Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46917 * 299.99877 * 3 2 1 6 6 H 1.48498 * 109.47279 * 59.99923 * 3 2 1 7 7 C 1.40050 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99791 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00155 * 179.97438 * 9 7 2 12 12 C 1.46494 * 119.99998 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47253 * 180.02562 * 12 11 9 14 14 N 1.46496 * 109.47432 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00148 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.38271 * 119.98983 * 270.25578 * 18 17 15 20 20 C 1.38219 * 120.05279 * 180.25774 * 19 18 17 21 21 C 1.38227 * 120.02402 * 359.48356 * 20 19 18 22 22 C 1.38435 * 119.97416 * 0.26250 * 21 20 19 23 23 F 1.35097 * 120.02437 * 179.97438 * 22 21 20 24 24 C 1.38179 * 119.98470 * 90.00076 * 18 17 15 25 25 H 0.96996 * 120.00158 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99550 * 0.02562 * 11 9 7 27 27 H 1.09000 * 109.47071 * 60.00915 * 12 11 9 28 28 H 1.08999 * 109.47799 * 300.00821 * 12 11 9 29 29 H 1.09001 * 109.47383 * 60.00171 * 13 12 11 30 30 H 1.09007 * 109.47183 * 300.00634 * 13 12 11 31 31 H 0.97003 * 120.00273 * 0.02562 * 14 13 12 32 32 H 1.09007 * 109.46973 * 59.99753 * 17 15 14 33 33 H 1.08994 * 109.47082 * 299.99805 * 17 15 14 34 34 H 1.08000 * 119.97479 * 0.02562 * 19 18 17 35 35 H 1.08002 * 119.99072 * 179.76964 * 20 19 18 36 36 H 1.07999 * 120.01289 * 180.23490 * 21 20 19 37 37 H 1.07994 * 120.01414 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6477 -0.0016 12 6 1.2166 -4.9164 -0.0022 13 6 2.2108 -6.0793 -0.0027 14 7 1.4784 -7.3480 -0.0039 15 6 2.1523 -8.5152 -0.0040 16 8 3.3651 -8.5153 -0.0036 17 6 1.3989 -9.8204 -0.0046 18 6 2.3782 -10.9658 -0.0052 19 6 2.8313 -11.4870 -1.2031 20 6 3.7254 -12.5410 -1.2052 21 6 4.1759 -13.0683 -0.0095 22 6 3.7269 -12.5439 1.1904 23 9 4.1661 -13.0588 2.3597 24 6 2.8270 -11.4913 1.1913 25 1 -0.4850 0.8400 -0.0004 26 1 2.9191 -3.6476 -0.0020 27 1 0.5897 -4.9736 -0.8920 28 1 0.5902 -4.9748 0.8879 29 1 2.8375 -6.0220 0.8873 30 1 2.8376 -6.0211 -0.8926 31 1 0.5084 -7.3481 -0.0046 32 1 0.7725 -9.8778 -0.8949 33 1 0.7720 -9.8784 0.8851 34 1 2.4835 -11.0727 -2.1378 35 1 4.0759 -12.9498 -2.1415 36 1 4.8774 -13.8894 -0.0114 37 1 2.4758 -11.0816 2.1268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219514420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -132.463353 kcal Electronic energy + Delta-G solvation = -21611.917166 eV Core-core repulsion = 17880.986374 eV Total energy + Delta-G solvation = -3730.930792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.91027 -41.08216 -39.71989 -39.32049 -36.63438 -34.85054 -34.30051 -33.80379 -31.50985 -30.53522 -28.77253 -27.60618 -24.06394 -23.68326 -22.85717 -21.96218 -21.19593 -19.35883 -18.37258 -18.03766 -17.54054 -17.44954 -17.11130 -16.76242 -16.71849 -16.57339 -15.98658 -15.77601 -15.67265 -14.91762 -14.67171 -14.46073 -14.35813 -14.16779 -14.07942 -13.10360 -13.08508 -13.04517 -12.85224 -12.74935 -12.61847 -12.57451 -12.48921 -12.00233 -11.97557 -11.08076 -10.95108 -10.16403 -9.94395 -9.89316 -9.63337 -9.54093 -8.30863 -6.86551 0.16951 0.25535 1.40835 1.41624 1.59217 1.62435 2.01388 2.27212 2.45678 2.67648 3.23766 3.29942 3.59864 3.60625 3.76364 3.83278 4.02935 4.10233 4.12204 4.27000 4.34834 4.45334 4.50938 4.62952 4.88930 4.93500 4.96343 5.10327 5.15926 5.32218 5.34099 5.35963 5.50282 5.85839 5.95035 6.17729 6.23919 6.52231 6.86319 7.22218 7.49257 8.46042 8.65384 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.041138 B = 0.002099 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.479247 B =13337.421455 C =13483.409032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.756 5.756 12 C 0.130 3.870 13 C 0.128 3.872 14 N -0.716 5.716 15 C 0.513 3.487 16 O -0.579 6.579 17 C -0.096 4.096 18 C -0.049 4.049 19 C -0.122 4.122 20 C -0.091 4.091 21 C -0.161 4.161 22 C 0.071 3.929 23 F -0.153 7.153 24 C -0.154 4.154 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -24.274 -2.139 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.411 5.411 12 C 0.004 3.996 13 C 0.003 3.997 14 N -0.370 5.370 15 C 0.301 3.699 16 O -0.459 6.459 17 C -0.135 4.135 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.109 4.109 21 C -0.179 4.179 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.173 4.173 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.255 0.745 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.510 -24.225 -2.087 24.730 hybrid contribution 0.285 0.714 0.490 0.912 sum 4.794 -23.511 -1.597 24.048 Atomic orbital electron populations 1.70173 1.09458 1.28969 1.36399 1.26965 0.95559 1.04954 0.91226 0.84963 0.79311 0.75430 0.78540 1.17125 1.19313 1.19365 1.21461 0.94799 0.90041 1.54578 0.89429 1.18579 0.86840 0.84189 0.76090 1.90554 1.16045 1.87881 1.57205 1.45686 1.09495 1.04494 1.81448 1.20978 0.94393 0.83513 1.00676 1.21175 0.94060 0.82022 1.02412 1.45780 1.11388 1.04660 1.75127 1.21098 0.87847 0.85975 0.74944 1.90733 1.16027 1.88189 1.50932 1.20773 0.97113 0.86893 1.08742 1.19353 0.97334 0.95609 0.92635 1.21446 0.97643 0.96594 0.98275 1.21345 0.95759 0.95456 0.98317 1.21435 1.02621 1.02702 0.91165 1.17967 0.98631 0.96562 0.81633 1.91462 1.88441 1.86229 1.47012 1.21163 0.99140 0.97026 0.99998 0.91487 0.76958 0.93290 0.93479 0.91543 0.91258 0.74501 0.84048 0.84997 0.83452 0.82173 0.83259 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.53 11.83 21.84 0.26 -49.27 16 2 C 0.03 1.55 5.50 85.31 0.47 2.02 16 3 Si 1.00 40.44 29.56 68.60 2.03 42.47 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.57 -31.97 9.54 24.83 0.24 -31.74 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.54 30.61 7.75 86.36 0.67 31.28 16 10 O -0.63 -41.19 15.02 -4.32 -0.06 -41.26 16 11 N -0.76 -32.70 5.55 -467.42 -2.59 -35.29 16 12 C 0.13 4.52 5.79 86.38 0.50 5.02 16 13 C 0.13 3.46 5.79 86.38 0.50 3.96 16 14 N -0.72 -14.72 5.56 -463.06 -2.57 -17.29 16 15 C 0.51 11.08 7.82 87.66 0.69 11.76 16 16 O -0.58 -18.05 16.03 -3.03 -0.05 -18.10 16 17 C -0.10 -1.20 5.83 29.10 0.17 -1.03 16 18 C -0.05 -0.83 4.37 -19.87 -0.09 -0.91 16 19 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16 20 C -0.09 -1.25 10.04 22.26 0.22 -1.03 16 21 C -0.16 -2.64 10.03 22.31 0.22 -2.42 16 22 C 0.07 1.47 7.30 22.38 0.16 1.63 16 23 F -0.15 -3.48 17.27 44.97 0.78 -2.71 16 24 C -0.15 -3.02 9.68 22.31 0.22 -2.81 16 25 H 0.28 14.96 8.29 -92.71 -0.77 14.20 16 26 H 0.40 14.90 8.45 -92.71 -0.78 14.11 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.42 6.22 8.47 -92.71 -0.79 5.44 16 32 H 0.14 0.89 8.09 -2.38 -0.02 0.87 16 33 H 0.13 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -82.80 335.31 1.52 -81.28 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.45 Total: 26.04 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 4.19 Total: 14.13 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -4.91 Total: -101.85 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -0.11 Total: -59.36 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -82.80 1.52 -81.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.186 kcal (2) G-P(sol) polarization free energy of solvation -82.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds