 1.3240 -7.4975 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170690321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:49 Heat of formation + Delta-G solvation = -82.179326 kcal Electronic energy + Delta-G solvation = -22349.305226 eV Core-core repulsion = 18620.554913 eV Total energy + Delta-G solvation = -3728.750313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.30290 -40.46011 -39.27220 -38.17074 -35.29493 -34.46459 -32.63745 -31.58884 -31.23445 -29.20666 -27.32466 -25.88527 -23.89960 -23.29797 -22.23224 -20.66284 -19.25260 -18.26349 -17.67790 -17.06268 -16.88705 -16.19626 -16.00890 -15.77875 -15.73002 -15.31951 -14.88613 -14.67968 -14.20839 -13.99979 -13.69306 -13.50187 -13.06623 -12.96307 -12.74393 -12.52301 -12.44060 -12.14084 -12.09535 -11.57354 -11.40776 -11.02117 -10.60695 -10.23908 -10.18727 -9.64606 -9.55808 -9.32421 -9.31171 -9.03381 -8.66146 -7.89202 -6.15713 -4.15591 0.35371 0.84094 2.52552 2.87812 3.05970 3.23998 3.30000 3.31554 3.45640 3.73705 3.80124 4.30600 4.32917 4.46248 4.49646 4.79149 4.83031 4.93171 5.17578 5.34290 5.35844 5.46195 5.52140 5.57299 5.68524 5.77015 5.77799 5.90600 6.08249 6.18895 6.40285 6.57372 6.81517 7.13133 7.39609 7.51421 7.96114 8.09125 8.36592 8.67207 8.87366 9.43507 10.97514 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.002966 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.349046 B = 9438.988538 C =10198.488008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.590 5.590 3 C 0.215 3.785 4 C -0.533 4.533 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.501 3.499 13 O -0.541 6.541 14 C 0.101 3.899 15 N -0.708 5.708 16 C 0.561 3.439 17 O -0.541 6.541 18 C -0.143 4.143 19 C -0.054 4.054 20 C -0.160 4.160 21 C 0.122 3.878 22 F -0.136 7.136 23 C -0.164 4.164 24 C -0.030 4.030 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.412 0.588 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -19.456 7.958 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.321 5.321 3 C 0.095 3.905 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.287 3.713 13 O -0.419 6.419 14 C -0.027 4.027 15 N -0.363 5.363 16 C 0.348 3.652 17 O -0.419 6.419 18 C -0.146 4.146 19 C -0.072 4.072 20 C -0.178 4.178 21 C 0.102 3.898 22 F -0.114 7.114 23 C -0.182 4.182 24 C -0.049 4.049 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.251 0.749 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.095 -19.419 7.847 21.049 hybrid contribution 0.940 0.656 0.476 1.241 sum -1.155 -18.763 8.323 20.559 Atomic orbital electron populations 1.21778 0.80359 1.03530 1.00979 1.47783 1.06638 1.06886 1.70779 1.19735 0.92507 0.79696 0.98591 1.21299 1.37348 1.07335 0.91124 0.90702 1.24866 0.95171 0.97318 0.95627 1.69897 1.41243 1.23532 1.18686 0.86835 0.80096 0.79830 0.82824 1.19878 1.21002 1.19043 1.20178 0.88120 0.85234 0.77740 1.90655 1.13663 1.86819 1.50761 1.21195 0.92130 0.84882 1.04449 1.45658 1.11647 1.04618 1.74369 1.18069 0.88062 0.82460 0.76578 1.90777 1.15979 1.84833 1.50327 1.19993 0.93410 0.94089 1.07111 1.21329 0.91696 0.99817 0.94401 1.21128 1.01599 0.90662 1.04453 1.17997 0.87215 0.84426 1.00143 1.91523 1.68561 1.57866 1.93474 1.21140 0.91066 1.01022 1.05018 1.21139 1.00834 0.90117 0.92833 0.93105 0.90095 0.91773 0.94888 0.94381 0.92458 0.88360 0.88595 0.74882 0.84006 0.83850 0.83962 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.71 16 2 N -0.59 -11.35 2.86 -182.95 -0.52 -11.87 16 3 C 0.22 5.01 4.23 -5.19 -0.02 4.99 16 4 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 16 5 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.07 2.07 5.47 -17.81 -0.10 1.97 16 7 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 8 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 12 C 0.50 9.36 7.74 -10.99 -0.09 9.27 16 13 O -0.54 -11.90 15.25 5.55 0.08 -11.81 16 14 C 0.10 1.44 4.71 -5.19 -0.02 1.42 16 15 N -0.71 -9.66 5.48 -62.47 -0.34 -10.00 16 16 C 0.56 7.53 7.77 -12.38 -0.10 7.43 16 17 O -0.54 -8.54 16.34 5.31 0.09 -8.46 16 18 C -0.14 -1.56 5.87 -104.97 -0.62 -2.18 16 19 C -0.05 -0.51 9.54 -39.20 -0.37 -0.88 16 20 C -0.16 -1.39 10.01 -39.57 -0.40 -1.78 16 21 C 0.12 1.11 7.31 -39.27 -0.29 0.82 16 22 F -0.14 -1.30 17.26 2.25 0.04 -1.26 16 23 C -0.16 -1.36 10.01 -39.57 -0.40 -1.76 16 24 C -0.03 -0.29 9.59 -39.20 -0.38 -0.67 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 28 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 29 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 32 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 33 H 0.41 5.46 5.47 -40.82 -0.22 5.24 16 34 H 0.14 1.21 6.40 -52.48 -0.34 0.88 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.15 1.32 7.65 -52.48 -0.40 0.91 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -33.97 325.93 -6.24 -40.21 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.10 Total: 3.13 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.50 Total: 5.18 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.09 Total: -48.16 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.97 -6.24 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170690321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.969 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds