Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46917 * 299.99877 * 3 2 1 6 6 H 1.48498 * 109.47279 * 59.99923 * 3 2 1 7 7 C 1.40050 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99791 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00155 * 179.97438 * 9 7 2 12 12 C 1.46494 * 119.99998 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47253 * 180.02562 * 12 11 9 14 14 N 1.46496 * 109.47432 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00148 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.38271 * 119.98983 * 270.25578 * 18 17 15 20 20 C 1.38219 * 120.05279 * 180.25774 * 19 18 17 21 21 C 1.38227 * 120.02402 * 359.48356 * 20 19 18 22 22 C 1.38435 * 119.97416 * 0.26250 * 21 20 19 23 23 F 1.35097 * 120.02437 * 179.97438 * 22 21 20 24 24 C 1.38179 * 119.98470 * 90.00076 * 18 17 15 25 25 H 0.96996 * 120.00158 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99550 * 0.02562 * 11 9 7 27 27 H 1.09000 * 109.47071 * 60.00915 * 12 11 9 28 28 H 1.08999 * 109.47799 * 300.00821 * 12 11 9 29 29 H 1.09001 * 109.47383 * 60.00171 * 13 12 11 30 30 H 1.09007 * 109.47183 * 300.00634 * 13 12 11 31 31 H 0.97003 * 120.00273 * 0.02562 * 14 13 12 32 32 H 1.09007 * 109.46973 * 59.99753 * 17 15 14 33 33 H 1.08994 * 109.47082 * 299.99805 * 17 15 14 34 34 H 1.08000 * 119.97479 * 0.02562 * 19 18 17 35 35 H 1.08002 * 119.99072 * 179.76964 * 20 19 18 36 36 H 1.07999 * 120.01289 * 180.23490 * 21 20 19 37 37 H 1.07994 * 120.01414 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6477 -0.0016 12 6 1.2166 -4.9164 -0.0022 13 6 2.2108 -6.0793 -0.0027 14 7 1.4784 -7.3480 -0.0039 15 6 2.1523 -8.5152 -0.0040 16 8 3.3651 -8.5153 -0.0036 17 6 1.3989 -9.8204 -0.0046 18 6 2.3782 -10.9658 -0.0052 19 6 2.8313 -11.4870 -1.2031 20 6 3.7254 -12.5410 -1.2052 21 6 4.1759 -13.0683 -0.0095 22 6 3.7269 -12.5439 1.1904 23 9 4.1661 -13.0588 2.3597 24 6 2.8270 -11.4913 1.1913 25 1 -0.4850 0.8400 -0.0004 26 1 2.9191 -3.6476 -0.0020 27 1 0.5897 -4.9736 -0.8920 28 1 0.5902 -4.9748 0.8879 29 1 2.8375 -6.0220 0.8873 30 1 2.8376 -6.0211 -0.8926 31 1 0.5084 -7.3481 -0.0046 32 1 0.7725 -9.8778 -0.8949 33 1 0.7720 -9.8784 0.8851 34 1 2.4835 -11.0727 -2.1378 35 1 4.0759 -12.9498 -2.1415 36 1 4.8774 -13.8894 -0.0114 37 1 2.4758 -11.0816 2.1268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -104.780775 kcal Electronic energy + Delta-G solvation = -21610.716759 eV Core-core repulsion = 17880.986374 eV Total energy + Delta-G solvation = -3729.730385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.12382 -40.21272 -38.86204 -37.42750 -35.25973 -33.31221 -32.95536 -32.24987 -30.84548 -29.22039 -27.56776 -25.90105 -23.08796 -22.76440 -21.91488 -20.64799 -19.63468 -17.78254 -17.37313 -17.00630 -16.74143 -16.46082 -15.83137 -15.76162 -15.64703 -15.23504 -14.55242 -14.33224 -14.19011 -14.01372 -13.61935 -13.55217 -13.39287 -12.62961 -12.40437 -12.39102 -12.21085 -11.92499 -11.39500 -11.32289 -11.26392 -11.14374 -10.88846 -10.51336 -10.23518 -10.07393 -9.25549 -9.11922 -8.94340 -8.89961 -7.70180 -7.62714 -6.23841 -4.68991 0.84422 0.92400 2.52348 2.95432 3.11040 3.19587 3.24170 3.40584 3.92568 4.08717 4.25557 4.42579 4.53589 4.67445 4.72084 4.86064 4.91757 4.93687 5.06917 5.16540 5.21367 5.36626 5.52469 5.73832 5.75679 5.76142 5.80932 5.98498 6.14783 6.22671 6.36787 6.44071 6.59568 7.39296 7.39775 7.84545 7.98878 8.11887 8.27321 8.98167 9.44228 10.53888 10.71833 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.041138 B = 0.002099 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.479247 B =13337.421455 C =13483.409032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.765 5.765 12 C 0.124 3.876 13 C 0.110 3.890 14 N -0.724 5.724 15 C 0.513 3.487 16 O -0.533 6.533 17 C -0.105 4.105 18 C -0.035 4.035 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.098 3.902 23 F -0.141 7.141 24 C -0.139 4.139 25 H 0.268 0.732 26 H 0.383 0.617 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.403 0.597 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -24.036 -1.300 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.422 5.422 12 C -0.002 4.002 13 C -0.014 4.014 14 N -0.377 5.377 15 C 0.298 3.702 16 O -0.409 6.409 17 C -0.145 4.145 18 C -0.036 4.036 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.175 4.175 22 C 0.079 3.921 23 F -0.120 7.120 24 C -0.158 4.158 25 H 0.079 0.921 26 H 0.214 0.786 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.238 0.762 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.708 -23.929 -1.250 24.247 hybrid contribution 0.531 0.737 0.249 0.942 sum 4.239 -23.192 -1.000 23.598 Atomic orbital electron populations 1.70022 1.07090 1.27259 1.35292 1.25722 0.94647 1.00389 0.92567 0.86293 0.80508 0.81599 0.78228 1.18724 1.20140 1.20136 1.20913 0.93697 0.89225 1.54216 0.91239 1.18250 0.87205 0.82304 0.76354 1.90599 1.14079 1.86737 1.54959 1.46038 1.08741 1.04375 1.83073 1.20944 0.93969 0.84032 1.01289 1.21566 0.95160 0.82022 1.02667 1.45893 1.10659 1.05692 1.75440 1.20408 0.88254 0.85008 0.76511 1.90747 1.13832 1.87548 1.48789 1.20716 0.97558 0.90267 1.05970 1.19109 0.96782 0.95052 0.92652 1.21080 0.97892 0.96614 0.97720 1.20971 0.96385 0.95874 0.97559 1.21147 1.02559 1.02362 0.91392 1.17639 0.97517 0.95602 0.81360 1.91500 1.88186 1.85985 1.46314 1.20977 0.98793 0.96751 0.99286 0.92103 0.78552 0.92792 0.92806 0.91119 0.91110 0.76240 0.87279 0.87443 0.85338 0.84916 0.84851 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.78 11.83 55.55 0.66 -22.13 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.55 15.51 7.75 -12.99 -0.10 15.41 16 10 O -0.58 -18.48 15.02 5.20 0.08 -18.40 16 11 N -0.77 -16.55 5.55 -61.72 -0.34 -16.90 16 12 C 0.12 2.17 5.79 -4.05 -0.02 2.15 16 13 C 0.11 1.54 5.79 -4.04 -0.02 1.51 16 14 N -0.72 -8.07 5.56 -60.29 -0.33 -8.40 16 15 C 0.51 5.98 7.82 -10.98 -0.09 5.89 16 16 O -0.53 -8.53 16.03 5.56 0.09 -8.44 16 17 C -0.11 -0.80 5.83 -29.04 -0.17 -0.97 16 18 C -0.04 -0.33 4.37 -104.63 -0.46 -0.79 16 19 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 20 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 21 C -0.16 -1.36 10.03 -39.51 -0.40 -1.76 16 22 C 0.10 1.02 7.30 -39.42 -0.29 0.73 16 23 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 24 C -0.14 -1.39 9.68 -39.51 -0.38 -1.78 16 25 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 26 H 0.38 7.30 8.45 -40.82 -0.35 6.95 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 31 H 0.40 3.43 8.47 -40.82 -0.35 3.09 16 32 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.11 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -37.11 335.31 -7.39 -44.50 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.46 Total: 6.62 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.14 Total: 4.72 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.02 Total: -47.42 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.17 Total: -26.84 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.11 -7.39 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.285 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds