Wall clock time and date at job start Tue Mar 31 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 N 1.46502 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.34773 * 119.99735 * 180.02562 * 16 15 13 18 18 O 1.21551 * 120.00121 * 359.97438 * 17 16 15 19 19 C 1.47858 * 119.99365 * 180.02562 * 17 16 15 20 20 C 1.39587 * 120.13716 * 359.71840 * 19 17 16 21 21 C 1.37942 * 119.90601 * 179.76830 * 20 19 17 22 22 C 1.38336 * 120.17466 * 0.51068 * 21 20 19 23 23 C 1.38551 * 120.26769 * 359.74649 * 22 21 20 24 24 F 1.35105 * 119.95548 * 180.02562 * 23 22 21 25 25 C 1.38211 * 120.09168 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 31 31 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 32 32 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 33 33 H 0.96999 * 119.99454 * 0.02562 * 16 15 13 34 34 H 1.08002 * 120.04506 * 0.02867 * 20 19 17 35 35 H 1.08000 * 119.90969 * 180.23031 * 21 20 19 36 36 H 1.07999 * 119.87156 * 179.76371 * 22 21 20 37 37 H 1.08000 * 120.08582 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 7 2.6976 0.2126 4.7094 17 6 3.1190 -0.2032 5.9202 18 8 3.4581 -1.3592 6.0817 19 6 3.1676 0.7467 7.0522 20 6 2.7834 2.0760 6.8687 21 6 2.8261 2.9570 7.9292 22 6 3.2588 2.5292 9.1716 23 6 3.6469 1.2126 9.3606 24 9 4.0679 0.8014 10.5768 25 6 3.6030 0.3191 8.3071 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9028 -0.5285 -4.4375 30 1 2.2491 -1.6317 1.1527 31 1 1.9760 -1.5505 3.8327 32 1 3.6480 -1.1212 3.3987 33 1 2.4266 1.1350 4.5805 34 1 2.4491 2.4133 5.8986 35 1 2.5253 3.9846 7.7882 36 1 3.2939 3.2240 9.9976 37 1 3.9052 -0.7072 8.4546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171285238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:55 Heat of formation + Delta-G solvation = -111.430060 kcal Electronic energy + Delta-G solvation = -22219.297453 eV Core-core repulsion = 18489.278733 eV Total energy + Delta-G solvation = -3730.018720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97251 -41.52267 -40.56820 -39.14285 -37.01335 -35.63296 -34.43765 -32.63198 -32.03100 -31.53774 -28.70511 -27.20848 -25.08211 -23.70007 -23.07274 -21.69357 -21.38277 -19.99186 -18.87721 -17.93318 -17.72235 -17.33341 -17.22874 -16.96563 -16.89613 -16.65256 -16.47171 -15.81638 -15.73219 -15.00820 -14.94493 -14.85272 -14.26823 -14.22161 -14.11205 -13.95136 -13.59949 -13.26085 -13.09064 -12.98933 -12.77048 -12.41628 -12.13362 -11.62277 -11.30585 -11.26261 -10.94185 -10.85877 -10.44712 -10.15531 -9.93833 -9.85568 -8.37205 -6.43883 -0.39309 0.09019 1.29691 1.37583 1.46458 1.56495 1.65580 1.71179 2.27145 2.48795 2.63231 2.99175 3.15952 3.48995 3.70303 3.75209 3.97162 4.02368 4.24033 4.30927 4.34471 4.46274 4.57116 4.64504 4.71342 4.92705 4.97860 4.99788 5.09399 5.13849 5.22380 5.32272 5.42490 5.58320 5.73814 6.10951 6.32490 6.58194 6.74791 6.98308 7.15723 7.31950 8.78028 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.037943 B = 0.002662 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.780583 B =10516.551891 C =11033.894435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.030 0.970 4 C -0.535 4.535 5 H 0.056 0.944 6 C 0.026 3.974 7 N -0.935 5.935 8 Si 0.941 3.059 9 H -0.261 1.261 10 H -0.256 1.256 11 H -0.295 1.295 12 N -0.694 5.694 13 C 0.505 3.495 14 O -0.581 6.581 15 C 0.107 3.893 16 N -0.703 5.703 17 C 0.561 3.439 18 O -0.570 6.570 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.117 4.117 23 C 0.076 3.924 24 F -0.144 7.144 25 C -0.109 4.109 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.417 0.583 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 7.639 24.379 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.047 0.953 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.769 3.231 9 H -0.187 1.187 10 H -0.181 1.181 11 H -0.223 1.223 12 N -0.343 5.343 13 C 0.291 3.709 14 O -0.463 6.463 15 C -0.020 4.020 16 N -0.358 5.358 17 C 0.349 3.651 18 O -0.451 6.451 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.136 4.136 23 C 0.057 3.943 24 F -0.122 7.122 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.257 0.743 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.186 0.814 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.329 7.613 24.315 25.481 hybrid contribution -0.172 0.007 -0.658 0.680 sum -0.501 7.620 23.657 24.859 Atomic orbital electron populations 1.22357 0.97613 1.01808 0.99706 1.18809 0.91310 0.93358 0.82755 0.95253 1.21278 1.32420 1.13662 0.89993 0.92537 1.25606 0.96898 0.99493 0.95341 1.69986 1.46689 1.42003 0.98713 0.85967 0.79616 0.80226 0.77327 1.18660 1.18089 1.22293 1.45946 1.64745 1.14668 1.08929 1.20787 0.77683 0.87166 0.85289 1.90624 1.52965 1.17228 1.85435 1.21107 1.04648 0.92610 0.83638 1.45572 1.66547 1.15368 1.08340 1.18405 0.76579 0.87344 0.82739 1.90774 1.50036 1.19948 1.84318 1.19578 1.05107 0.94806 0.92858 1.21733 0.96725 0.91283 1.01267 1.21406 0.96955 1.01644 0.90475 1.21753 0.97852 0.93637 1.00368 1.17707 1.02005 0.94221 0.80343 1.91510 1.87945 1.91123 1.41653 1.21194 0.99406 1.00816 0.91430 0.94080 0.91707 0.93049 0.92083 0.75335 0.86569 0.87085 0.74296 0.83206 0.80608 0.81417 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.31 8.97 71.98 0.65 -5.67 16 2 C 0.24 10.68 2.15 44.24 0.10 10.78 16 3 H 0.03 1.43 6.63 -2.38 -0.02 1.42 16 4 C -0.54 -28.00 9.31 25.60 0.24 -27.76 16 5 H 0.06 3.16 7.98 -2.91 -0.02 3.14 16 6 C 0.03 1.44 5.45 84.66 0.46 1.90 16 7 N -0.94 -55.01 13.96 21.45 0.30 -54.71 16 8 Si 0.94 42.95 24.37 68.60 1.67 44.63 16 9 H -0.26 -11.20 6.87 99.48 0.68 -10.52 16 10 H -0.26 -11.37 6.53 99.48 0.65 -10.72 16 11 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 12 N -0.69 -24.40 5.07 -446.08 -2.26 -26.66 16 13 C 0.50 16.05 7.86 87.66 0.69 16.74 16 14 O -0.58 -21.66 15.33 -3.03 -0.05 -21.71 16 15 C 0.11 2.60 6.15 85.63 0.53 3.13 16 16 N -0.70 -16.46 5.48 -469.70 -2.57 -19.03 16 17 C 0.56 14.04 7.77 86.79 0.67 14.72 16 18 O -0.57 -17.88 16.35 -3.88 -0.06 -17.95 16 19 C -0.12 -2.42 5.87 -20.09 -0.12 -2.54 16 20 C -0.09 -1.30 9.54 22.53 0.21 -1.08 16 21 C -0.09 -0.85 10.03 22.22 0.22 -0.62 16 22 C -0.12 -1.32 10.02 22.37 0.22 -1.09 16 23 C 0.08 1.31 7.29 22.34 0.16 1.47 16 24 F -0.14 -2.73 17.26 44.97 0.78 -1.95 16 25 C -0.11 -2.21 9.57 22.58 0.22 -2.00 16 26 H 0.04 1.71 3.27 -2.39 -0.01 1.70 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.41 12.59 8.54 -92.71 -0.79 11.80 16 31 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.42 9.02 5.47 -92.71 -0.51 8.52 16 34 H 0.15 1.74 6.40 -2.91 -0.02 1.72 16 35 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.14 3.02 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -69.02 321.26 1.82 -67.21 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.24 Total: 22.20 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 4.25 Total: 7.98 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.54 Total: -100.40 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.11 Total: -39.66 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.67 Total: 44.63 kcal Total: -69.02 1.82 -67.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171285238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.222 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds