Wall clock time and date at job start Tue Mar 31 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 116.99854 * 2 1 4 4 O 1.20822 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99819 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46962 * 180.02562 * 5 3 2 7 7 C 1.36682 * 120.00477 * 89.99554 * 6 5 3 8 8 H 1.07999 * 119.99607 * 151.53434 * 7 6 5 9 9 C 1.39161 * 119.99693 * 331.80570 * 7 6 5 10 10 N 1.31287 * 119.99844 * 8.76273 * 9 7 6 11 11 Si 1.86797 * 119.99742 * 188.75741 * 9 7 6 12 12 H 1.48498 * 109.47365 * 89.99982 * 11 9 7 13 13 H 1.48498 * 109.47073 * 210.00353 * 11 9 7 14 14 H 1.48507 * 109.47241 * 330.00120 * 11 9 7 15 15 C 1.34780 * 119.99660 * 269.99346 * 6 5 3 16 16 O 1.21651 * 119.99903 * 4.36863 * 15 6 5 17 17 C 1.47290 * 119.99976 * 184.36465 * 15 6 5 18 18 C 1.36998 * 126.95764 * 174.06741 * 17 15 6 19 19 C 1.41173 * 103.84049 * 179.87547 * 18 17 15 20 20 C 1.50698 * 126.69021 * 180.09773 * 19 18 17 21 21 C 1.52992 * 117.50251 * 343.94125 * 20 19 18 22 22 C 1.52998 * 60.00436 * 252.51034 * 21 20 19 23 23 N 1.30170 * 106.61346 * 0.38740 * 19 18 17 24 24 O 1.20893 * 112.01247 * 359.74854 * 23 19 18 25 25 H 1.08997 * 109.46705 * 300.00328 * 1 2 3 26 26 H 1.08996 * 109.46844 * 59.99999 * 1 2 3 27 27 H 1.08993 * 109.46601 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99532 * 5 3 2 29 29 H 1.08998 * 109.46598 * 299.99186 * 5 3 2 30 30 H 0.97010 * 119.99345 * 184.97880 * 10 9 7 31 31 H 1.08001 * 128.08070 * 359.97438 * 18 17 15 32 32 H 1.09003 * 115.54805 * 129.65065 * 20 19 18 33 33 H 1.09002 * 117.50206 * 0.02562 * 21 20 19 34 34 H 1.09000 * 117.49751 * 145.01890 * 21 20 19 35 35 H 1.08999 * 117.49748 * 252.51249 * 22 21 20 36 36 H 1.08998 * 117.51878 * 107.47658 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1759 3.3345 1.1841 8 1 4.8819 4.1498 1.2408 9 6 3.4681 2.9468 2.3178 10 7 2.7463 1.8503 2.2979 11 14 3.5453 3.9863 3.8679 12 1 2.4590 4.9985 3.8397 13 1 3.3781 3.1138 5.0579 14 1 4.8601 4.6731 3.9385 15 6 4.1724 3.3267 -1.1668 16 8 3.9234 2.7692 -2.2190 17 6 4.6822 4.7085 -1.1680 18 6 5.0336 5.4558 -2.2611 19 6 5.4466 6.6879 -1.7093 20 6 5.9402 7.8935 -2.4669 21 6 6.3660 7.6879 -3.9219 22 6 7.4228 7.9331 -2.8431 23 7 5.3237 6.5773 -0.4182 24 8 4.9026 5.4912 -0.0945 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 3.9558 0.7809 -0.8908 29 1 3.9564 0.7807 0.8892 30 1 2.1961 1.6179 3.0624 31 1 5.0007 5.1698 -3.3020 32 1 5.4604 8.8382 -2.2112 33 1 6.2887 6.6807 -4.3315 34 1 6.1661 8.4974 -4.6239 35 1 7.9182 8.9040 -2.8353 36 1 8.0411 7.0874 -2.5423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337636153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:26 Heat of formation + Delta-G solvation = -8.963563 kcal Electronic energy + Delta-G solvation = -24051.156208 eV Core-core repulsion = 20313.207980 eV Total energy + Delta-G solvation = -3737.948228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.26707 -39.53088 -38.30389 -37.46822 -35.60930 -34.72019 -32.73958 -31.83896 -31.24619 -28.56935 -26.39459 -25.17898 -24.24258 -23.04029 -22.19006 -21.30210 -20.16180 -19.30782 -18.29731 -17.03626 -16.61967 -16.32073 -15.96717 -15.48506 -15.43210 -15.08459 -14.57460 -14.44221 -14.18513 -13.57689 -13.36008 -12.81243 -12.59617 -12.40182 -11.96978 -11.70957 -11.58405 -11.42893 -11.33311 -11.27220 -10.93381 -10.92108 -10.66439 -10.46120 -10.33295 -9.84923 -9.57730 -9.40777 -9.18761 -9.09408 -8.95376 -8.13497 -6.71111 -4.24943 1.58400 2.51601 3.09363 3.16986 3.19189 3.40422 3.62407 3.72495 3.77497 4.01759 4.06631 4.25824 4.50804 4.81587 4.85864 4.88164 5.17282 5.35236 5.55225 5.66886 5.68206 5.74318 5.77006 5.89074 5.92887 5.98813 6.05517 6.09201 6.18613 6.33642 6.46334 6.61287 7.26295 7.31481 7.50616 8.07703 8.63341 8.81481 9.05063 9.11936 9.43573 10.35093 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.005423 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.072338 B = 5161.738414 C = 6382.798410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.373 6.373 3 C 0.493 3.507 4 O -0.508 6.508 5 C 0.157 3.843 6 N -0.400 5.400 7 C -0.333 4.333 8 H 0.119 0.881 9 C 0.054 3.946 10 N -0.868 5.868 11 Si 0.934 3.066 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.528 3.472 16 O -0.580 6.580 17 C -0.016 4.016 18 C -0.196 4.196 19 C 0.032 3.968 20 C -0.078 4.078 21 C -0.165 4.165 22 C -0.166 4.166 23 N -0.370 5.370 24 O 0.134 5.866 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.279 0.721 31 H 0.171 0.829 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 2.779 -4.791 6.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.394 6.394 5 C 0.032 3.968 6 N -0.116 5.116 7 C -0.461 4.461 8 H 0.136 0.864 9 C -0.152 4.152 10 N -0.506 5.506 11 Si 0.759 3.241 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.187 1.187 15 C 0.316 3.684 16 O -0.467 6.467 17 C -0.082 4.082 18 C -0.220 4.220 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.203 4.203 22 C -0.204 4.204 23 N -0.073 5.073 24 O 0.065 5.935 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.405 3.461 -4.080 6.342 hybrid contribution -0.623 0.219 0.267 0.712 sum 2.782 3.679 -3.813 5.985 Atomic orbital electron populations 1.22923 0.78686 1.01792 1.01590 1.86442 1.21617 1.35278 1.85754 1.23543 0.91929 0.80624 0.70391 1.90526 1.66467 1.36379 1.45995 1.20657 0.87866 0.84092 1.04165 1.43261 1.54433 1.08615 1.05329 1.20083 1.24264 1.16351 0.85379 0.86397 1.25381 0.94178 0.95479 1.00143 1.69441 1.26811 1.21695 1.32677 0.85788 0.79639 0.79442 0.79213 1.19795 1.20610 1.18678 1.16542 0.84763 0.82474 0.84572 1.90720 1.58494 1.66093 1.31364 1.24260 1.02464 0.95377 0.86101 1.22478 1.06214 0.92588 1.00678 1.22415 1.03837 0.96139 0.90079 1.20016 0.98129 0.95052 0.96520 1.23019 1.02793 1.03698 0.90756 1.22999 0.91045 1.03467 1.02852 1.73650 1.15513 1.02248 1.15881 1.85327 1.59413 1.16635 1.32125 0.92712 0.93169 0.89583 0.89808 0.84917 0.90956 0.81150 0.86245 0.88086 0.88059 0.88211 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -7.84 10.57 -39.26 -0.41 -8.26 16 3 C 0.49 11.94 5.77 36.01 0.21 12.15 16 4 O -0.51 -13.91 15.55 -18.75 -0.29 -14.20 16 5 C 0.16 3.63 5.22 -5.19 -0.03 3.61 16 6 N -0.40 -9.95 2.10 -117.38 -0.25 -10.20 16 7 C -0.33 -8.33 8.67 -15.05 -0.13 -8.46 16 8 H 0.12 2.88 5.09 -52.49 -0.27 2.62 16 9 C 0.05 1.33 5.38 -17.44 -0.09 1.23 16 10 N -0.87 -21.55 8.02 55.51 0.45 -21.10 16 11 Si 0.93 19.73 29.57 -169.99 -5.03 14.71 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.53 13.05 7.62 -12.58 -0.10 12.95 16 16 O -0.58 -15.03 16.55 5.23 0.09 -14.94 16 17 C -0.02 -0.35 6.94 -36.35 -0.25 -0.61 16 18 C -0.20 -3.73 10.26 -38.92 -0.40 -4.13 16 19 C 0.03 0.58 6.93 -82.18 -0.57 0.01 16 20 C -0.08 -1.05 6.33 -91.77 -0.58 -1.64 16 21 C -0.17 -1.76 10.04 -26.74 -0.27 -2.03 16 22 C -0.17 -1.83 10.23 -26.73 -0.27 -2.11 16 23 N -0.37 -7.61 12.04 33.53 0.40 -7.21 16 24 O 0.13 3.00 8.01 15.46 0.12 3.12 16 25 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.79 7.49 -51.93 -0.39 1.40 16 29 H 0.13 3.01 6.70 -51.93 -0.35 2.66 16 30 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.17 2.88 7.61 -52.49 -0.40 2.48 16 32 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.10 1.10 7.33 -51.93 -0.38 0.72 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -30.48 317.19 -5.43 -35.91 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.88 Total: 4.59 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -1.42 Total: 12.81 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.60 Total: -38.51 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.50 Total: -34.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.48 -5.43 -35.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337636153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.946 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds